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Overview
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050995 ID=TCONS_00050995|Name=TCONS_00050995|organism=Clytia hemisphaerica|type=transcript|length=2600bpRun BLAST on NCBI protein sequence of TCONS_00050995-protein >TCONS_00050995-protein ID=TCONS_00050995-protein|Name=TCONS_00050995-protein|organism=Clytia hemisphaerica|type=polypeptide|length=675bp MVETADLDQLELDSTIGFAGNVPGGLLAHPNKKHLIYPLGNTIVVKNIATRun BLAST on NCBI transcript from alignment at scaffold_190:41349..55055- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below.>TCONS_00050995 ID=TCONS_00050995|Name=TCONS_00050995|organism=Clytia hemisphaerica|type=transcript|length=13707bp|location=Sequence derived from alignment at scaffold_190:41349..55055- (Clytia hemisphaerica) Coding sequence (CDS) from alignment at scaffold_190:41349..55055- >TCONS_00050995 ID=TCONS_00050995|Name=TCONS_00050995|organism=Clytia hemisphaerica|type=CDS|length=30420bp|location=Sequence derived from alignment at scaffold_190:41349..55055- (Clytia hemisphaerica) Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Position
The following features are aligned
Expression
Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Values :
GrOo_1 GrOo_2 FGOo_1 FGOo_2 EG_1 EG_2 P1_1 P1_2 P2_1 P2_2 P3_1 P3_2 PoPr_1 PoPr_2 St_1 St_2 GO_1 GO_2 PH_1 PH_2 BMF_1 BMF_2 MMF_1 MMF_2 M_1 M_2 GEC_1 GEC_2 GEN_1 GEN_2
Annotated Terms
The following terms have been associated with this transcript:
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Blast
BLAST of TCONS_00050995 vs. Swiss-Prot (Human)
Match: CFA52 (Cilia- and flagella-associated protein 52 OS=Homo sapiens GN=CFAP52 PE=1 SV=3) HSP 1 Score: 704.516 bits (1817), Expect = 0.000e+0 Identity = 338/677 (49.93%), Postives = 466/677 (68.83%), Query Frame = 3
Query: 114 KMVETADLDQLELDSTIGFAGNVPGGLLAHPNKKHLIYPLGNTIVVKNIATGSQKFLSGHTDNVSCVALSKSGQYVASGQSTYMGFKADVIVWDFESMSLYCRLVLHKVKVEALAFSPNEQYLATLGGQDDGSVVIWDLPRKEAVCGSPAAVPSAGTTYCVAFAXXXXXIFVTGGNKTLRVWDLDSENRIIRPTDCNMGQLKRIVKCIQVSDDDKHIYCGTTSGDILQINLNTKLLCHYGPAKEKFSLGVLSLSLVEQ-NILIGAGDGTVAKVRVDGFKKLKSKKVDGEVTSITAPAGNLEKFFVGTQLSQIYQFNFSTFVEETISTCHYSSVKDISFPYNYSDVFATCSKNDIRVWNAKSSKELLRVVVPNMTCNAVDFFRDGKSIISAWDDGKIRVFTPESGKLRFIIHDAHNKGVTAIASTSTSKRIXETGIPVVFSCKTLYLFLAWDDGKIRVFTPESGKLRFIIHDAHNKGVTAIASTSTSKRIISGGGEGEVRVWDVNDKEYQMTRAMKEHKGAVTCIKVRSKDQQCVTSSTDGTCIIWDLERYVRNQIIFANTMFKVVCYRPDESQIITSGTDKNIGYWETYDGSQIRELVGTKSGAINGMDVSPDGSYFVTGGEDKLLKVWRYNEGDAQQVGIGHSGEITRLKICPNQRHIVSVSADGAVLRWKFPFPS 2141
K+ A + +LELD+ IGF G+VP GL HP+++H+IYPLG T++++ I T Q FL GH +NVSC+A+S+SG+Y+ASGQ T+MGFKAD+I+WD+++ L RL LHK K+EALAFSPN+ YL +LGG DDGSVV+W + +++A+CGSPAA + G V F+ + +F+T GN T+RVW+LD NR I PT+C GQLKRIV I V DDD Y GTT+GDIL++N TKLL GPAK+KFSLGV ++ ++ +L+G+G G + + G+K +K ++ G +TSIT G +F VGT+ S IY+ +F+ F E I+TCH+ +V+DI FP+ +++FATC+K DIRVW+ S++ELLR+ VPNMTC+ +DF RDGKSIISAW+DGKIR F PE+G+L ++I++AH GVTAIA+TS KR+ G +G++RV W + + ++ A+KEHK +V+CI+V+ +++CVT+STDGTCIIWDL R RNQ+I ANT+F+ VCY P+E QIITSGTD+ I YWE +DG+ IREL G+ SG+INGMD++ +G +FVTGG D L+KVW YNEG+ VG+GHSG ITR++I P ++IVSVSADGA+LRWK+P+ S
Sbjct: 4 KISPEAQVAELELDAVIGFNGHVPTGLKCHPDQEHMIYPLGCTVLIQAINTKEQNFLQGHGNNVSCLAISRSGEYIASGQVTFMGFKADIILWDYKNRELLARLSLHKGKIEALAFSPNDLYLVSLGGPDDGSVVVWSIAKRDAICGSPAAGLNVGNATNVIFSRCRDEMFMTAGNGTIRVWELDLPNRKIWPTECQTGQLKRIVMSIGVDDDDSFFYLGTTTGDILKMNPRTKLLTDVGPAKDKFSLGVSAIRCLKMGGLLVGSGAGLLVFCKSPGYKPIKKIQLQGGITSITL-RGEGHQFLVGTEESHIYRVSFTDFKETLIATCHFDAVEDIVFPFGTAELFATCAKKDIRVWHTSSNRELLRITVPNMTCHGIDFMRDGKSIISAWNDGKIRAFAPETGRLMYVINNAHRIGVTAIATTSDCKRVISGG----------------GEGEVRV-------------------------------------------WQIGCQTQKLEEALKEHKSSVSCIRVKRNNEECVTASTDGTCIIWDLVRLRRNQMILANTLFQCVCYHPEEFQIITSGTDRKIAYWEVFDGTVIRELEGSLSGSINGMDITQEGVHFVTGGNDHLVKVWDYNEGEVTHVGVGHSGNITRIRISPGNQYIVSVSADGAILRWKYPYTS 620 The following BLAST results are available for this feature:
BLAST of TCONS_00050995 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens)) Total hits: 1
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