TCONS_00050576 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050576
Unique NameTCONS_00050576
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length397

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050576 ID=TCONS_00050576|Name=TCONS_00050576|organism=Clytia hemisphaerica|type=transcript|length=397bp
TCAATCAGAGATTATGTACGTAAAATCAAAGATTCCAGAGCAAAACTCAG
ACAAATCGTGGACACAAAGATTCAACAACAAAACGATGGTAAGAAAGACG
CTCTACTTTTCTCCATCAAGGACACTACACGAACAGTCAACGACCTTATC
AAAGAATTCGAACAGAATACATCCAATCTCACCGATGAAGAGCTTATCCA
GATCAAATCCAGTCTTGCCAGCAGAGATAACCAAATCGACAGAATTGCCA
AGAAATATCAATCTATTCTGCTAGAAAAACCAGTTTCAACTCCTGAAACC
TTATTGGAAATTAAAACATTAGGAGAGAGGTATGAACTATTAATTACAAC
AAAGTCAAATTTTGTCGAACACTTAACCTCTTCTCTTGGAGATCGTG
Run BLAST on NCBI

protein sequence of TCONS_00050576-protein

>TCONS_00050576-protein ID=TCONS_00050576-protein|Name=TCONS_00050576-protein|organism=Clytia hemisphaerica|type=polypeptide|length=132bp
SIRDYVRKIKDSRAKLRQIVDTKIQQQNDGKKDALLFSIKDTTRTVNDLI
KEFEQNTSNLTDEELIQIKSSLASRDNQIDRIAKKYQSILLEKPVSTPET
LLEIKTLGERYELLITTKSNFVEHLTSSLGDR
Run BLAST on NCBI

transcript from alignment at scaffold_179:154014..154410

Legend: exonthree_prime_UTRCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050576 ID=TCONS_00050576|Name=TCONS_00050576|organism=Clytia hemisphaerica|type=transcript|length=397bp|location=Sequence derived from alignment at scaffold_179:154014..154410 (Clytia hemisphaerica)
CACGATCTCCAAGAGAAGAGGTTAAGTGTTCGACAAAATTTGACTTTGTT
GTAATTAATAGTTCATACCTCTCTCCTAATGTTTTAATTTCCAATAAGGT
TTCAGGAGTTGAAACTGGTTTTTCTAGCAGAATAGATTGATATTTCTTGG
CAATTCTGTCGATTTGGTTATCTCTGCTGGCAAGACTGGATTTGATCTGG
ATAAGCTCTTCATCGGTGAGATTGGATGTATTCTGTTCGAATTCTTTGAT
AAGGTCGTTGACTGTTCGTGTAGTGTCCTTGATGGAGAAAAGTAGAGCGT
CTTTCTTACCATCGTTTTGTTGTTGAATCTTTGTGTCCACGATTTGTCTG
AGTTTTGCTCTGGAATCTTTGATTTTACGTACATAATCTCTGATTGA

Coding sequence (CDS) from alignment at scaffold_179:154014..154410

>TCONS_00050576 ID=TCONS_00050576|Name=TCONS_00050576|organism=Clytia hemisphaerica|type=CDS|length=396bp|location=Sequence derived from alignment at scaffold_179:154014..154410 (Clytia hemisphaerica)
ACGATCTCCAAGAGAAGAGGTTAAGTGTTCGACAAAATTTGACTTTGTTG
TAATTAATAGTTCATACCTCTCTCCTAATGTTTTAATTTCCAATAAGGTT
TCAGGAGTTGAAACTGGTTTTTCTAGCAGAATAGATTGATATTTCTTGGC
AATTCTGTCGATTTGGTTATCTCTGCTGGCAAGACTGGATTTGATCTGGA
TAAGCTCTTCATCGGTGAGATTGGATGTATTCTGTTCGAATTCTTTGATA
AGGTCGTTGACTGTTCGTGTAGTGTCCTTGATGGAGAAAAGTAGAGCGTC
TTTCTTACCATCGTTTTGTTGTTGAATCTTTGTGTCCACGATTTGTCTGA
GTTTTGCTCTGGAATCTTTGATTTTACGTACATAATCTCTGATTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_032030XLOC_032030Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050576-exon-scaffold_179-1491911889:154014..154410TCONS_00050576-exon-scaffold_179-1491911889:154014..154410Clytia hemisphaericaexon
TCONS_00050576-exon-scaffold_179-1510915933:154014..154410TCONS_00050576-exon-scaffold_179-1510915933:154014..154410Clytia hemisphaericaexon
TCONS_00050576-exon-scaffold_179-1575043694:154014..154410TCONS_00050576-exon-scaffold_179-1575043694:154014..154410Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050576-proteinTCONS_00050576-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_179supercontigscaffold_179:154014..154410 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.9065	4.23254	2.56402	3.34466	5.08976	1.8099	1.94095	3.40704	1.27219	3.93952	0.76476	0.628404	1.00405	0.521357	0	0.344986	0	0.580808	0.200604	2.09918	0.364914	0.266988	0.649118	0.786857	1.8235	1.4466	0.776282	0.276156	1.04727	1.06701
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050576 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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