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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050890 ID=TCONS_00050890|Name=TCONS_00050890|organism=Clytia hemisphaerica|type=transcript|length=2183bp
aaataatttttttcatgaatggTAAAAAGTATTCTGAATGctgaatcaaa
attttgatgcGTGAAAAAAGGCGTCAATAAATATTCAAATCACAACACGT
CCAAAAATTTGCATAATTTATAAAACACACATTTAGTTTTCAATTTAAAA
CCTATCAAGTTACACTACTGGAGAGTAGCGTGTTGTTTTTAAGTACCAGA
CCTCTAGAAAAATCTTTGGCTTATAAAACCAAAAGGTTTTATgatacttg
cttttattcaaaattagattttaattGGATCAGTAGAGAGAGGTGTGTGC
TGAATTGATCaaccaaaaaaatacaaaaattggaaattctTCAGGCTAAT
GCAAAGATGAGGAATCTTTGTCTTCTGGTTTTCTGCTTTTGCAGTGCTAC
CTATGTGTCGGCCGCCGACCAATCGCCAAACAGTGATGACGTTTGGATAG
TTGCCGAAACGGAACCGACACTACTGAGTCCAATAATTAAATATAAAAGG
GTGACGAAGTCAACAATTGAAGCTTGTTTACCAAGTCCACCCGAATGGGA
AACTACCAAATGGGTCCAACACAAAACACAattcaacaaaaagaaaatca
ggAAGGATCAAAAATCATTGTTGTGGAAATTGTGGAAACAAATTGAATTG
TATTTAGTGAAAGCAATCAACAAAAAGCATAAAGaatatgaaaaagtgaa
aaatcttttcacTTATACTGTTACTGAAGTCAGTGGTGACAATATTATCC
TGACTATCTATTTCAAGGTACCGGATAAAATGAATGACGATGATTTTGAT
TTGACGTGTGATCAGATTACTGGTGTCGACAGAGAATCGGATAggcaatc
aaaatcaaaaaaatgtgCATTGGTTGTCGGAATCACGGAATCAAAATGCT
TTGTCAGTACCAGGAAAAGACGCATCAGCAAGAGGTTCTCCATTGCAACG
TTGAAGAAACGTTATTTTACAACTTCTGGAAACAACGGTGTCAGATCTGG
TAAGCGTGGTATGCCTATGGGAAAACAAGCTAAATtccaaatcaaatttt
ttgaagaaagtGATTGCTCTTGCAtcgaataatttttttaaaaaacattg
taAAATTTACATCAAGAacaccctgtgtcacagacacttgaaaattgact
tttttcaTCCCTACGCGAAATTCAATATTTAGAAATTGCACTTTAAAACC
ATTCCCACTAGATTTTTTAATATTggaaatagaatttctatcttcattgg
gatttcaataggaatttttatcccgactgaggaaaaaagtactaccgggg
ctgtgagacaggggtgttcaatACAATTTTGAAAGTTATTTACTTTCGGA
ACGATTTTACCACCTTTTTGTATAATGTAGTTATATGTAATACTCATTGC
tatttttatttgttgtttttttttagtaaTTCCTTATGGTTTTCTCAGTT
AGGCCTGATTTAGATTTAAGAACTGAAAGACGGAATTTCTTAAATGTGtt
ccattatttttttgttttgatagagAATGGGGCCTATTCTTCTACTATTT
ATACAAAGCGTGTACAGCCACACTGTACTTTAGCTGTGAGCAAAAGATTC
CGATCCGATTCTAAATGTGTTAGAAGttattaaagtctgttcacgataag
tgtgcactcttttttcatgtaCATATAACTTTctaaggaattcttcaatc
tttataaatttggtatcgttagaGAGATaattgtgagtggaacaatttga
aataaaaaagtctttaaaaatgttctaaaaacgaagatgaaaataaagaa
gaaaaaaataaagatcttgtagaaaagtgctataacttttattttcgtga
atagactttagtatgATTTTCATTGGTGTGAATGAAGAGTGCTCTTATGA
ACAGAAGAATTTAATGACGTCCCTACATTACATTTAGGTAAATTCAGGCG
CATACTTTTTCCAGATAtcgattttaaaatatttaaatatctTGCTTTTT
TTGTAATCACATGCATTTTTGGCAAAGGCCATCATTCTTTTTATAGGTTT
TGTAAATATTTAGAAATTCTTTAAACTTgtgttgtttttgaaaatatata
aacgTTGATGTTATTAGCACTCTTAAAAGGTCATGGTTTCAAACCATCCC
ATACTGTGTGttttgatatcatgttcaaagtTC Run BLAST on NCBI transcript from alignment at scaffold_19:711865..716057+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050890 ID=TCONS_00050890|Name=TCONS_00050890|organism=Clytia hemisphaerica|type=transcript|length=4193bp|location=Sequence derived from alignment at scaffold_19:711865..716057+ (Clytia hemisphaerica)
aaataatttttttcatgaatggTAAAAAGTATTCTGAATGctgaatcaaa
attttgatgcGTGAAAAAAGGCGTCAATAAATATTCAAATCACAACACGT
CCAAAAATTTGCATAATTTATAAAACACACATTTAGTTTTCAATTTAAAA
CCTATCAAGTTACACTACTGGAGAGTAGCGTGTTGTTTTTAAGTACCAGA
CCTCTAGAAAAATCTTTGGCTTATAAAACCAAAAGGTTTTATgatacttg
cttttattcaaaattagattttaattGGATCAGTAGAGAGAGGTGTGTGC
TGAATTGATCaaccaaaaaaatacaaaaattggaaattctTCAGGTAAGG
ATTCGGTTAATATTTTTTCTCCATTAATTCTGCAATCGACTATTTTGGTT
GTTGTATATGCTGGTTTTGAAAATTATGCGGTGAAAATTATGCTACCCTG
GGGCTACCTTCTCCCACCTTTTTCGATAATTTACCACTTGACTGCTATGA
TATTCAGGACGATTTTATAATTGAAACACGCGGTTTAGTATTGGCAGAAA
CTTAATCAAACAAAACAATCTCAGTCTCAGGAGTCTTCAGAATTTTTCCA
GGAAATGctgatttcaaggctttttcttGAACAAGAAGTTAATATAGCAC
TTTAAGATCATTTAAAAAACATCTAATTCTGTTTCTAAAAAGGGATAAAA
AATAAGACTACCGATGATATAAGATAAATATGCAACATGCCTCAGTGACC
CGTCTGGTGCCCATCGCAATTAGCCGGGGAATATATTAAAGAAACCTCAA
TAACCATAAGGTGggtttttcatgaattttcaaaaatttgatctgtttcg
CTAGTTCTCAAGANgcctgtctcagtgacccgtcTGGTGCCCATCGCAAT
TAGCCGGGGAATATATTAAAGAAACCTCAATAACCATAAGGTGggttttt
catgaattttcaaaaatttgatctgtttcgCTAGTTCTCAAGAAATTACG
GTATGGCTgtgttttttttcgcgttgcaAACTTAAAAGTTATTCTTGATC
ATAACTACCTTAAATAATTTGTGTGAGTTTTGAAGAAGCTTAGGTTAAGA
CCATTTTCAGACGTTACGGGTCCGTTCCGTTCCGTTttgaaacgaaacgg
ttccgaaacaaaaTGGTTCCGAAacaaaacggttccgaaacaaaacggtt
ccgaaacaagtgtgaacgtcaaaatttgaaacgtcaaaaaaagaagacgt
tacaaagcaaaacagatcgaaacggttttgctcaacttttttcatcggaa
cggaactgctccatTTTCTTGCTCCGAGACGTTCCAGAACCAGTTAACGA
AACGCATATCGGAGTGAAatggaacagtaacgtgtgaacaggGTCTAAGT
ACTTGTTATGTTATTTTGGTAAGTTTGACGTTAAATGCGGTTTTtcgagg
ccccttgaaaatggaatTTTTCTCAAAGTGGTCTGATGATAAATTTATCG
TAAACAAAAATATCGCTTGTAGTAATCTTTAAGCTAAAACTCATAACGAG
GCGTGGTATACTCTTTGTTGTTGAGATGAGAACCAACCAGCTAGAATTGT
TCGTATCTTGTTCCTATATTTATTAGAATAGCATTTACTGCTTAATACTT
ACTTCAATTCTTACATTCTGAACtcaatagttttttttaattattcattA
TCTATTATTAATTGTTTTAGCCTTTTTAAGACCCATTTTTGAGAGGGCTT
TCACGGTTCTGCCCTTTTAACTCAAAGGAAAGTTTTAATAGAATTGCGGA
ATTCAGGTCCACTGTCGGGGACAGAAGCTTTACATTGTCTGGAATATCGG
AAAAACtccaatttcaaagaaaatttctgtGGTTCAAATTTCGGCTTTCA
TTTTTAGTATGAcggaaatttggaaagaaaataacGATATGGCAGAATTA
GGAAGCCCCTGCAACCTCACTGCTCCTACAACAAAActagaaatatattt
ttctttgtttttagcgTTTTGGCAATGTTCTTATGAAGTTGCTCTCATAA
AGTTGTAAACTTTTTTCTGGGTCATTTTGTGTGGAAACCAGGGCATTGCA
AACATTACAGCTCCCTTTCAGAGTGGTTTTCACATGGTGTAAGAAAGAGT
GTTTCTTCATCGTTCTTGTAACGTTAGAAACGATTAATGGACGTTTCCCC
GACGGACATTTCCCCGACGGTCATAGTCGGGGAAACGTCCGTTCGGGGAA
AAGTCCATCGGGGAAATGTCTGGCCGGGAAAAcgttcgtcggggaaaaat
ctGTCGGGGAAACGTCCGGTCACCTTAAAAACTTAACTTTCTTATTTCTA
ATAGGCTAATGCAAAGATGAGGAATCTTTGTCTTCTGGTTTTCTGCTTTT
GCAGTGCTACCTATGTGTCGGCCGCCGACCAATCGCCAAACAGTGATGAC
GTTTGGATAGTTGCCGAAACGGAACCGACACTACTGAGTCCAATAATTAA
ATATAAAAGGGTGACGAAGTCAACAATTGAAGCTTGTTTACCAAGTCCAC
CCGAATGGGAAACTACCAAATGGGTCCAACACAAAACACAattcaacaaa
aagaaaatcaggAAGGATCAAAAATCATTGTTGTGGAAATTGTGGAAACA
AATTGAATTGTATTTAGTGAAAGCAATCAACAAAAAGCATAAAGaatatg
aaaaagtgaaaaatcttttcacTTATACTGTTACTGAAGTCAGTGGTGAC
AATATTATCCTGACTATCTATTTCAAGGTACCGGATAAAATGAATGACGA
TGATTTTGATTTGACGTGTGATCAGATTACTGGTGTCGACAGAGAATCGG
ATAggcaatcaaaatcaaaaaaatgtgCATTGGTTGTCGGAATCACGGAA
TCAAAATGCTTTGTCAGTACCAGGAAAAGACGCATCAGCAAGAGGTTCTC
CATTGCAACGTTGAAGAAACGTTATTTTACAACTTCTGGAAACAACGGTG
TCAGATCTGGTAAGCGTGGTATGCCTATGGGAAAACAAGCTAAATtccaa
atcaaattttttgaagaaagtGATTGCTCTTGCAtcgaataattttttta
aaaaacattgtaAAATTTACATCAAGAacaccctgtgtcacagacacttg
aaaattgacttttttcaTCCCTACGCGAAATTCAATATTTAGAAATTGCA
CTTTAAAACCATTCCCACTAGATTTTTTAATATTggaaatagaatttcta
tcttcattgggatttcaataggaatttttatcccgactgaggaaaaaagt
actaccggggctgtgagacaggggtgttcaatACAATTTTGAAAGTTATT
TACTTTCGGAACGATTTTACCACCTTTTTGTATAATGTAGTTATATGTAA
TACTCATTGCtatttttatttgttgtttttttttagtaaTTCCTTATGGT
TTTCTCAGTTAGGCCTGATTTAGATTTAAGAACTGAAAGACGGAATTTCT
TAAATGTGttccattatttttttgttttgatagagAATGGGGCCTATTCT
TCTACTATTTATACAAAGCGTGTACAGCCACACTGTACTTTAGCTGTGAG
CAAAAGATTCCGATCCGATTCTAAATGTGTTAGAAGttattaaagtctgt
tcacgataagtgtgcactcttttttcatgtaCATATAACTTTctaaggaa
ttcttcaatctttataaatttggtatcgttagaGAGATaattgtgagtgg
aacaatttgaaataaaaaagtctttaaaaatgttctaaaaacgaagatga
aaataaagaagaaaaaaataaagatcttgtagaaaagtgctataactttt
attttcgtgaatagactttagtatgATTTTCATTGGTGTGAATGAAGAGT
GCTCTTATGAACAGAAGAATTTAATGACGTCCCTACATTACATTTAGGTA
AATTCAGGCGCATACTTTTTCCAGATAtcgattttaaaatatttaaatat
ctTGCTTTTTTTGTAATCACATGCATTTTTGGCAAAGGCCATCATTCTTT
TTATAGGTTTTGTAAATATTTAGAAATTCTTTAAACTTgtgttgtttttg
aaaatatataaacgTTGATGTTATTAGCACTCTTAAAAGGTCATGGTTTC
AAACCATCCCATACTGTGTGttttgatatcatgttcaaagtTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050890-exon-scaffold_19-1491911889:711865..712208 | TCONS_00050890-exon-scaffold_19-1491911889:711865..712208 | Clytia hemisphaerica | exon |
| TCONS_00050890-exon-scaffold_19-1510915933:711865..712208 | TCONS_00050890-exon-scaffold_19-1510915933:711865..712208 | Clytia hemisphaerica | exon |
| TCONS_00050890-exon-scaffold_19-1575043694:711865..712208 | TCONS_00050890-exon-scaffold_19-1575043694:711865..712208 | Clytia hemisphaerica | exon |
| TCONS_00050890-exon-scaffold_19-1491911889:714219..716057 | TCONS_00050890-exon-scaffold_19-1491911889:714219..716057 | Clytia hemisphaerica | exon |
| TCONS_00050890-exon-scaffold_19-1510915933:714219..716057 | TCONS_00050890-exon-scaffold_19-1510915933:714219..716057 | Clytia hemisphaerica | exon |
| TCONS_00050890-exon-scaffold_19-1575043694:714219..716057 | TCONS_00050890-exon-scaffold_19-1575043694:714219..716057 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_19 | supercontig | scaffold_19:711865..716057 + |
Blast
The following BLAST results are available for this feature:
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