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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00051021 ID=TCONS_00051021|Name=TCONS_00051021|organism=Clytia hemisphaerica|type=transcript|length=1143bp GCATGTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATACATT TGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATTGAAA ACGAAACAGAAAAGTCACATTTGAAAATGGCATCTACTGAACCACTTAGA GTTTGTGTCACAGGAGCAGCTGGTCAAATTGCTTACTCCCTCTTATATAG CATCGGTAATGGAGATGTCTTTGGTAAATCTCAGCCAATTACCTTACTCT TATTGGATATCCCACCAATGATGCCAGTCTTGGAAGGAGTTGTAATGGAA TTACAAGATTGCTCTCTTCCCTTACTTCATGAAGTCGTTGGAACTGCTGA TCCAAATGTCTCATTCAATAATGTTGATGCTGCCATCTTGGTTGGTGCTA TGCCAAGAAGAGAAGGAATGGAAAGGAAAGATCTTTTGAAAGCTAATGCT AAAATCTTTGAAGACCAAGGAAAGGCTCTTGATCAATACGCAAAGAAGAC GGTCAAGattttggTTGTAGGAAACCCAGCAAACACTAACTGTCTGATCG CTTCCAAATGTGCACCAAGTATTCCAAAAGAAAATTTCTCATGTCTCACA AAATTAGATCAAAACAGAGCTATTTCACAGGTTGCAATGAGACTCGGTAT CAAAACATGTGACGTCAGCAAGGTTATCATTTGGGGAAACCACTCATCCA CACAATACCCTGATGTTCAACACGGGTTCGTCAATCTGAACGGTCAAGCA GTCCCAATTACTGAGGCTGTTAAAGATGATAATTGGATTCAAGGAGAATT CTTAAGGACTGTTCAAACGCGTGGTGCGGCCATCATAAAAGCGAGAAAAT TATCAAGTGCCATGTCCGCTGCGAAAGCCATTTGTGACCACATGCGCGTT TGGTGGTTCGGAACCGCCGAAGGTGAATACATGAGCATGGGTGTTATCAC TGACGGCACACATTACGGAATCCCTGAAGATATCGTTTATTCTTTCCCAC TGACGATCGGTGCGGGCCACAAATACACAATCGTCGATGGTTTAGAAATC AATGCCTTCTCTCGGCAAAAGATGGATCTCTCAGCTAAGGAATTAGTGGA GGAAAGAGATGTCGCGTTAGCGTTCTTGAAAAAGGAATGAGTT Run BLAST on NCBI transcript from alignment at scaffold_192:47912..54587- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00051021 ID=TCONS_00051021|Name=TCONS_00051021|organism=Clytia hemisphaerica|type=transcript|length=6676bp|location=Sequence derived from alignment at scaffold_192:47912..54587- (Clytia hemisphaerica) GCATGTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATACATT
TGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATTGAAA
ACGAAACAGAAAAGTCACATTTGAAAATGGTAAGATTCTTTTTATTTTCG
TTTGATTTTTCTTGATAAAAAACTGGACAGTTTGCGTTTACAACCCACGA
TATGGCCAGAAAATAACTCAAACAATTTTGGTTTTTGTTTGGGCCAACAG
CAAAACATTCTTTTGGTCCAAATATTGATGTTTTATGTCCAAGTTTGGGT
CACAAAAAGTTTTATTTTTAACTCCAAAAGCCCAGCCCAAACACGTCTCA
ACACGAATATACACAGACCAGTTCAGACCATAAAATATGACCCATATAAA
CACGCACACAAAACTTTTGAAATTTTCGCCTCTGAATGAAAAACTACTAA
CTTAACCAGGCTGGGTTCAGGACTTTTTCAAGTTCAAAATCCCCAAGGGG
TTGTGGTTGTGGGAATCATATGACGTTTTGCTTTTCTGCTTCTTTTGCAC
CTTCATCTTCCCATTGGGCTATTCCATTTTTAAACCATACAGGGGTATTG
ACGAACTTTTCCAGGNATGTAATGGTCTTTTGAAGTGCTTGTTCTAAGAG
ATGAGTGAATATAATTGTTTTTAGTTTTCAAGAGAAGCAAATTTAATCTT
TTTTCTACAAGATTAACTTTAATATAACGCAAATTATGCATGCAAGTTTT
TATTTAATACTTTCTTTTTGCATATGTTTTGCATACTTTCTAAGGGAATT
TCACCACAGCAATTCGGCCACCATAATTTTTGCATACAATTCANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNTTTCATTGGAAAGTCTATCAGTCAT
TTTCTTCTGTCTTCTTTTGAAAGAGTATTGAAAATCGACAAAGCAAAAGC
TGAGCTGATTGCTCACCAAAAGTTTTGCTGTGTGGAGACCATGTATAAAC
AAAGATCATGGAAACTGTTCGGTAAAATATTTGCTTTTCGTTCTGCAAAT
TACCGCTCTGGATCTAGCCTCAGTGATCTAATTTTTTATTTGATACTGTA
GGAAATATTGCTGGATATTTTGCTTTTGATAACAAATTAAAGGTTTAAAA
TGCTTTGCTTTTTAAAAAACTTTCGAAATTCTTCAAATCTTTTATATTTT
CCACTACCACGAATTTCAAATTCTTTTATTTGGAGAATAGGCTAAATCAA
TGATCATGCGCTGTGACGTCATAGTTCACGTGCTCCATGACAAAGTGCAT
GCGTGCATGTTCAAAACAACACGTCCGAAGCTTCGAAACCCAGGTCGATA
CATTTGCTGTCTTCCTCTACACACCCCCAGTTGAAATTCAGTTTGTAATT
GAAAACGAAACAGAAAAGTCACATTTGAAAATGGTAAGATTCTTTTTATT
TTCGTTTGATTTTTCTTGATAAAAAACTGGACAGTTTGCGTTTACAACCC
ACGATATGGCCAGAAAATAACTCAAACAATTTTGGTTTTTGTTTGGGCCA
ACAGCAAAACATTCTTTTGGTCCAAATATTGATGTTTTATGTCCAAGTTT
GGGTCACAAAAAGTTTTATTTTTAACTCCAAAAGCCCAGCCCAAACACGT
CTCAACACGAATATACACAGACCAGTTCAGACCATAAAATATGACCCATA
TAAACACGCACACAAAACTTTTGAAATTTTCGCCTCTGAATGAAAAACTA
CTAACTTAACCAGGCTGGGTTCAGGACTTTTTCAAGTTCAAAATCCCCAA
GGGGTTGTGGTTGTGGGAATCATATGACGTTTTGCTTTTCTGCTTCTTTT
GCACCTTCATCTTCCCATTGGGCTATTCCATTTTTAAACCATACAGGGGT
ATTGACGAACTTTTCCAGGGGGGTCTGAGCCTTGATTTTCCAGGGGGTTC
TCTCCTCCTAAACTGGCATCAATAGACCTTTTCGCCTTTCCGTCCGCCAT
CTTGAATTGTATGCAAAAATACAGGAACAAAAATGTCGTGGTTGGATTTA
GTTGAAATGTATGCAAAACATATGCAAGTTTACACAAAGATTAAAAAGAC
AACAAAGCATCTTATAAATAAATATTATAATCATTANGGCCGATGGCTTT
TTCCTTTTTCACAAAATTTCACTTTCCATCCAGGCGTGTCGACCTAATTT
TCCAGGGGATAGTTTGTTATCCAAAATTTCCAGGGGGGTTAGTGAAAAAA
GTTTGTCAATACCCCCTGTATAATTTTTTTTTGGAATAGCCCAATATTGT
ATTTGAATTTTCTGGATTTTTCAATTTTTGGTTTAAATTTTTTTAAACAA
TCAGCACTCAGGAAGGTCAAAGTTTGCCAGAGGACATGGTCCATCAGATG
ACATAGGTGTGTCGCCCTATTTGGTCAGAAAAATAAAAAATAAATATAAA
AACTCTTTAAAAAAGTTATTTTTAACTTCCTACGAATTTCCATTTTATTT
ATTACAAATTTGGCTTCGAAAACACTATTTGATATTCCCTGGAGCAGCAC
AAACTTGTTGAACTGAATTGGGTTATAAAACTGATCAAACACTCACGATT
TTTTACAAAATTTCAATTATTGATTTATTACTGTGAGATCGGGTAACTTG
CATCAGTGGAGGCTAACATGCATTGCCATCAAATGAGTGACCAATCAAAG
CAGCAAAATTTCAAAACAAATGAACTACACAGCTCCGCTCGCAATCTACT
CTACCATTTTTGTTTTGATTTAACTTTGTATTTTATTAAGTCATTCATTT
GAGGGCTATGCATGTTTGCCTCCAATGATGCAAGTTACCCGATCTCACGG
TAAATGTCAAGAGTTGGGTCAAGCTTGATTTAAAGATTAGTTCAATAAGT
TTGATTGATCGTGACTTCACTTTTTTTATAGGCAAAAGCTTGTTAATCCT
CGTTAATCCTGGGTCAGAGCAGGATTAATATTTGGCCAATTTAATCAGAA
TTTAATCCAGATTTAAGCCTATTTTTTTTCGAACAACTGACGATTCTGCA
TTAATCGGCGCTAACAGGCGCTAATCGAGATTTAATCGAAAATTAAGCTA
ATCGGCCGCTAATCCACTTTTGAACAACCGTGCCCTTGACAATAAAAATT
GAGTTTTGAATTCTTTTATATTTCAGGCATCTACTGAACCACTTAGAGTT
TGTGTCACAGGAGCAGCTGGTCAAATTGCTTACTCCCTCTTATATAGCAT
CGGTAATGGAGATGTCTTTGGTAAATCTCAGGTTGGTCTTATTGATTATT
TTGTTATAATAGAAAGTTTTAACATTTTAAATTGATGTTGATACTTCATA
TCAATCAAATAATCCTGTTCTAAGCAATGATCAGTCTACATCATTCTCCA
TACCCTCAAGAGAGTCAAAAAATATTGTGTCTGATATTTCCCTGTTCTCT
TTTTATTCTAGCCAATTACCTTACTCTTATTGGATATCCCACCAATGATG
CCAGTCTTGGAAGGAGTTGTAATGGAATTACAAGATTGCTCTCTTCCCTT
ACTTCATGGTAAGTTCAGCCATCGTTATCATCAAAAATTAAGAATTGTTT
TTATTTATTTACTAAACAGTTGGTTGACAAGTCTTTGGCATTCGATTTTT
TTTGTGAAATGGTTTGGTTTTTAATCTCTCTTCTCCTAATTAGAATTCTT
CAATTTTACTAAAATAACAAGAGAATTTTGAAGGAGAGTTTTTGGTATTT
ATCGTAATCTGTTTAATGTTTATTATTTGTAGAAGTCGTTGGAACTGCTG
ATCCAAATGTCTCATTCAATAATGTTGATGCTGCCATCTTGGTTGGTGCT
ATGCCAAGAAGAGAAGGAATGGAAAGGAAAGATCTTTTGAAAGCTAATGC
TAAAATCTTTGAAGACCAAGGAAAGGCTCTTGATCAATACGCAAAGAAGA
CGGTCAAGGTACATTTTTCTTTACTTCCTCTTCCCATGATAAATGTAAAC
AACATTGTGACAAATTGCACTTCTTGTTTGTTGGCCACAATATCCTTCCT
CTATTCTTGAACAACAAGATTCGAACTCCTCCCTAGTAATGCCCCTCTTC
AGCCCCTCTCAATCCCCGATCAAATTTCAATATTTTCTTAACTTTTTTTA
ATGGATATGTTGTAAAAGATTTTTTAGAATGTAACCGTCAATTCTTTTCA
TTTCATTTAAAAAATATTTTACCTGTAAGTTAATTAATTTAATGTTTCTT
ACTTTTTCTTTAGATTTTGGTTGTAGGAAACCCAGCAAACACTAACTGTC
TGATCGCTTCCAAATGTGCACCAAGTATTCCAAAAGAAAATTTCTCATGT
CTCACAAAATTAGATCAAAACAGAGCTATTTCACAGGTAATTTCGTTATC
TGGGTTCAAGATTTAGAAGATTATGAAATTTTATTAAAAGCATAATACGT
TAGACAGTTTTTGGGCCGTTCAAAACTTGCTTTATTAAATTTGTTTTGTT
ACAAAAAAGAAAAAGTATTCTTGCTCTAGAGAATCTATCATCTTAAATGT
CTAGAACTACAGGTCTACTGTTTCACCAGAAATAGACTTTATAGAACAAT
GTTTGATTTCAGGTTGCAATGAGACTCGGTATCAAAACATGTGACGTCAG
CAAGGTTATCATTTGGGGAAACCACTCATCCACACAATACCCTGATGTTC
AACACGGGTTCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAGGCT
GTTAAAGATGATAATTGGATTCAAGGAGAATTCTTAAGGGTACATAAGCT
GTTCGTTCATATTTTATCTGTCCTCCTAAGACTGCCTAAGACACAATAGC
GAGTTTATGTATTCGAGATAAATCGAGGGGGCGGTACAAAGCAAAGTTGA
CATGGGGCCGAAATCACCGTCCACTTTGCTCGACGAGGTTAAAAACACCA
AGATACCGTCGTCTGTTAAGGTGAGCAAAAGCGATATAGAGCCGAACATC
AACAATCGACTTTGTTTTGTATCGATTTCAACTACCGTCGCCCTCGATAT
CCTCCGATACATAAACTCGGTAATAAAAGAAACAGAAACTTAATTCTCCA
CAATGTCATGATAGAGAAAGTTTATGCATGAAGAGAATTAAAGTGTGATA
TGAAATCCGATCCTCAAATCACATCTTTAAAAAAACATATTTCATATGAC
ACATTTAATAATCCTGCATAACTTCCTGTTTTTATAGACTGTTCAAACGC
GTGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCCGCT
GCGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGCCGA
AGGTGAATACATGAGCATGGGTGTTATCACTGACGGCACACATTACGGAA
TCCCTGAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGCCAC
AAATACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCAAAA
GATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGTTAG
CGTTCTTGAAAAAGGAATGAGTTAAANACTTGCTTTATTAAATTTGTTTT
GTTACAAAAAAGAAAAAGTATTCTTGCTCTAGAGAATCTATCATCTTAAA
TGTCTAGAACTACAGGTCTACTGTTTCACCAGAAATAGACTTTATAGAAC
AATGTTTGATTTCAGGTTGCAATGAGACTCGGTATCAAAACATGTGACGT
CAGCAAGGTTATCATTTGGGGAAACCACTCATCCACACAATACCCTGATG
TTCAACACGGGTTCGTCAATCTGAACGGTCAAGCAGTCCCAATTACTGAG
GCTGTTAAAGATGATAATTGGATTCAAGGAGAATTCTTAAGGGTACATAA
GCTGTTCGTTCATATTTTATCTGTCCTCCTAAGACTGCCTAAGACACAAT
AGCGAGTTTATGTATTCGAGATAAATCGAGGGGGCGGTACAAAGCAAAGT
TGACATGGGGCCGAAATCACCGTCCACTTTGCTCGACGAGGTTAAAAACA
CCAAGATACCGTCGTCTGTTAAGGTGAGCAAAAGCGATATAGAGCCGAAC
ATCAACAATCGACTTTGTTTTGTATCGATTTCAACTACCGTCGCCCTCGA
TATCCTCCGATACATAAACTCGGTAATAAAAGAAACAGAAACTTAATTCT
CCACAATGTCATGATAGAGAAAGTTTATGCATGAAGAGAATTAAAGTGTG
ATATGAAATCCGATCCTCAAATCACATCTTTAAAAAAACATATTTCATAT
GACACATTTAATAATCCTGCATAACTTCCTGTTTTTATAGACTGTTCAAA
CGCGTGGTGCGGCCATCATAAAAGCGAGAAAATTATCAAGTGCCATGTCC
GCTGCGAAAGCCATTTGTGACCACATGCGCGTTTGGTGGTTCGGAACCGC
CGAAGGTGAATACATGAGCATGGGTGTTATCACTGACGGCACACATTACG
GAATCCCTGAAGATATCGTTTATTCTTTCCCACTGACGATCGGTGCGGGC
CACAAATACACAATCGTCGATGGTTTAGAAATCAATGCCTTCTCTCGGCA
AAAGATGGATCTCTCAGCTAAGGAATTAGTGGAGGAAAGAGATGTCGCGT
TAGCGTTCTTGAAAAAGGAATGAGTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00051021-exon-scaffold_192-1575043694:54459..54587 | TCONS_00051021-exon-scaffold_192-1575043694:54459..54587 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1575043694:51307..51411 | TCONS_00051021-exon-scaffold_192-1575043694:51307..51411 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1575043694:51030..51126 | TCONS_00051021-exon-scaffold_192-1575043694:51030..51126 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1575043694:50630..50805 | TCONS_00051021-exon-scaffold_192-1575043694:50630..50805 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1575043694:50202..50324 | TCONS_00051021-exon-scaffold_192-1575043694:50202..50324 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1575043694:48696..48872 | TCONS_00051021-exon-scaffold_192-1575043694:48696..48872 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1575043694:47912..48247 | TCONS_00051021-exon-scaffold_192-1575043694:47912..48247 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1510915933:54459..54587 | TCONS_00051021-exon-scaffold_192-1510915933:54459..54587 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1510915933:51307..51411 | TCONS_00051021-exon-scaffold_192-1510915933:51307..51411 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1510915933:51030..51126 | TCONS_00051021-exon-scaffold_192-1510915933:51030..51126 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1510915933:50630..50805 | TCONS_00051021-exon-scaffold_192-1510915933:50630..50805 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1510915933:50202..50324 | TCONS_00051021-exon-scaffold_192-1510915933:50202..50324 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1510915933:48696..48872 | TCONS_00051021-exon-scaffold_192-1510915933:48696..48872 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1510915933:47912..48247 | TCONS_00051021-exon-scaffold_192-1510915933:47912..48247 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1491911889:54459..54587 | TCONS_00051021-exon-scaffold_192-1491911889:54459..54587 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1491911889:51307..51411 | TCONS_00051021-exon-scaffold_192-1491911889:51307..51411 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1491911889:51030..51126 | TCONS_00051021-exon-scaffold_192-1491911889:51030..51126 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1491911889:50630..50805 | TCONS_00051021-exon-scaffold_192-1491911889:50630..50805 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1491911889:50202..50324 | TCONS_00051021-exon-scaffold_192-1491911889:50202..50324 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1491911889:48696..48872 | TCONS_00051021-exon-scaffold_192-1491911889:48696..48872 | Clytia hemisphaerica | exon |
TCONS_00051021-exon-scaffold_192-1491911889:47912..48247 | TCONS_00051021-exon-scaffold_192-1491911889:47912..48247 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_192 | supercontig | scaffold_192:47912..54587 - |
Blast
BLAST of TCONS_00051021 vs. Swiss-Prot (Human)
Match: MDHC (Malate dehydrogenase, cytoplasmic OS=Homo sapiens GN=MDH1 PE=1 SV=4) HSP 1 Score: 493.041 bits (1268), Expect = 3.650e-174 Identity = 230/331 (69.49%), Postives = 277/331 (83.69%), Query Frame = 1
Query: 136 TEPLRVCVTGAAGQIAYSLLYSIGNGDVFGKSQPITLLLLDIPPMMPVLEGVVMELQDCSLPLLHEVVGTADPNVSFNNVDAAILVGAMPRREGMERKDLLKANAKIFEDQGKALDQYAKKTVKILVVGNPANTNCLIASKCAPSIPKENFSCLTKLDQNRAISQVAMRLGIKTCDVSKVIIWGNHSSTQYPDVQHGFVNLNGQAVPITEAVKDDNWIQGEFLRTVQTRGAAIIKARKLSSAMSAAKAICDHMRVWWFGTAEGEYMSMGVITDGTHYGIPEDIVYSFPLTIGAGHKYTIVDGLEINAFSRQKMDLSAKELVEERDVALAFL 1128
+EP+RV VTGAAGQIAYSLLYSIGNG VFGK QPI L+LLDI PMM VL+GV+MELQDC+LPLL +V+ T +V+F ++D AILVG+MPRREGMERKDLLKAN KIF+ QG ALD+YAKK+VK++VVGNPANTNCL ASK APSIPKENFSCLT+LD NRA +Q+A++LG+ DV VIIWGNHSSTQYPDV H V L G+ V + EA+KDD+W++GEF+ TVQ RGAA+IKARKLSSAMSAAKAICDH+R WFGT EGE++SMGVI+DG YG+P+D++YSFP+ I + V+GL IN FSR+KMDL+AKEL EE++ A FL
Sbjct: 2 SEPIRVLVTGAAGQIAYSLLYSIGNGSVFGKDQPIILVLLDITPMMGVLDGVLMELQDCALPLLKDVIATDKEDVAFKDLDVAILVGSMPRREGMERKDLLKANVKIFKSQGAALDKYAKKSVKVIVVGNPANTNCLTASKSAPSIPKENFSCLTRLDHNRAKAQIALKLGVTANDVKNVIIWGNHSSTQYPDVNHAKVKLQGKEVGVYEALKDDSWLKGEFVTTVQQRGAAVIKARKLSSAMSAAKAICDHVRDIWFGTPEGEFVSMGVISDGNSYGVPDDLLYSFPVVI-KNKTWKFVEGLPINDFSREKMDLTAKELTEEKESAFEFL 331
The following BLAST results are available for this feature:
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