TCONS_00050549 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050549
Unique NameTCONS_00050549
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length959

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050549 ID=TCONS_00050549|Name=TCONS_00050549|organism=Clytia hemisphaerica|type=transcript|length=959bp
AATATTGAAGAAACACGCACTGGCGATGACTGCGAAAAAATCGACCTCGA
AGAAATAGCTAAACGATTCCAACAAGCTATCTTATTGGTTGGCCAAGCAA
TAAATGCTACCAACTTCTTCAGACGTAAGAATGCGTTGACTGCCCTAGGT
ATCAAAGAAAGTGAAGTAAGCAGCTGGTTACGAGAAACATTAGTTGATGA
CCTAGAAAACAGTGATGGTAAACTATTTGGAgagaaaatgtggaaaactc
tAACAAAACAATCCAAAGCAGCAGGCTACACTTATCTTAAACAATACCTA
TTTTCCAGACGACTGCAGGACCAAAAAAGGAAACCCTTTTCATGGGGCTC
TTCCCAGACGAGCCGTGGAGAAGAGCGTCAACACCCCCCCTGCTGAAGGA
CATGGCTCAAACAACAGACATCCATCCAACAAGAAATGGAGAGGCAACCT
GAACGGACCACCAAGACGAGGTTACTACAGAGGTAGAGGAAGAAGAggaa
aataacattttatttacatttatttACTTAGGATTTTACTGATGTTCATA
TCATAGTTTACTTCATGTTTATAtttcgaaaaaagaaaataatctaCGCC
ACAGGTGGCGTTTACAAAATTGACATTTACTTATTACACTCCATTTGCAT
CACTTATAGGACGCATCTACGATGCTTTTTCTTAGCCCTCGTTCCACTCA
CTCTAGACTGCGTCCGCTCGGCATAATGAATTCGTCTGATTNTTTTTCTT
AGCCTTCGTTCCACTCACTCTAGACTGCGTCCGCTCGGCATAATGAATTC
GTCTGATTTTAAGctcataaaattcaaatttcccatTACGGCCTTCGGCc
taggaaaattttcaaatttgattgataACTTGTGCTGAAGTGTACGCTGA
ATTTGCACATTATGCagaactaatttttgtggtTGACACCCACTCTTTGC
TGATCGGTG
Run BLAST on NCBI

protein sequence of TCONS_00050549-protein

>TCONS_00050549-protein ID=TCONS_00050549-protein|Name=TCONS_00050549-protein|organism=Clytia hemisphaerica|type=polypeptide|length=131bp
NIEETRTGDDCEKIDLEEIAKRFQQAILLVGQAINATNFFRRKNALTALG
IKESEVSSWLRETLVDDLENSDGKLFGEKMWKTLTKQSKAAGYTYLKQYL
FSRRLQDQKRKPFSWGSSQTSRGEERQHPPC
Run BLAST on NCBI

transcript from alignment at scaffold_179:389017..393296-

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050549 ID=TCONS_00050549|Name=TCONS_00050549|organism=Clytia hemisphaerica|type=transcript|length=4280bp|location=Sequence derived from alignment at scaffold_179:389017..393296- (Clytia hemisphaerica)
AATATTGAAGAAACACGCACTGGCGATGACTGCGAAAAAATCGACCTCGA
AGAAATAGCTAAACGATTCCAACAAGCTATCTTATTGGTTGGCCAAGCAA
TAAATGCTACCAACTTCTTCAGACGTAAGAATGCGTTGACTGCCCTAGGT
ATCAAAGAAAGTGAAGTAAGCAGCTGGTTACGAGAAACATTAGTTGATGA
CCTAGAAAACAGTGATGGTAAACTATTTGGAGAGAAAATGTGGAAAACTC
TAACAAAACAATCCAAAGCAGCAGGCTACACTTATCTTAAACAATACCTA
TTTTCCAGACGACTGCAGGACCAAAAAAGGAAACCCTTTTCATGGGGCTC
TTCCCAGACGAGCCGTGGAGAAGAGCGTCAACACCCCCCCTGCTGAAGGA
CATGGCTCAAACAACAGACATCCATCCAACAAGAAATGGAGAGGTAAGAG
AAAATCTACCAAACCTGACAGCCCCCCTTTCCAGTCAAGCAAATGCTCAA
TTAGAGTTTCAAACACACTACCCTGGGAAAATACACCCAGGGATAGAAAA
TCTCCTAGAAGAGATAATAGTACCCCAGTCAACATTGATTGCTGGCAAAA
CAAAATTATTTCAAAAGAATTGGGCCAAAATAACCCAAGACCCATGCATC
CTGGAGACCATCTCAGGCTTGTCAATCCCAGTAATGGGAAAACCAATTCA
AAAGACACCACCAAGGCAAATAAATTTCGACTCAAACATGAAAGCTCTAA
TACGGGCAGAGATAAGAACTTTACTGGAAAAAGGGGCTGTAAAGAGAGTT
CTTTACAAGCAAGGCCAGGTCCTGTCCACTCTGTTTTTGAAAGAGAAAAA
AGAACCAGGGAAATTCAGACCTGTGATAAACTTGAGGGAACTCAACTCTC
ATATCCCATACCAAAAATTCAAGATGGAGACCCTAAGGGATGTAAAGAAC
ATTCTTCAGAAGGGGGACTTCATGGTCAAAGTGGATCTGAAAGATGCATA
TTTTTCTATCCCAATACACCCACAGTCGATGAAGTATGTGAGATTCAGCT
GGGAGGGAAACCTATACAAGTTTCAATGCCTAATGTTTGGACTAGGGCCA
GCTCCCAAAATATTCACGAAACTTCTCAAGGTGCCCATTTCTCTATTGAG
AAGATTACAGATAAAACTGATAATCTACATAGACGACATCCTGATTGTAG
CAAGGTCAAAGGAGGAGGCCATCTTCTCCAGAGACACAGCGATCTTCTTA
TTGGAGANNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNGAAGAATTAAAGTGGTGGATAGGAAACTTCTCCTCAGGAAAC
GGCAAGGACATAAACATTCGTCCCCCAGATTTAATTATAAGCTCAGATGC
GGCAAAGGGAAAAATGGGGGGATGGGGAGCTCATTGTGGTCAAAGCTCCA
CAGGAGGGCTATGGACAGAATCAGAGAAAAGGGAACACATAAATATCCTA
GAAATGAAAGCAGCCCTGATAGCATTGAAAACCTTTATAAAGGGGAATCA
CCTAAGGTCAGTACATCTACTGATAGACAACCAAGTAGCCCTGGCACATA
TTGTGAAAATGGGTCGGCCGACAAACTCTACCCTAATAAGCCTGTCAAAA
GAGATCTGGTCATTTTTGAACCAAAAGAACATCAGCCTCACTGCAGAATA
TATTCCATCGACCCTAAACAAGGAGGCCGACTTCGAGTCCAGGAATGCAA
AAGACTGGGGGGACTGGAAACTAGCAAGGCAAACGTTCAAACACATAATG
AATGTGTGGGGACCCCCAGAAATCGATCTTTTTGCCTCAAGAACCTCTCA
CCAACTACAGACTTACTACAGTTGGAAANNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTGATT
TTAAGCGATATAAAATTTGAAAATTTTCCTAGGCCGAAGGCCGTAATGGG
AAATTTGAATTTTATGAGCTTAAAATCAGACGAATTCATTCCCATCCCAC
CTCCCTACTTTACAGTGTTAAACAAGTTCAATGCGACAAAACTCAAAAAT
ACTTTCTCGTTTAGGCAACCTGAACGGACCACCAAGACGAGGTTACTACA
GAGGTAGAGGAAGAAGAGGAAAATAACATTTTATTTACATTTATTTACTT
AGGATTTTACTGATGTTCATATCATAGTTTACTTCATGTTTATATTTCGA
AAAAAGAAAATAATCTACGCCACAGGTGGCGTTTACAAAATTGACATTTA
CTTATTACACTCCATTTGCATCACTTATAGGACGCATCTACGATGCTTTT
TCTTAGCCCTCGTTCCACTCACTCTAGACTGCGTCCGCTCGGCATAATGA
ATTCGTCTGATTNTTTTTCTTAGCCTTCGTTCCACTCACTCTAGACTGCG
TCCGCTCGGCATAATGAATTCGTCTGATTTTAAGCTCATAAAATTCAAAT
TTCCCATTACGGCCTTCGGCCTAGGAAAATTTTCAAATTTGATTGATAAC
TTGTGCTGAAGTGTACGCTGAATTTGCACATTATGCAGAACTAATTTTTG
TGGTTGACACCCACTCTTTGCTGATCGGTG

Coding sequence (CDS) from alignment at scaffold_179:389017..393296-

>TCONS_00050549 ID=TCONS_00050549|Name=TCONS_00050549|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_179:389017..393296- (Clytia hemisphaerica)
AATATTGAAGAAACACGCACTGGCGATGACTGCGAAAAAATCGACCTCGA
AGAAATAGCTAAACGATTCCAACAAGCTATCTTATTGGTTGGCCAAGCAA
TAAATGCTACCAACTTCTTCAGACGTAAGAATGCGTTGACTGCCCTAGGT
ATCAAAGAAAGTGAAGTAAGCAGCTGGTTACGAGAAACATTAGTTGATGA
CCTAGAAAACAGTGATGGTAAACTATTTGGAGAGAAAATGTGGAAAACTC
TAACAAAACAATCCAAAGCAGCAGGCTACACTTATCTTAAACAATACCTA
TTTTCCAGACGACTGCAGGACCAAAAAAGGAAACCCTTTTCATGGGGCTC
TTCCCAGACGAGCCGTGGAGAAGAGCGTCAACACCCCCCCTGCTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032013XLOC_032013Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050549-proteinTCONS_00050549-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050549-exon-scaffold_179-1575043694:392854..393296TCONS_00050549-exon-scaffold_179-1575043694:392854..393296Clytia hemisphaericaexon
TCONS_00050549-exon-scaffold_179-1575043694:389017..389532TCONS_00050549-exon-scaffold_179-1575043694:389017..389532Clytia hemisphaericaexon
TCONS_00050549-exon-scaffold_179-1510915933:392854..393296TCONS_00050549-exon-scaffold_179-1510915933:392854..393296Clytia hemisphaericaexon
TCONS_00050549-exon-scaffold_179-1510915933:389017..389532TCONS_00050549-exon-scaffold_179-1510915933:389017..389532Clytia hemisphaericaexon
TCONS_00050549-exon-scaffold_179-1491911889:392854..393296TCONS_00050549-exon-scaffold_179-1491911889:392854..393296Clytia hemisphaericaexon
TCONS_00050549-exon-scaffold_179-1491911889:389017..389532TCONS_00050549-exon-scaffold_179-1491911889:389017..389532Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:389017..393296 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.166443	0.487529	0.0806833	0.254104	3.27676	3.67085	5.40823	5.21831	3.58842	3.17403	3.66046	2.83824	0.754184	1.01023	2.01859	2.31794	1.56708	1.42631	0.810145	0.306245	0.957119	0.723746	0.661686	0.908688	1.7491	0.930726	0.774202	0.629595	1.15785	0.621077
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050549 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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