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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050727 ID=TCONS_00050727|Name=TCONS_00050727|organism=Clytia hemisphaerica|type=transcript|length=1226bp
TATAAACTTTATGGGTAAACAAAGCAGCACAGAACGAGGTCGTAATAGaT
CTCGAAGAGGACTTCACCTATCATATAAAGCAAGAGCATCCACAAACGAC
GAAGGATATTTTTGAGACTTTTGAGATTGTACAAAGGGTCTAACAAACGA
CTGAGATACTGATGATTTTGAAGAGCAGCTTATGAGAAATGGATCAACAC
AACGCAGCAGGCATTCGCGAAGATGAAAATCACCGGGTTGTTGTCGGAGA
AGAAAAGTCTCAACAAAACCTTAAAGAagaacttgaaagtttgaagaagG
ATCGAGAAATTGAGAAACTAAAATTTGAAGCAGTTATCGAGAaattaaaa
cttcaaaatgaaaaattggaaaacaagGTTGAGATTGGAAACCTCAAATC
AGAAAACACTCTTTTGAAAGCTGAGAAACAGTTTGGTATCGATTTGAAAA
CGATATCAGATGGCAAGCAGAAGGTCGAAGAAGAACTTCGaaatataaaa
gaagaaaataccATTTTAAAAGAAGCAAAGTCAAACTTACAAAAAGAACT
TGATgttcttgaagaaaaaaataaaagtttgctGACAGAGAAAACTGACT
TTCAAGAATTATACGAAACCTGCAAACACGAAAAGGAAGAAGCTAACAAA
CAAATTAAAGTGTTAGAAGACCAAGTAGAAGGTCTTAAGGAAACTAACCA
GAGACTTCGAGACATCAAAggatttcaaaagaattttgctGATCTTTCTT
TAACAAAGAGAACACCGAAGGTtgagaaatatgattttaaACGAATGCCC
TATGGTGAATCAGTACTTGCAGGCGTCCATATGATTTTCGAGAAAACAAA
ATGCAAACATTATGACAGTTGGTATAAAAATCTTTACCAAAGAGTTTGTA
CcaatgctggattttttaaagaaatcctATTTCTCACCAACAGTGAACAC
TCGGATACTCTGCACATTAAAATTGACAAACGCGAACAAGGATGGGAAGC
TGAAAATCTTAAATGTGTTAAACTTTTACATTCTAGCGATAACACAAAAT
GTAAAGATTTGGAATATTTAGGTGGTAAAGAATGGTTTGTATCTGGTTTA
ACAAATTTTCATATAAGTAATTATTATATAACATTTGTAATGAAGGACTC
AGGTGAATAGATTTCTAAACGTTAAGCCAAAAAGGCTCAATATTCACAGT
ATTTACCCTaagagaactaattttcg Run BLAST on NCBI transcript from alignment at scaffold_185:130315..131988+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050727 ID=TCONS_00050727|Name=TCONS_00050727|organism=Clytia hemisphaerica|type=transcript|length=1674bp|location=Sequence derived from alignment at scaffold_185:130315..131988+ (Clytia hemisphaerica)
TATAAACTTTATGGGTAAACAAAGCAGCACAGAACGAGGTCGTAATAGGT
ATTATGTTGCTTTACAAAGACATTCTTATATATCTGataaagctaattaa
aattcagaaacaagAATGTCATAAGAATGTTATAAGAATATGTTtcaaat
aaagtaaaacagttTGATTGTGCACAGTATATAGTGAtcttttttattgg
aaagaaatcCTTAACTATGTGTCATGTTTCTTTCGAGCCCCTGGATTTGT
CTATCGTAGACTAGTACATTTTATTCTAACATTATGGTTAGTCTAGTCGA
TAGCCATAGTTGGTTATTCTTGtgtttaaaatgtttcttaaatCTCATCT
TGTTGCGTTGCCATGAATAATAGCAAGGACATAAAGCTATTACGAAGGTT
TAGAATTTCAGACGAGTGTGTACATTACAATAAGCGAACAAGGATTTGAA
CTCTTGTGTGTTGTTTTGgtagaaaagaatttttttggattttcagaTCT
CGAAGAGGACTTCACCTATCATATAAAGCAAGAGCATCCACAAACGACGA
AGGATATTTTTGAGACTTTTGAGATTGTACAAAGGGTCTAACAAACGACT
GAGATACTGATGATTTTGAAGAGCAGCTTATGAGAAATGGATCAACACAA
CGCAGCAGGCATTCGCGAAGATGAAAATCACCGGGTTGTTGTCGGAGAAG
AAAAGTCTCAACAAAACCTTAAAGAagaacttgaaagtttgaagaagGAT
CGAGAAATTGAGAAACTAAAATTTGAAGCAGTTATCGAGAaattaaaact
tcaaaatgaaaaattggaaaacaagGTTGAGATTGGAAACCTCAAATCAG
AAAACACTCTTTTGAAAGCTGAGAAACAGTTTGGTATCGATTTGAAAACG
ATATCAGATGGCAAGCAGAAGGTCGAAGAAGAACTTCGaaatataaaaga
agaaaataccATTTTAAAAGAAGCAAAGTCAAACTTACAAAAAGAACTTG
ATgttcttgaagaaaaaaataaaagtttgctGACAGAGAAAACTGACTTT
CAAGAATTATACGAAACCTGCAAACACGAAAAGGAAGAAGCTAACAAACA
AATTAAAGTGTTAGAAGACCAAGTAGAAGGTCTTAAGGAAACTAACCAGA
GACTTCGAGACATCAAAggatttcaaaagaattttgctGATCTTTCTTTA
ACAAAGAGAACACCGAAGGTtgagaaatatgattttaaACGAATGCCCTA
TGGTGAATCAGTACTTGCAGGCGTCCATATGATTTTCGAGAAAACAAAAT
GCAAACATTATGACAGTTGGTATAAAAATCTTTACCAAAGAGTTTGTACc
aatgctggattttttaaagaaatcctATTTCTCACCAACAGTGAACACTC
GGATACTCTGCACATTAAAATTGACAAACGCGAACAAGGATGGGAAGCTG
AAAATCTTAAATGTGTTAAACTTTTACATTCTAGCGATAACACAAAATGT
AAAGATTTGGAATATTTAGGTGGTAAAGAATGGTTTGTATCTGGTTTAAC
AAATTTTCATATAAGTAATTATTATATAACATTTGTAATGAAGGACTCAG
GTGAATAGATTTCTAAACGTTAAGCCAAAAAGGCTCAATATTCACAGTAT
TTACCCTaagagaactaattttcg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050727-exon-scaffold_185-1491911889:130315..130362 | TCONS_00050727-exon-scaffold_185-1491911889:130315..130362 | Clytia hemisphaerica | exon |
| TCONS_00050727-exon-scaffold_185-1510915933:130315..130362 | TCONS_00050727-exon-scaffold_185-1510915933:130315..130362 | Clytia hemisphaerica | exon |
| TCONS_00050727-exon-scaffold_185-1575043694:130315..130362 | TCONS_00050727-exon-scaffold_185-1575043694:130315..130362 | Clytia hemisphaerica | exon |
| TCONS_00050727-exon-scaffold_185-1491911889:130811..131988 | TCONS_00050727-exon-scaffold_185-1491911889:130811..131988 | Clytia hemisphaerica | exon |
| TCONS_00050727-exon-scaffold_185-1510915933:130811..131988 | TCONS_00050727-exon-scaffold_185-1510915933:130811..131988 | Clytia hemisphaerica | exon |
| TCONS_00050727-exon-scaffold_185-1575043694:130811..131988 | TCONS_00050727-exon-scaffold_185-1575043694:130811..131988 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_185 | supercontig | scaffold_185:130315..131988 + |
Blast
The following BLAST results are available for this feature:
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