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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050675 ID=TCONS_00050675|Name=TCONS_00050675|organism=Clytia hemisphaerica|type=transcript|length=1296bp
AATTTAACGGAGATTGCACCTTGCTGCCGTGAAGCATTTGCAATTTATCT
AATCAACAAAGTCGAAGAAAATGTCAGAAGTCCTATAGCTCGGAATCGTC
CAGCTCAAATCTTGATCTCGTCAATCAGTAATAGCTCTGCAAACAAGAAG
AAGAAAGTACAGTACAATCATCTCCGTAAACTCTTATGGGATTTCGCCGA
AGATCCACAATCATCCTATCCTGCTTTGGTGTTTTATTTTCTCAGTTGTG
CTATAATTATCCTCTCCATCATCGTGAATTGTGTGGAGACCGTCAACTGT
CCGACTGATTATTGTTTGCCAGTGTCCGGAAATCTTGGCGCAAACACAAC
ATGTAATTATTCTCCCAAATGTGGTGATCTCTATTCATCGATTTTTTTCG
TACTAGACACTTTTTGCGTCGTCTATTTCTGTATTGAATACTTGATCCGG
CTCTATGGTGCCCCGAACCGAATTAACTTCATCAAAAGTAAAATGGGGCT
CATTGACTTATTAGCCATAATGCCTTATTTTGTTGATCTAGCAATACGGT
ACTATTTCACTGGTTTGGGTGCAGCTTCTAAATATGTTGAGATGCTACGC
TCTTTTCGTATTGTGCGAATAATCAAACTTGTCCGCCATTCAGAACGCCT
TAAAAATCTGGCGTCCGCCATTACAAGTTCAATATCAGAActtggtttta
ttttgtttatgtaCTCGATTGTGGTGATTGTGTTTGCCAGTACGATCTTC
TACGCAGAGGCTGCCGGTAGACCACCTAAGGAATCAGTGTTTGGAAGCAT
CCCAGAAGCCATCTGGTACACAGTAGTCACAACTACAACTCTTGGCTATG
GAGATGTAGTACCGGAGACGATCCAAGGGAAATTGATTGGTTCATTGTGT
TGTCTAATGGGTGTCATTGTCATTGCCCTCCCTGTCCCCATCATTCAAAT
GAAGTCACAGACTCTAGTATCTGGAGATATTTGACCAGGACGAACTCAAC
TCAAAATCGAAAACATTGCAAGTGAAAATTGCACGGAACTTTCATGGCCT
CAGTTGAGAAAACAGAATCAAAAATGAACACGAAGAGTGGGATTGTTATA
AGTTTATTGCAAGATGATTATTTTAAACGCCATAacaaatattgtatttt
tataaataatgaatggatttttcgtttttttaaatTACGTTTAATCTAAT
ATAAAATGTCTATACAAATATTTATTGCTGTAAAATGACCAAGGCTTAAT
TGGGCAATGTGCCACAGGTCCCTGGCGTATTTCCTCAAATAAGCGC Run BLAST on NCBI protein sequence of TCONS_00050675-protein >TCONS_00050675-protein ID=TCONS_00050675-protein|Name=TCONS_00050675-protein|organism=Clytia hemisphaerica|type=polypeptide|length=327bp
NLTEIAPCCREAFAIYLINKVEENVRSPIARNRPAQILISSISNSSANKK
KKVQYNHLRKLLWDFAEDPQSSYPALVFYFLSCAIIILSIIVNCVETVNC
PTDYCLPVSGNLGANTTCNYSPKCGDLYSSIFFVLDTFCVVYFCIEYLIR
LYGAPNRINFIKSKMGLIDLLAIMPYFVDLAIRYYFTGLGAASKYVEMLR
SFRIVRIIKLVRHSERLKNLASAITSSISELGFILFMYSIVVIVFASTIF
YAEAAGRPPKESVFGSIPEAIWYTVVTTTTLGYGDVVPETIQGKLIGSLC
CLMGVIVIALPVPIIQMKSQTLVSGDI Run BLAST on NCBI transcript from alignment at scaffold_182:163107..166348- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050675 ID=TCONS_00050675|Name=TCONS_00050675|organism=Clytia hemisphaerica|type=transcript|length=3242bp|location=Sequence derived from alignment at scaffold_182:163107..166348- (Clytia hemisphaerica)
AATTTAACGGAGATTGCACCTTGCTGCCGTGAAGCATTTGCAATTTATCT
AATCAACAAAGTCGAAGAAAATGTCAGAAGTCCTATAGCTCGGAATCGTC
CAGCTCAAATCTTGATCTCGTCAATCAGTAATAGCTCTGCAAACAAGAAG
AAGAAAGTACAGTACAATCATCTCCGTAAACTCTTATGGGATTTCGCCGA
AGATCCACAATCATCCTATCCTGCTTTGGTGTTTTATTTTCTCAGTTGTG
CTATAATTATCCTCTCCATCATCGTGAATTGTGTGGAGACCGTCAACTGT
CCGACTGATTATTGTTTGCCAGTGTCCGGAAATCTTGGCGCAAACACAAC
ATGTAATTATTCTCCCAAATGTGGTGATCTCTATTCATCGATTTTTTTCG
TACTAGACACTTTTTGCGTCGTCTATTTCTGTATTGAATACTTGATCCGG
CTCTATGGTGCCCCGAACCGAATTAACTTCATCAAAAGTAAAATGGGGCT
CATTGACTTATTAGCCATAATGCCTTATTTTGTTGATCTAGCAATACGGT
ACTATTTCACTGGTTTGGGTGCAGCTTCTAAATATGTTGAGATGCTACGC
TCTTTTCGTATTGTGCGAATAATCAAACTTGTCCGCCATTCAGAACGCCT
TAAAAATCTGGCGTCCGCCATTACAAGTTCAATATCAGAACTTGGTTTTA
TTTTGTTTATGTACTCGATTGTGGTGATTGTGTTTGCCAGTACGATCTTC
TACGCAGAGGCTGCCGGTAGACCACCTAAGGAATCAGTGTTTGGAAGCAT
CCCAGAAGCCATCTGGTACACAGTAGTCACAACTACAACTCTTGGGTAAG
ACCTCCCTGACTTGACACACACAACGTTGTTTGAACGTTCATCTAACGTT
ACATGGATGCTGTGAGCGTTAGAAAGACGTTGTTTTGATTTTGTGTGTCT
GAACATCCTACCTTCTTCGTTTCTATTGCCTAATTCAAGACTTAAGTTTT
AGAAATGAGTTGGGGAATACCTTTTTGCCGAAGTACCTGATGAGTAGATC
ATGGTCTGCATTATCAAATTTCTCCACAAAAAATTGAGAAACCATTCTTG
CAATCATTTCCGCTATTTTATGAACCTACAGCCTGCCTCGCAACATAAAT
TACTCTTATTACCAACCGACCGACCCCTATTCGCCATAGTTTTTTCCATA
TATATCTATACATTTCGATAAAAAGGGACGTATTGAGAAGGAGCATATTC
TTTTTGTACATTTTAAAGCAAAAATGGTCAGATTTTCATCCAAAATTTTG
CCTAAAAAGCTTCCTTATTCTCACTTTTTACGCCCTTACACTTTTTCTAT
CATTTCGATCCTTACAGTTGTAGACTAGCAAGCGTCTGTCTTTCCTTGGA
CACAGGAACGCGGGAATAGTGCTTATAATAATAAAGAGTTCTTATAAAAA
ATAGAAATTGCCGCGNTGGTAGACCACCTAAGGAATCAGTGTTTGGAAGC
ATCCCAGAAGCCATCTGGTACACAGTGGTCACAACTACAACTCTTGGGTA
AGACCTTCCTAACTTGACACACACAACGTTGTTTGAACGTTCATCTAACG
TTACATGGATGTTGTGAGCTTTAGAAAGACGTTGTTTTGATTTTGTGTGT
CTGAACATCCTACCTTCTTCGTTTCTATTGCCTAATTCAAGACTTAAGTT
TTAGAAATGAGTTGGGGAATACCTTTTTGCCGAAGTACCTGTTGAGTAGA
TCATGGTCTGCATTATCAAATTTCTCCACAAAAAATTGAGAAACCATTCT
TGCAATCATTTCCGATATTTTATGAACCTACAGCCTGCCTCGCAACATAA
ATTACTCTTATTACTAACCGACCGACCCCTATTCGCCATAGTTTTTCCAT
ATATATCTATACATTTCGATAAAAAGGGACGTATTGAGAAGGAGCATATT
CTTTTTGTACATTTTAAAGCAAAAATGGTCAGATTTTCATCCAAAATTTT
GCCTAAAAAGCTTCCTTATTCTCACTTTTTACGCCCTTACACTTTTTCTA
TCATTTCGATCCTTACAGTTGTAGACTAGCAAGCGTCTGTCTCTTCCTTG
GACACAGGAACGCGGGAATAGTGCTTATAATAATAAAGAGTTCTTATAAA
AAATAGAAATTGCCGCGGGAGAGTGTTTTGGTTGTATTCAGTGAACATAT
ATAGAAATAGATCCTATTGCAAGTTTAATCTGCAGCGAAATACAACGACG
TGGTTTACTAGTCTATACAGTTGCGCTCCAGGAAGCCTGAAAAACGTATC
CTCAAGATGCATAACCTTGAGTGCCTTCCCCAGGTCAATGACAACGTAGG
AAAAACCTTCTCCTCTTTCTTCTTTAGCTATGGAGATGTAGTACCGGAGA
CGATCCAAGGGAAATTGATTGGTTCATTGTGTTGTCTAATGGGTGTCATT
GTCATTGCCCTCCCTGTCCCCATCATTCAAATGAAGGTAGGGGAATTTAA
GGGATTTATTCATTANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAAAGGGTCCC
AAAATCACCAAAATTTTGTCTCTCAAAGGGTCGATTTTCGATTTTCGGCT
CGGACATACCCGTCACCTCGCAAACCTAGTACCCCCCCTCCCGGGGTAAA
AAGTCAACTGTTGTTAGGGTCGAATTTGAGAACACTTTTTTAATCATATT
GACAAAGTTTTAACAAGATTTTTAAGTTGTAATATACCGGCATCGTATGC
CGGTACCCCTTTTGCCCAAGTACCTCCTCCCTCCGCCAATGTATGTGATA
TTAATGTATAGTCAGGTATTTTATTGTTGTTTTTTCTCTCACACATTTAG
TCACAGACTCTAGTATCTGGAGATATTTGACCAGGACGAACTCAACTCAA
AATCGAAAACATTGCAAGTGAAAATTGCACGGAACTTTCATGGCCTCAGT
TGAGAAAACAGAATCAAAAATGAACACGAAGAGTGGGATTGTTATAAGTT
TATTGCAAGATGATTATTTTAAACGCCATAACAAATATTGTATTTTTATA
AATAATGAATGGATTTTTCGTTTTTTTAAATTACGTTTAATCTAATATAA
AATGTCTATACAAATATTTATTGCTGTAAAATGACCAAGGCTTAATTGGG
CAATGTGCCACAGGTCCCTGGCGTATTTCCTCAAATAAGCGC Coding sequence (CDS) from alignment at scaffold_182:163107..166348- >TCONS_00050675 ID=TCONS_00050675|Name=TCONS_00050675|organism=Clytia hemisphaerica|type=CDS|length=2952bp|location=Sequence derived from alignment at scaffold_182:163107..166348- (Clytia hemisphaerica)
TCACAGACTCTAGTATCTGGAGATATTTGACTATGGAGATGTAGTACCGG
AGACGATCCAAGGGAAATTGATTGGTTCATTGTGTTGTCTAATGGGTGTC
ATTGTCATTGCCCTCCCTGTCCCCATCATTCAAATGAAGAATTTAACGGA
GATTGCACCTTGCTGCCGTGAAGCATTTGCAATTTATCTAATCAACAAAG
TCGAAGAAAATGTCAGAAGTCCTATAGCTCGGAATCGTCCAGCTCAAATC
TTGATCTCGTCAATCAGTAATAGCTCTGCAAACAAGAAGAAGAAAGTACA
GTACAATCATCTCCGTAAACTCTTATGGGATTTCGCCGAAGATCCACAAT
CATCCTATCCTGCTTTGGTGTTTTATTTTCTCAGTTGTGCTATAATTATC
CTCTCCATCATCGTGAATTGTGTGGAGACCGTCAACTGTCCGACTGATTA
TTGTTTGCCAGTGTCCGGAAATCTTGGCGCAAACACAACATGTAATTATT
CTCCCAAATGTGGTGATCTCTATTCATCGATTTTTTTCGTACTAGACACT
TTTTGCGTCGTCTATTTCTGTATTGAATACTTGATCCGGCTCTATGGTGC
CCCGAACCGAATTAACTTCATCAAAAGTAAAATGGGGCTCATTGACTTAT
TAGCCATAATGCCTTATTTTGTTGATCTAGCAATACGGTACTATTTCACT
GGTTTGGGTGCAGCTTCTAAATATGTTGAGATGCTACGCTCTTTTCGTAT
TGTGCGAATAATCAAACTTGTCCGCCATTCAGAACGCCTTAAAAATCTGG
CGTCCGCCATTACAAGTTCAATATCAGAACTTGGTTTTATTTTGTTTATG
TACTCGATTGTGGTGATTGTGTTTGCCAGTACGATCTTCTACGCAGAGGC
TGCCGGTAGACCACCTAAGGAATCAGTGTTTGGAAGCATCCCAGAAGCCA
TCTGGTACACAGTAGTCACAACTACAACTCTTGGTCACAGACTCTAGTAT
CTGGAGATATTTGACTATGGAGATGTAGTACCGGAGACGATCCAAGGGAA
ATTGATTGGTTCATTGTGTTGTCTAATGGGTGTCATTGTCATTGCCCTCC
CTGTCCCCATCATTCAAATGAAGAATTTAACGGAGATTGCACCTTGCTGC
CGTGAAGCATTTGCAATTTATCTAATCAACAAAGTCGAAGAAAATGTCAG
AAGTCCTATAGCTCGGAATCGTCCAGCTCAAATCTTGATCTCGTCAATCA
GTAATAGCTCTGCAAACAAGAAGAAGAAAGTACAGTACAATCATCTCCGT
AAACTCTTATGGGATTTCGCCGAAGATCCACAATCATCCTATCCTGCTTT
GGTGTTTTATTTTCTCAGTTGTGCTATAATTATCCTCTCCATCATCGTGA
ATTGTGTGGAGACCGTCAACTGTCCGACTGATTATTGTTTGCCAGTGTCC
GGAAATCTTGGCGCAAACACAACATGTAATTATTCTCCCAAATGTGGTGA
TCTCTATTCATCGATTTTTTTCGTACTAGACACTTTTTGCGTCGTCTATT
TCTGTATTGAATACTTGATCCGGCTCTATGGTGCCCCGAACCGAATTAAC
TTCATCAAAAGTAAAATGGGGCTCATTGACTTATTAGCCATAATGCCTTA
TTTTGTTGATCTAGCAATACGGTACTATTTCACTGGTTTGGGTGCAGCTT
CTAAATATGTTGAGATGCTACGCTCTTTTCGTATTGTGCGAATAATCAAA
CTTGTCCGCCATTCAGAACGCCTTAAAAATCTGGCGTCCGCCATTACAAG
TTCAATATCAGAACTTGGTTTTATTTTGTTTATGTACTCGATTGTGGTGA
TTGTGTTTGCCAGTACGATCTTCTACGCAGAGGCTGCCGGTAGACCACCT
AAGGAATCAGTGTTTGGAAGCATCCCAGAAGCCATCTGGTACACAGTAGT
CACAACTACAACTCTTGGTCACAGACTCTAGTATCTGGAGATATTTGACT
ATGGAGATGTAGTACCGGAGACGATCCAAGGGAAATTGATTGGTTCATTG
TGTTGTCTAATGGGTGTCATTGTCATTGCCCTCCCTGTCCCCATCATTCA
AATGAAGAATTTAACGGAGATTGCACCTTGCTGCCGTGAAGCATTTGCAA
TTTATCTAATCAACAAAGTCGAAGAAAATGTCAGAAGTCCTATAGCTCGG
AATCGTCCAGCTCAAATCTTGATCTCGTCAATCAGTAATAGCTCTGCAAA
CAAGAAGAAGAAAGTACAGTACAATCATCTCCGTAAACTCTTATGGGATT
TCGCCGAAGATCCACAATCATCCTATCCTGCTTTGGTGTTTTATTTTCTC
AGTTGTGCTATAATTATCCTCTCCATCATCGTGAATTGTGTGGAGACCGT
CAACTGTCCGACTGATTATTGTTTGCCAGTGTCCGGAAATCTTGGCGCAA
ACACAACATGTAATTATTCTCCCAAATGTGGTGATCTCTATTCATCGATT
TTTTTCGTACTAGACACTTTTTGCGTCGTCTATTTCTGTATTGAATACTT
GATCCGGCTCTATGGTGCCCCGAACCGAATTAACTTCATCAAAAGTAAAA
TGGGGCTCATTGACTTATTAGCCATAATGCCTTATTTTGTTGATCTAGCA
ATACGGTACTATTTCACTGGTTTGGGTGCAGCTTCTAAATATGTTGAGAT
GCTACGCTCTTTTCGTATTGTGCGAATAATCAAACTTGTCCGCCATTCAG
AACGCCTTAAAAATCTGGCGTCCGCCATTACAAGTTCAATATCAGAACTT
GGTTTTATTTTGTTTATGTACTCGATTGTGGTGATTGTGTTTGCCAGTAC
GATCTTCTACGCAGAGGCTGCCGGTAGACCACCTAAGGAATCAGTGTTTG
GAAGCATCCCAGAAGCCATCTGGTACACAGTAGTCACAACTACAACTCTT
GG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050675-exon-scaffold_182-1575043694:165504..166348 | TCONS_00050675-exon-scaffold_182-1575043694:165504..166348 | Clytia hemisphaerica | exon |
| TCONS_00050675-exon-scaffold_182-1575043694:163863..163971 | TCONS_00050675-exon-scaffold_182-1575043694:163863..163971 | Clytia hemisphaerica | exon |
| TCONS_00050675-exon-scaffold_182-1575043694:163107..163448 | TCONS_00050675-exon-scaffold_182-1575043694:163107..163448 | Clytia hemisphaerica | exon |
| TCONS_00050675-exon-scaffold_182-1510915933:165504..166348 | TCONS_00050675-exon-scaffold_182-1510915933:165504..166348 | Clytia hemisphaerica | exon |
| TCONS_00050675-exon-scaffold_182-1510915933:163863..163971 | TCONS_00050675-exon-scaffold_182-1510915933:163863..163971 | Clytia hemisphaerica | exon |
| TCONS_00050675-exon-scaffold_182-1510915933:163107..163448 | TCONS_00050675-exon-scaffold_182-1510915933:163107..163448 | Clytia hemisphaerica | exon |
| TCONS_00050675-exon-scaffold_182-1491911889:165504..166348 | TCONS_00050675-exon-scaffold_182-1491911889:165504..166348 | Clytia hemisphaerica | exon |
| TCONS_00050675-exon-scaffold_182-1491911889:163863..163971 | TCONS_00050675-exon-scaffold_182-1491911889:163863..163971 | Clytia hemisphaerica | exon |
| TCONS_00050675-exon-scaffold_182-1491911889:163107..163448 | TCONS_00050675-exon-scaffold_182-1491911889:163107..163448 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_182 | supercontig | scaffold_182:163107..166348 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: Cellular Component
| Term | Definition |
|---|
| GO:0008076 | voltage-gated potassium channel complex |
| GO:0016020 | membrane |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005249 | voltage-gated potassium channel activity |
| GO:0005216 | ion channel activity |
Vocabulary: Biological Process
| Term | Definition |
|---|
| GO:0006813 | potassium ion transport |
| GO:0055085 | transmembrane transport |
| GO:0006811 | ion transport |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| biological_process |
GO:0006811 |
ion transport |
| biological_process |
GO:0006813 |
potassium ion transport |
| biological_process |
GO:0055085 |
transmembrane transport |
| cellular_component |
GO:0016020 |
membrane |
| cellular_component |
GO:0008076 |
voltage-gated potassium channel complex |
| molecular_function |
GO:0005216 |
ion channel activity |
| molecular_function |
GO:0005249 |
voltage-gated potassium channel activity |
Blast
BLAST of TCONS_00050675 vs. Swiss-Prot (Human)
Match: KCND3 (Potassium voltage-gated channel subfamily D member 3 OS=Homo sapiens GN=KCND3 PE=1 SV=3) HSP 1 Score: 210.69 bits (535), Expect = 1.352e-60 Identity = 121/258 (46.90%), Postives = 163/258 (63.18%), Query Frame = 1
Query: 172 LRKLLWDFAEDPQSSYPALVFYFLSCAIIILSIIVNCVETVNCPTDYCLPVSGNLGANTTCNYSPKCGDLYSSIFFVLDTFCVVYFCIEYLIRLYGAPNRINFIKSKMGLIDLLAIMPYFVDLAIRYYFTGLGAASKYVEMLRSFRIVRIIKLVRHSERLKNLASAITSSISELGFILFMYSIVVIVFASTIFYAEAAGRPPKESVFGSIPEAIWYXXXXXXXLGYGDVVPETIQGKLIGSLCCLMGVIVIALPVPII 945
R+ +W E+P +S ALVFY+++ I +S+I N VETV C T +P S L CG+ YS FF LDT CV+ F +EYL+RL+ AP+R FI+S M +ID++AIMPY++ L + T S LR FR+ RI K RHS+ L+ L + S SELGF+LF ++ +I+FA+ +FYAE K F SIP + WYT+VT TTLGYGD+VP+TI GK+ GS+C L GV+VIALPVP+I
Sbjct: 165 FRQTMWRAFENPHTSTLALVFYYVTGFFIAVSVITNVVETVPCGT---VPGSKEL----------PCGERYSVAFFCLDTACVMIFTVEYLLRLFAAPSRYRFIRSVMSIIDVVAIMPYYIGLVM----TNNEDVSGAFVTLRVFRVFRIFKFSRHSQGLRILGYTLKSCASELGFLLFSLTMAIIIFATVMFYAEKGSSASK---FTSIPASFWYTIVTMTTLGYGDMVPKTIAGKIFGSICSLSGVLVIALPVPVI 402
The following BLAST results are available for this feature:
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