TCONS_00050728 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050728
Unique NameTCONS_00050728
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1221

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050728 ID=TCONS_00050728|Name=TCONS_00050728|organism=Clytia hemisphaerica|type=transcript|length=1221bp
GATTTGTCTATCGTAGACTAGTACATTTTATTCTAACATTATGaTCTCGA
AGAGGACTTCACCTATCATATAAAGCAAGAGCATCCACAAACGACGAAGG
ATATTTTTGAGACTTTTGAGATTGTACAAAGGGTCTAACAAACGACTGAG
ATACTGATGATTTTGAAGAGCAGCTTATGAGAAATGGATCAACACAACGC
AGCAGGCATTCGCGAAGATGAAAATCACCGGGTTGTTGTCGGAGAAGAAA
AGTCTCAACAAAACCTTAAAGAagaacttgaaagtttgaagaagGATCGA
GAAATTGAGAAACTAAAATTTGAAGCAGTTATCGAGAaattaaaacttca
aaatgaaaaattggaaaacaagGTTGAGATTGGAAACCTCAAATCAGAAA
ACACTCTTTTGAAAGCTGAGAAACAGTTTGGTATCGATTTGAAAACGATA
TCAGATGGCAAGCAGAAGGTCGAAGAAGAACTTCGaaatataaaagaaga
aaataccATTTTAAAAGAAGCAAAGTCAAACTTACAAAAAGAACTTGATg
ttcttgaagaaaaaaataaaagtttgctGACAGAGAAAACTGACTTTCAA
GAATTATACGAAACCTGCAAACACGAAAAGGAAGAAGCTAACAAACAAAT
TAAAGTGTTAGAAGACCAAGTAGAAGGTCTTAAGGAAACTAACCAGAGAC
TTCGAGACATCAAAggatttcaaaagaattttgctGATCTTTCTTTAACA
AAGAGAACACCGAAGGTtgagaaatatgattttaaACGAATGCCCTATGG
TGAATCAGTACTTGCAGGCGTCCATATGATTTTCGAGAAAACAAAATGCA
AACATTATGACAGTTGGTATAAAAATCTTTACCAAAGAGTTTGTACcaat
gctggattttttaaagaaatcctATTTCTCACCAACAGTGAACACTCGGA
TACTCTGCACATTAAAATTGACAAACGCGAACAAGGATGGGAAGCTGAAA
ATCTTAAATGTGTTAAACTTTTACATTCTAGCGATAACACAAAATGTAAA
GATTTGGAATATTTAGGTGGTAAAGAATGGTTTGTATCTGGTTTAACAAA
TTTTCATATAAGTAATTATTATATAACATTTGTAATGAAGGACTCAGGTG
AATAGATTTCTAAACGTTAAGCCAAAAAGGCTCAATATTCACAGTATTTA
CCCTaagagaactaattttcg
Run BLAST on NCBI

transcript from alignment at scaffold_185:130558..131988+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050728 ID=TCONS_00050728|Name=TCONS_00050728|organism=Clytia hemisphaerica|type=transcript|length=1431bp|location=Sequence derived from alignment at scaffold_185:130558..131988+ (Clytia hemisphaerica)
GATTTGTCTATCGTAGACTAGTACATTTTATTCTAACATTATGGTTAGTC TAGTCGATAGCCATAGTTGGTTATTCTTGtgtttaaaatgtttcttaaat CTCATCTTGTTGCGTTGCCATGAATAATAGCAAGGACATAAAGCTATTAC GAAGGTTTAGAATTTCAGACGAGTGTGTACATTACAATAAGCGAACAAGG ATTTGAACTCTTGTGTGTTGTTTTGgtagaaaagaatttttttggatttt cagaTCTCGAAGAGGACTTCACCTATCATATAAAGCAAGAGCATCCACAA ACGACGAAGGATATTTTTGAGACTTTTGAGATTGTACAAAGGGTCTAACA AACGACTGAGATACTGATGATTTTGAAGAGCAGCTTATGAGAAATGGATC AACACAACGCAGCAGGCATTCGCGAAGATGAAAATCACCGGGTTGTTGTC GGAGAAGAAAAGTCTCAACAAAACCTTAAAGAagaacttgaaagtttgaa gaagGATCGAGAAATTGAGAAACTAAAATTTGAAGCAGTTATCGAGAaat taaaacttcaaaatgaaaaattggaaaacaagGTTGAGATTGGAAACCTC AAATCAGAAAACACTCTTTTGAAAGCTGAGAAACAGTTTGGTATCGATTT GAAAACGATATCAGATGGCAAGCAGAAGGTCGAAGAAGAACTTCGaaata taaaagaagaaaataccATTTTAAAAGAAGCAAAGTCAAACTTACAAAAA GAACTTGATgttcttgaagaaaaaaataaaagtttgctGACAGAGAAAAC TGACTTTCAAGAATTATACGAAACCTGCAAACACGAAAAGGAAGAAGCTA ACAAACAAATTAAAGTGTTAGAAGACCAAGTAGAAGGTCTTAAGGAAACT AACCAGAGACTTCGAGACATCAAAggatttcaaaagaattttgctGATCT TTCTTTAACAAAGAGAACACCGAAGGTtgagaaatatgattttaaACGAA TGCCCTATGGTGAATCAGTACTTGCAGGCGTCCATATGATTTTCGAGAAA ACAAAATGCAAACATTATGACAGTTGGTATAAAAATCTTTACCAAAGAGT TTGTACcaatgctggattttttaaagaaatcctATTTCTCACCAACAGTG AACACTCGGATACTCTGCACATTAAAATTGACAAACGCGAACAAGGATGG GAAGCTGAAAATCTTAAATGTGTTAAACTTTTACATTCTAGCGATAACAC AAAATGTAAAGATTTGGAATATTTAGGTGGTAAAGAATGGTTTGTATCTG GTTTAACAAATTTTCATATAAGTAATTATTATATAACATTTGTAATGAAG GACTCAGGTGAATAGATTTCTAAACGTTAAGCCAAAAAGGCTCAATATTC ACAGTATTTACCCTaagagaactaattttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032139XLOC_032139Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050728-exon-scaffold_185-1491911889:130558..130600TCONS_00050728-exon-scaffold_185-1491911889:130558..130600Clytia hemisphaericaexon
TCONS_00050728-exon-scaffold_185-1510915933:130558..130600TCONS_00050728-exon-scaffold_185-1510915933:130558..130600Clytia hemisphaericaexon
TCONS_00050728-exon-scaffold_185-1575043694:130558..130600TCONS_00050728-exon-scaffold_185-1575043694:130558..130600Clytia hemisphaericaexon
TCONS_00050728-exon-scaffold_185-1491911889:130811..131988TCONS_00050728-exon-scaffold_185-1491911889:130811..131988Clytia hemisphaericaexon
TCONS_00050728-exon-scaffold_185-1510915933:130811..131988TCONS_00050728-exon-scaffold_185-1510915933:130811..131988Clytia hemisphaericaexon
TCONS_00050728-exon-scaffold_185-1575043694:130811..131988TCONS_00050728-exon-scaffold_185-1575043694:130811..131988Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_185supercontigscaffold_185:130558..131988 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values :
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0 0.0118398 9.21508e-06 0 0 7.86808e-09 1.56835e-07 0.108395 0.0208666 0.0376571 0 0 0.571604 0 0 0 0 0 0 0 0 0 9.03019e-08 0 0.000288311 0.000345028 0 0.083697 0 0.0777095
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050728 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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