TCONS_00054156 (transcript) - C. hemisphaerica

Overview
NameTCONS_00054156
Unique NameTCONS_00054156
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length160

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00054156 ID=TCONS_00054156|Name=TCONS_00054156|organism=Clytia hemisphaerica|type=transcript|length=160bp
AGGGAATCtagaaatattgaaataaaaataatagaatattaaaaataaag
aaatgaaatgaaCAAAATATCAATAGGCACATCACTCTGGGATAACAAAA
CTCGTGTGGACTTGTATCTAAATAATAACAGATGAAGAATtatctttctt
taaagaaatg
Run BLAST on NCBI

transcript from alignment at scaffold_242:29688..30172+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00054156 ID=TCONS_00054156|Name=TCONS_00054156|organism=Clytia hemisphaerica|type=transcript|length=485bp|location=Sequence derived from alignment at scaffold_242:29688..30172+ (Clytia hemisphaerica)
AGGGAATCtagaaatattgaaataaaaataatagaatattaaaaataaag
aaatgaaatgaaCAAAATATCAATAGTAAGTATATTAAACTGTGACATAA
ATTTTTCGTGATATTGGTGATATACATATACGTCGTAAAATATTATTCCT
TGGTATCTTTGATCAAAACATCATAAAATTTGTTATAGAACTGTATCTGT
TAAAAATAATCGTATGGGAGATGATACTCCGTCCTATTTCCGTGTCAAAC
TCTCCAAATATGTTCGCATAGACGCATCTTGCTTGATTGAGTAATCAAAA
CAGTGATAGATTCTACACGATCCACGAGCAGCATTATACTTTCGAAGACA
TATTTTGCATGTGTGAGTTTTGACACCATCAATGTCTGTTGTTCTTCTAG
GGCACATCACTCTGGGATAACAAAACTCGTGTGGACTTGTATCTAAATAA
TAACAGATGAAGAATtatctttctttaaagaaatg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_034173XLOC_034173Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00054156-exon-scaffold_242-1491911889:29688..29762TCONS_00054156-exon-scaffold_242-1491911889:29688..29762Clytia hemisphaericaexon
TCONS_00054156-exon-scaffold_242-1510915933:29688..29762TCONS_00054156-exon-scaffold_242-1510915933:29688..29762Clytia hemisphaericaexon
TCONS_00054156-exon-scaffold_242-1575043694:29688..29762TCONS_00054156-exon-scaffold_242-1575043694:29688..29762Clytia hemisphaericaexon
TCONS_00054156-exon-scaffold_242-1491911889:30088..30172TCONS_00054156-exon-scaffold_242-1491911889:30088..30172Clytia hemisphaericaexon
TCONS_00054156-exon-scaffold_242-1510915933:30088..30172TCONS_00054156-exon-scaffold_242-1510915933:30088..30172Clytia hemisphaericaexon
TCONS_00054156-exon-scaffold_242-1575043694:30088..30172TCONS_00054156-exon-scaffold_242-1575043694:30088..30172Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_242supercontigscaffold_242:29688..30172 +
Expression
No biomaterial libraries express this feature.
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00054156 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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