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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050540 ID=TCONS_00050540|Name=TCONS_00050540|organism=Clytia hemisphaerica|type=transcript|length=827bp
aatttcaccacggcaattcggccacctaaatttttgcatacaattcaata
tggcggacgcaaaggcgaaaaggtctatgcaATCAATATTGATCAATGGA
CAATAAGGTCCAAGAAATGTGATATGGTGCTATCTATAAAGTTTCAGCCA
ATTCGATGTGACTCGTGTAACCTGTACCGTAAAACCcttttaaaaatatc
atcaCGACAGAAAAATGTATTATCAAGTGCTGTCAAAAAGACACGTCCAT
TATCATCATGCAACAAGAGACAACTGCGAAAAAGGctgtttgaaaacaaa
tctcaaaTTAGagatttacaaaaacaaaagagaaaattGGAGAAACAAGT
TGCAAGATCAGTCAAACGAGATGGTATCCAACTTGAGAAAAGCACTCACA
AATTAGTGTCCAGGATTTCTAAAACTTGTCCATTTCCAAAGGACTCAGTT
ATGTATTTACTTTGGGAGCAACAGCGAAAGGCTTGTAGGTTGTCCAAAAT
GAAATCAATGCGTTGGCATCCTATCATCATTCGCTGGTGTCTTGGAATCT
ACCTCAAGTCTCCAGgtgCCTATGACCATATACGGGATACTGGCTTCTTA
AAGCTCCCCCATCGGACCACGCTCAACCAGTACACCAATTTTACTGATAT
TGGAACCGGTTATAACCCAGACGTCATCAAGCGACTGTATGACGATTACA
AACTTGATGATATGCCTGAAGGCCACAGAATCTGCACTCTTCTTTTTgac
gaaatgaaaattttttaattctaattttaataataataattttaattttt
ttaattccttTTTGGGCCAAAATTTAC Run BLAST on NCBI protein sequence of TCONS_00050540-protein >TCONS_00050540-protein ID=TCONS_00050540-protein|Name=TCONS_00050540-protein|organism=Clytia hemisphaerica|type=polypeptide|length=255bp
NFTTAIRPPKFLHTIQYGGRKGEKVYAINIDQWTIRSKKCDMVLSIKFQP
IRCDSCNLYRKTLLKISSRQKNVLSSAVKKTRPLSSCNKRQLRKRLFENK
SQIRDLQKQKRKLEKQVARSVKRDGIQLEKSTHKLVSRISKTCPFPKDSV
MYLLWEQQRKACRLSKMKSMRWHPIIIRWCLGIYLKSPGAYDHIRDTGFL
KLPHRTTLNQYTNFTDIGTGYNPDVIKRLYDDYKLDDMPEGHRICTLLFD
EMKIF Run BLAST on NCBI transcript from alignment at scaffold_179:115266..116633- Legend: exonCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050540 ID=TCONS_00050540|Name=TCONS_00050540|organism=Clytia hemisphaerica|type=transcript|length=1368bp|location=Sequence derived from alignment at scaffold_179:115266..116633- (Clytia hemisphaerica)
AATTTCACCACGGCAATTCGGCCACCTAAATTTTTGCATACAATTCAATA
TGGCGGACGCAAAGGCGAAAAGGTCTATGCAATCAATATTGATCAATGGA
CAATAAGGTCCAAGAAATGTGATATGGTGCTATCTATAAAGTTTCAGGTA
GGTAAAACAAACCACTTTTTGCATTTATTGTTAATAATTTTCTTCAAACA
CCAAAAGTTATTGCATAGAGATACACCGGCATAAAAAGGTTGGTTGTTTT
GGCTGGCAATGTAATGGTAAATGAATTTCTAGCTCACACACTTTGTCACA
CTGTCTGCGTTTTTAACAGTATATATAAATCACTTTATTTATTAAATCAA
TGAAAAAATTTCTCAGCTTTCTGATTTTTTAATACGAAATTGGCAACGAT
AACTTGAAATTTTAAGGATAACTTGATAAGTAAGTCGATACAACAGATGA
CAGGTCAAAGTAAAGTAAAGTTTACAATTTCATTTTAGCCAATTCGATGT
GACTCGTGTAACCTGTACCGTAAAACCCTTTTAAAAATATCATCACGACA
GAAAAATGTATTATCAAGTGCTGTCAAAAAGACACGTCCATTATCATCAT
GCAACAAGAGACAACTGCGAAAAAGGCTGTTTGAAAACAAATCTCAAATT
AGAGATTTACAAAAACAAAAGAGAAAATTGGAGAAACAAGTTGCAAGATC
AGTCAAACGAGATGGTATCCAACTTGAGAAAAGCACTCACAAATTAGTGT
CCAGGATTTCTAAAACTTGTCCATTTCCAAAGGACTCAGTTATGTATTTA
CTTTGGGAGCAACAGCGAAAGGCTTGTAGGTTGTCCAAAATGAAATCAAT
GCGTTGGCATCCTATCATCATTCGCTGGTGTCTTGGAATCTACCTCAAGT
CTCCAGGTACAATTTTTGCATAATGAAAGTTACCATGCGTCTCCTCCAAA
AGCAGGGGCAGTTTTTTTGCAGATTTAAACAAGGTCAAAATATTTTTTTT
CTGGGGGGGGGACAGACTCAGGAGGAAACTATGGCTGATTCTAAAATTTA
ATTCAATCGAACCTGCTTGATGCTAAATCAATTACATTATTTTTTTTATT
TTTCAGGTGCCTATGACCATATACGGGATACTGGCTTCTTAAAGCTCCCC
CATCGGACCACGCTCAACCAGTACACCAATTTTACTGATATTGGAACCGG
TTATAACCCAGACGTCATCAAGCGACTGTATGACGATTACAAACTTGATG
ATATGCCTGAAGGCCACAGAATCTGCACTCTTCTTTTTGACGAAATGAAA
ATTTTTTAATTCTAATTTTAATAATAATAATTTTAATTTTTTTAATTCCT
TTTTGGGCCAAAATTTAC Coding sequence (CDS) from alignment at scaffold_179:115266..116633- >TCONS_00050540 ID=TCONS_00050540|Name=TCONS_00050540|organism=Clytia hemisphaerica|type=CDS|length=2304bp|location=Sequence derived from alignment at scaffold_179:115266..116633- (Clytia hemisphaerica)
GTGCCTATGACCATATACGGGATACTGGCTTCTTAAAGCTCCCCCATCGG
ACCACGCTCAACCAGTACACCAATTTTACTGATATTGGAACCGGTTATAA
CCCAGACGTCATCAAGCGACTGTATGACGATTACAAACTTGATGATATGC
CTGAAGGCCACAGAATCTGCACTCTTCTTTTTGACGAAATGAAAATTTTT
TAACCAATTCGATGTGACTCGTGTAACCTGTACCGTAAAACCCTTTTAAA
AATATCATCACGACAGAAAAATGTATTATCAAGTGCTGTCAAAAAGACAC
GTCCATTATCATCATGCAACAAGAGACAACTGCGAAAAAGGCTGTTTGAA
AACAAATCTCAAATTAGAGATTTACAAAAACAAAAGAGAAAATTGGAGAA
ACAAGTTGCAAGATCAGTCAAACGAGATGGTATCCAACTTGAGAAAAGCA
CTCACAAATTAGTGTCCAGGATTTCTAAAACTTGTCCATTTCCAAAGGAC
TCAGTTATGTATTTACTTTGGGAGCAACAGCGAAAGGCTTGTAGGTTGTC
CAAAATGAAATCAATGCGTTGGCATCCTATCATCATTCGCTGGTGTCTTG
GAATCTACCTCAAGTCTCCAGAATTTCACCACGGCAATTCGGCCACCTAA
ATTTTTGCATACAATTCAATATGGCGGACGCAAAGGCGAAAAGGTCTATG
CAATCAATATTGATCAATGGACAATAAGGTCCAAGAAATGTGATATGGTG
CTATCTATAAAGTTTCAGGTGCCTATGACCATATACGGGATACTGGCTTC
TTAAAGCTCCCCCATCGGACCACGCTCAACCAGTACACCAATTTTACTGA
TATTGGAACCGGTTATAACCCAGACGTCATCAAGCGACTGTATGACGATT
ACAAACTTGATGATATGCCTGAAGGCCACAGAATCTGCACTCTTCTTTTT
GACGAAATGAAAATTTTTTAACCAATTCGATGTGACTCGTGTAACCTGTA
CCGTAAAACCCTTTTAAAAATATCATCACGACAGAAAAATGTATTATCAA
GTGCTGTCAAAAAGACACGTCCATTATCATCATGCAACAAGAGACAACTG
CGAAAAAGGCTGTTTGAAAACAAATCTCAAATTAGAGATTTACAAAAACA
AAAGAGAAAATTGGAGAAACAAGTTGCAAGATCAGTCAAACGAGATGGTA
TCCAACTTGAGAAAAGCACTCACAAATTAGTGTCCAGGATTTCTAAAACT
TGTCCATTTCCAAAGGACTCAGTTATGTATTTACTTTGGGAGCAACAGCG
AAAGGCTTGTAGGTTGTCCAAAATGAAATCAATGCGTTGGCATCCTATCA
TCATTCGCTGGTGTCTTGGAATCTACCTCAAGTCTCCAGAATTTCACCAC
GGCAATTCGGCCACCTAAATTTTTGCATACAATTCAATATGGCGGACGCA
AAGGCGAAAAGGTCTATGCAATCAATATTGATCAATGGACAATAAGGTCC
AAGAAATGTGATATGGTGCTATCTATAAAGTTTCAGGTGCCTATGACCAT
ATACGGGATACTGGCTTCTTAAAGCTCCCCCATCGGACCACGCTCAACCA
GTACACCAATTTTACTGATATTGGAACCGGTTATAACCCAGACGTCATCA
AGCGACTGTATGACGATTACAAACTTGATGATATGCCTGAAGGCCACAGA
ATCTGCACTCTTCTTTTTGACGAAATGAAAATTTTTTAACCAATTCGATG
TGACTCGTGTAACCTGTACCGTAAAACCCTTTTAAAAATATCATCACGAC
AGAAAAATGTATTATCAAGTGCTGTCAAAAAGACACGTCCATTATCATCA
TGCAACAAGAGACAACTGCGAAAAAGGCTGTTTGAAAACAAATCTCAAAT
TAGAGATTTACAAAAACAAAAGAGAAAATTGGAGAAACAAGTTGCAAGAT
CAGTCAAACGAGATGGTATCCAACTTGAGAAAAGCACTCACAAATTAGTG
TCCAGGATTTCTAAAACTTGTCCATTTCCAAAGGACTCAGTTATGTATTT
ACTTTGGGAGCAACAGCGAAAGGCTTGTAGGTTGTCCAAAATGAAATCAA
TGCGTTGGCATCCTATCATCATTCGCTGGTGTCTTGGAATCTACCTCAAG
TCTCCAGAATTTCACCACGGCAATTCGGCCACCTAAATTTTTGCATACAA
TTCAATATGGCGGACGCAAAGGCGAAAAGGTCTATGCAATCAATATTGAT
CAATGGACAATAAGGTCCAAGAAATGTGATATGGTGCTATCTATAAAGTT
TCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050540-exon-scaffold_179-1575043694:116487..116633 | TCONS_00050540-exon-scaffold_179-1575043694:116487..116633 | Clytia hemisphaerica | exon |
| TCONS_00050540-exon-scaffold_179-1575043694:115728..116145 | TCONS_00050540-exon-scaffold_179-1575043694:115728..116145 | Clytia hemisphaerica | exon |
| TCONS_00050540-exon-scaffold_179-1575043694:115266..115527 | TCONS_00050540-exon-scaffold_179-1575043694:115266..115527 | Clytia hemisphaerica | exon |
| TCONS_00050540-exon-scaffold_179-1510915933:116487..116633 | TCONS_00050540-exon-scaffold_179-1510915933:116487..116633 | Clytia hemisphaerica | exon |
| TCONS_00050540-exon-scaffold_179-1510915933:115728..116145 | TCONS_00050540-exon-scaffold_179-1510915933:115728..116145 | Clytia hemisphaerica | exon |
| TCONS_00050540-exon-scaffold_179-1510915933:115266..115527 | TCONS_00050540-exon-scaffold_179-1510915933:115266..115527 | Clytia hemisphaerica | exon |
| TCONS_00050540-exon-scaffold_179-1491911889:116487..116633 | TCONS_00050540-exon-scaffold_179-1491911889:116487..116633 | Clytia hemisphaerica | exon |
| TCONS_00050540-exon-scaffold_179-1491911889:115728..116145 | TCONS_00050540-exon-scaffold_179-1491911889:115728..116145 | Clytia hemisphaerica | exon |
| TCONS_00050540-exon-scaffold_179-1491911889:115266..115527 | TCONS_00050540-exon-scaffold_179-1491911889:115266..115527 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_179 | supercontig | scaffold_179:115266..116633 - |
Blast
The following BLAST results are available for this feature:
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