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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050728 ID=TCONS_00050728|Name=TCONS_00050728|organism=Clytia hemisphaerica|type=transcript|length=1221bp
GATTTGTCTATCGTAGACTAGTACATTTTATTCTAACATTATGaTCTCGA
AGAGGACTTCACCTATCATATAAAGCAAGAGCATCCACAAACGACGAAGG
ATATTTTTGAGACTTTTGAGATTGTACAAAGGGTCTAACAAACGACTGAG
ATACTGATGATTTTGAAGAGCAGCTTATGAGAAATGGATCAACACAACGC
AGCAGGCATTCGCGAAGATGAAAATCACCGGGTTGTTGTCGGAGAAGAAA
AGTCTCAACAAAACCTTAAAGAagaacttgaaagtttgaagaagGATCGA
GAAATTGAGAAACTAAAATTTGAAGCAGTTATCGAGAaattaaaacttca
aaatgaaaaattggaaaacaagGTTGAGATTGGAAACCTCAAATCAGAAA
ACACTCTTTTGAAAGCTGAGAAACAGTTTGGTATCGATTTGAAAACGATA
TCAGATGGCAAGCAGAAGGTCGAAGAAGAACTTCGaaatataaaagaaga
aaataccATTTTAAAAGAAGCAAAGTCAAACTTACAAAAAGAACTTGATg
ttcttgaagaaaaaaataaaagtttgctGACAGAGAAAACTGACTTTCAA
GAATTATACGAAACCTGCAAACACGAAAAGGAAGAAGCTAACAAACAAAT
TAAAGTGTTAGAAGACCAAGTAGAAGGTCTTAAGGAAACTAACCAGAGAC
TTCGAGACATCAAAggatttcaaaagaattttgctGATCTTTCTTTAACA
AAGAGAACACCGAAGGTtgagaaatatgattttaaACGAATGCCCTATGG
TGAATCAGTACTTGCAGGCGTCCATATGATTTTCGAGAAAACAAAATGCA
AACATTATGACAGTTGGTATAAAAATCTTTACCAAAGAGTTTGTACcaat
gctggattttttaaagaaatcctATTTCTCACCAACAGTGAACACTCGGA
TACTCTGCACATTAAAATTGACAAACGCGAACAAGGATGGGAAGCTGAAA
ATCTTAAATGTGTTAAACTTTTACATTCTAGCGATAACACAAAATGTAAA
GATTTGGAATATTTAGGTGGTAAAGAATGGTTTGTATCTGGTTTAACAAA
TTTTCATATAAGTAATTATTATATAACATTTGTAATGAAGGACTCAGGTG
AATAGATTTCTAAACGTTAAGCCAAAAAGGCTCAATATTCACAGTATTTA
CCCTaagagaactaattttcg Run BLAST on NCBI transcript from alignment at scaffold_185:130558..131988+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050728 ID=TCONS_00050728|Name=TCONS_00050728|organism=Clytia hemisphaerica|type=transcript|length=1431bp|location=Sequence derived from alignment at scaffold_185:130558..131988+ (Clytia hemisphaerica)
GATTTGTCTATCGTAGACTAGTACATTTTATTCTAACATTATGGTTAGTC
TAGTCGATAGCCATAGTTGGTTATTCTTGtgtttaaaatgtttcttaaat
CTCATCTTGTTGCGTTGCCATGAATAATAGCAAGGACATAAAGCTATTAC
GAAGGTTTAGAATTTCAGACGAGTGTGTACATTACAATAAGCGAACAAGG
ATTTGAACTCTTGTGTGTTGTTTTGgtagaaaagaatttttttggatttt
cagaTCTCGAAGAGGACTTCACCTATCATATAAAGCAAGAGCATCCACAA
ACGACGAAGGATATTTTTGAGACTTTTGAGATTGTACAAAGGGTCTAACA
AACGACTGAGATACTGATGATTTTGAAGAGCAGCTTATGAGAAATGGATC
AACACAACGCAGCAGGCATTCGCGAAGATGAAAATCACCGGGTTGTTGTC
GGAGAAGAAAAGTCTCAACAAAACCTTAAAGAagaacttgaaagtttgaa
gaagGATCGAGAAATTGAGAAACTAAAATTTGAAGCAGTTATCGAGAaat
taaaacttcaaaatgaaaaattggaaaacaagGTTGAGATTGGAAACCTC
AAATCAGAAAACACTCTTTTGAAAGCTGAGAAACAGTTTGGTATCGATTT
GAAAACGATATCAGATGGCAAGCAGAAGGTCGAAGAAGAACTTCGaaata
taaaagaagaaaataccATTTTAAAAGAAGCAAAGTCAAACTTACAAAAA
GAACTTGATgttcttgaagaaaaaaataaaagtttgctGACAGAGAAAAC
TGACTTTCAAGAATTATACGAAACCTGCAAACACGAAAAGGAAGAAGCTA
ACAAACAAATTAAAGTGTTAGAAGACCAAGTAGAAGGTCTTAAGGAAACT
AACCAGAGACTTCGAGACATCAAAggatttcaaaagaattttgctGATCT
TTCTTTAACAAAGAGAACACCGAAGGTtgagaaatatgattttaaACGAA
TGCCCTATGGTGAATCAGTACTTGCAGGCGTCCATATGATTTTCGAGAAA
ACAAAATGCAAACATTATGACAGTTGGTATAAAAATCTTTACCAAAGAGT
TTGTACcaatgctggattttttaaagaaatcctATTTCTCACCAACAGTG
AACACTCGGATACTCTGCACATTAAAATTGACAAACGCGAACAAGGATGG
GAAGCTGAAAATCTTAAATGTGTTAAACTTTTACATTCTAGCGATAACAC
AAAATGTAAAGATTTGGAATATTTAGGTGGTAAAGAATGGTTTGTATCTG
GTTTAACAAATTTTCATATAAGTAATTATTATATAACATTTGTAATGAAG
GACTCAGGTGAATAGATTTCTAAACGTTAAGCCAAAAAGGCTCAATATTC
ACAGTATTTACCCTaagagaactaattttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050728-exon-scaffold_185-1491911889:130558..130600 | TCONS_00050728-exon-scaffold_185-1491911889:130558..130600 | Clytia hemisphaerica | exon |
| TCONS_00050728-exon-scaffold_185-1510915933:130558..130600 | TCONS_00050728-exon-scaffold_185-1510915933:130558..130600 | Clytia hemisphaerica | exon |
| TCONS_00050728-exon-scaffold_185-1575043694:130558..130600 | TCONS_00050728-exon-scaffold_185-1575043694:130558..130600 | Clytia hemisphaerica | exon |
| TCONS_00050728-exon-scaffold_185-1491911889:130811..131988 | TCONS_00050728-exon-scaffold_185-1491911889:130811..131988 | Clytia hemisphaerica | exon |
| TCONS_00050728-exon-scaffold_185-1510915933:130811..131988 | TCONS_00050728-exon-scaffold_185-1510915933:130811..131988 | Clytia hemisphaerica | exon |
| TCONS_00050728-exon-scaffold_185-1575043694:130811..131988 | TCONS_00050728-exon-scaffold_185-1575043694:130811..131988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:130558..131988 + |
Blast
The following BLAST results are available for this feature:
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