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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050450 ID=TCONS_00050450|Name=TCONS_00050450|organism=Clytia hemisphaerica|type=transcript|length=1244bp
GCCAAAACTTTCTTGACAAGGAAATATAAATCAGCATACAGAAGGTTTCA
GTTAACAAAACAACAACTGTGggaaaaaaaacagataaaggTAACACTTT
TTACTGGCAAGGATGTTGGTCAAAAGAACCcaatttgttttcaatttatt
ttgtttgtcgTTTGCTTCGTTTGAGAGACATCAATGTGAAATTTCTCCTG
CGGAAGAAACGGTAATCCAAGGAGAAAATGTAACTTCATCATTACACGAA
GACGAACCTCTCCAAAGACAAAATGTGGGCAACTACTTTCCATCCTTTAA
ACTCAACAATGTAGACTACGCAGGAAAGAAACAGGTCCTGTATGAAAACA
ACATACCGTCTATCCGTAAATGGAAAAATAGGCGACTAAACGGACGAAGA
GGAAAAGGTATGAGGGGCCGGTGGAGAAATCAACACCGCAGAAAAGGACA
CAGAAATCGAAACAAAGGAAAAGGAAGGAAATGGCCTCAAAGACCTAGGA
AATGGCGTGCTCAGAACTGGCGCGAAAGGGCGAGAGGAAAGAAAGGCAGA
AGAAAGTGGAGAGGTGGAaagaatttcaacaaaaattggaaTACAGAGGA
AGGCTCAAAAGATCAGGACAAGGAAATTGAAACAATGGAGGAGGAGCAGG
GAGAAGAAGATGAAGAGGAAGATGACCAAGGGTATGAAGATGAGGAAGAG
GATGAAGAGGATGATGTGGACCAGGAGGATAACGAGGAGGACGGTGAGGG
TCATGATGATAGGGCTGATGTAGAGGATAAGGACCATGATCAAACTAATG
AAAAAAAGGTGAAAGATTGCAAAGATTCTGATGCAAACTGTGGTGGATCA
CATAGTGCAAAACCTTCGCCAAAGGTTGATTGTGAGAACATCGATGGAGG
GATGCTTGGCCCTACTTCTTCAATCATACCAGGATGCAACCAACCTACAC
CAATTCGAAGCACGCGTAGACCGATCACTGTATACCCTAGCAACTGGAGA
ACAAAAAGACCTACAAACAATGTTTGGCCTTATGGTCCTTCAACGACACA
GAAACCAGCCACTACTTTACCAAGGGTATGTCCTTGCGCCACTCCACCCG
CTCAAAGACCACCTTGTCCTACGCTGAACTGTGTTCCATACACCATAGTC
TCTCGTCTTAATGCAATTATACCAAATAAAGATACTTCAAGACAGCAAGA
GAAGGTAGGCAGGTAAGAGAACTCGAGAGCTACAAGCAACAAAT Run BLAST on NCBI protein sequence of TCONS_00050450-protein >TCONS_00050450-protein ID=TCONS_00050450-protein|Name=TCONS_00050450-protein|organism=Clytia hemisphaerica|type=polypeptide|length=367bp
MLVKRTQFVFNLFCLSFASFERHQCEISPAEETVIQGENVTSSLHEDEPL
QRQNVGNYFPSFKLNNVDYAGKKQVLYENNIPSIRKWKNRRLNGRRGKGM
RGRWRNQHRRKGHRNRNKGKGRKWPQRPRKWRAQNWRERARGKKGRRKWR
GGKNFNKNWNTEEGSKDQDKEIETMEEEQGEEDEEEDDQGYEDEEEDEED
DVDQEDNEEDGEGHDDRADVEDKDHDQTNEKKVKDCKDSDANCGGSHSAK
PSPKVDCENIDGGMLGPTSSIIPGCNQPTPIRSTRRPITVYPSNWRTKRP
TNNVWPYGPSTTQKPATTLPRVCPCATPPAQRPPCPTLNCVPYTIVSRLN
AIIPNKDTSRQQEKVGR Run BLAST on NCBI transcript from alignment at scaffold_172:45875..49297+ Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050450 ID=TCONS_00050450|Name=TCONS_00050450|organism=Clytia hemisphaerica|type=transcript|length=3423bp|location=Sequence derived from alignment at scaffold_172:45875..49297+ (Clytia hemisphaerica)
GCCAAAACTTTCTTGACAAGGAAATATAAATCAGCATACAGAAGGTTTCA
GTTAACAAAACAACAACTGTGggaaaaaaaacagataaaggTAACACTTT
TTACTGGCAAGGATGTTGGTCAAAAGAACCcaatttgttttcaatttatt
ttgtttgtcgTTTGCTTCGTTTGAGAGACGTAAGTGTTGCATgtttcccg
ccaaatttaatttatttcacacATTCCTCAAATTCatgctatttcaagcc
ttaaaatagcGTTAAAACAGGTTtcttttgcttatttaataacgcttttg
gccaaaaatatcctacaaccgccaaattaaattcccgccaaaatttcttc
ctttaaggtaattttAACCACATTTGTTCAGNaggtttttttgcttattt
aataacgcttttggccaaaaatatcctacaaccgccaaattaaattcccg
ccaaaatttcttcctttaaggtaattttAACCACATTTGTTCAGACCATG
CAAAAAACAAGAACACATCTATAAAAGCAGGTTTTAGCTCAATTTTTGAT
GGTCACGACTTTTCAAGGGAAAACTTCAGCTTTGGCAAATTTAAACAATT
TTGCTCTAGGTTAGTCtcggtactcttaggttccaaataaacgggccccc
ccNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNgctgtcaaagagaaggccccttattttgctctaaat
agcctgattttagcctatttttaccttatttttgggtttcagaagtacaa
tttccaacccacccggcaattaggtcccccccgtttattaaaatctataa
aattttccaacccccccgtttattcgaacccccccgtttatttggaacct
aagagtaatcgAGCAAAATACTAGCAAATACAAATAGCAGCAAgagtaga
aaaaaaaatctataaacacCCATTATTGGGCATGATTCGAACGAACAGAA
ACACCTCACCATGAGACCCACTCGATAGAAGTCTTTTAATTCTCTATGCC
AGTTTAtgtagaaatgaaaataaaaattctcgaaattcaatttgccacta
ctggcaaaaaacTGGATTTTTCAGtagaaacaagcaacatgctgaatgga
cctacctaatgattaacatcagatgaaaataagaaaaaagtgacaataat
tgtacaaaaattcagaatggaaaaataaagcttgtgtgttgaataatgta
aaatggtaaggaatttccccaaatacgaaaatcacttaaaccattcaggc
ccaaaaaaccttttaagctgtttttggcccaaatttgcccaaaaaaattt
ttcttaaaaatctggctccgtcacattttgggcattgccattttgcatca
ttgtgcaaaaaatcagtaaaaaattatgagtcaacattgagaaaagctat
attttcttatttggttaaagggaatttccccaaaatacgaaaatccgttt
tttaaggcgaataagaattttccgNttcagccattctttagagaatcttg
ccctccatctttgtacaaaaaatcagaaaaaagtaatgacaggattttgc
acaaagtccaaaaaaccctaattttaggtagtttttggcccaaattNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNtaatgagccaatcttgagaaaagctggtaacagacgg
acggacgaacggacatgggttaatttatagaacctccaccggggtacccg
gaggtaggtccaaaaattacgTTTTGAATATCATGAATCGGCAACGACAA
AGTATACTTAAAGCGCTAAACAATCAATCTGATTCTTCTTCAGATCAATG
TGAAATTTCTCCTGCGGAAGAAACGGTAATCCAAGGAGAAAATGTAACTT
CATCATTACACGAAGACGAACCTCTCCAAAGACAAAATGTGGGCAACTAC
TTTCCATCCTTTAAACTCAACAATGTAGACTACGCAGGAAAGAAACAGGT
CCTGTATGAAAACAACATACCGTCTATCCGTAAATGGAAAAATAGGCGAC
TAAACGGACGAAGAGGAAAAGGTATGAGGGGCCGGTGGAGAAATCAACAC
CGCAGAAAAGGACACAGAAATCGAAACAAAGGAAAAGGAAGGAAATGGCC
TCAAAGgtaatttaaaaagaattttcaatggCATGTGTATCTTCTTTGAG
GAAAGTCAGGGGTTTACTAACATTTTTGAAACTTGAAAGTTTTCGGGCTT
TTAGTTTTTTTGCAATCAGGAAAGAAAatgcttgtttttcttttgatatc
tATAACTTTTTTCATCCTTAGACCTAGGAAATGGCGTGCTCAGAACTGGC
GCGAAAGGGCGAGAGGAAAGAAAGGCAGAAGAAAGTGGAGAGGTGGAaag
aatttcaacaaaaattggaaTACAGAGGAAGGCTCAAAAGATCAGGACAA
GGAAATTGAAACAATGGAGGAGGAGCAGGGAGAAGAAGATGAAGAGGAAG
ATGACCAAGGGTATGAAGATGAGGAAGAGGATGAAGAGGATGATGTGGAC
CAGGAGGATAACGAGGAGGACGGTGAGGGTCATGATGATAGGGCTGATGT
AGAGGATAAGGACCATGATCAAACTAATGAAAAAAAGGTGAAAGATTGCA
AAGATTCTGATGCAAACTGTGGTGGATCACATAGTGCAAAACCTTCGCCA
AAGGTTGATTGTGAGAACATCGATGGAGGGATGCTTGGCCCTACTTCTTC
AATCATACCAGGATGCAACCAACCTACACCAATTCGAAGCACGCGTAGAC
CGATCACTGTATACCCTAGCAACTGGAGAACAAAAAGACCTACAAACAAT
GTTTGGCCTTATGGTCCTTCAACGACACAGAAACCAGCCACTACTTTACC
AAGGGTATGTCCTTGCGCCACTCCACCCGCTCAAAGACCACCTTGTCCTA
CGCTGAACTGTGTTCCATACACCATAGTCTCTCGTCTTAATGCAATTATA
CCAAATAAAGATACTTCAAGACAGCAAGAGAAGGTAGGCAGGTAAGAGAA
CTCGAGAGCTACAAGCAACAAAT Coding sequence (CDS) from alignment at scaffold_172:45875..49297+ >TCONS_00050450 ID=TCONS_00050450|Name=TCONS_00050450|organism=Clytia hemisphaerica|type=CDS|length=3312bp|location=Sequence derived from alignment at scaffold_172:45875..49297+ (Clytia hemisphaerica)
ATGTTGGTCAAAAGAACCcaatttgttttcaatttattttgtttgtcgTT
TGCTTCGTTTGAGAGACATCAATGTGAAATTTCTCCTGCGGAAGAAACGG
TAATCCAAGGAGAAAATGTAACTTCATCATTACACGAAGACGAACCTCTC
CAAAGACAAAATGTGGGCAACTACTTTCCATCCTTTAAACTCAACAATGT
AGACTACGCAGGAAAGAAACAGGTCCTGTATGAAAACAACATACCGTCTA
TCCGTAAATGGAAAAATAGGCGACTAAACGGACGAAGAGGAAAAGGTATG
AGGGGCCGGTGGAGAAATCAACACCGCAGAAAAGGACACAGAAATCGAAA
CAAAGGAAAAGGAAGGAAATGGCCTCAAAGACCTAGGAAATGGCGTGCTC
AGAACTGGCGCGAAAGGGCGAGAGGAAAGAAAGGCAGAAGAAAGTGGAGA
GGTGGAaagaatttcaacaaaaattggaaTACAGAGGAAGGCTCAAAAGA
TCAGGACAAGGAAATTGAAACAATGGAGGAGGAGCAGGGAGAAGAAGATG
AAGAGGAAGATGACCAAGGGTATGAAGATGAGGAAGAGGATGAAGAGGAT
GATGTGGACCAGGAGGATAACGAGGAGGACGGTGAGGGTCATGATGATAG
GGCTGATGTAGAGGATAAGGACCATGATCAAACTAATGAAAAAAAGGTGA
AAGATTGCAAAGATTCTGATGCAAACTGTGGTGGATCACATAGTGCAAAA
CCTTCGCCAAAGGTTGATTGTGAGAACATCGATGGAGGGATGCTTGGCCC
TACTTCTTCAATCATACCAGGATGCAACCAACCTACACCAATTCGAAGCA
CGCGTAGACCGATCACTGTATACCCTAGCAACTGGAGAACAAAAAGACCT
ACAAACAATGTTTGGCCTTATGGTCCTTCAACGACACAGAAACCAGCCAC
TACTTTACCAAGGGTATGTCCTTGCGCCACTCCACCCGCTCAAAGACCAC
CTTGTCCTACGCTGAACTGTGTTCCATACACCATAGTCTCTCGTCTTAAT
GCAATTATACCAAATAAAGATACTTCAAGACAGCAAGAGAAGGTAGGCAG
GTAAATGTTGGTCAAAAGAACCcaatttgttttcaatttattttgtttgt
cgTTTGCTTCGTTTGAGAGACATCAATGTGAAATTTCTCCTGCGGAAGAA
ACGGTAATCCAAGGAGAAAATGTAACTTCATCATTACACGAAGACGAACC
TCTCCAAAGACAAAATGTGGGCAACTACTTTCCATCCTTTAAACTCAACA
ATGTAGACTACGCAGGAAAGAAACAGGTCCTGTATGAAAACAACATACCG
TCTATCCGTAAATGGAAAAATAGGCGACTAAACGGACGAAGAGGAAAAGG
TATGAGGGGCCGGTGGAGAAATCAACACCGCAGAAAAGGACACAGAAATC
GAAACAAAGGAAAAGGAAGGAAATGGCCTCAAAGACCTAGGAAATGGCGT
GCTCAGAACTGGCGCGAAAGGGCGAGAGGAAAGAAAGGCAGAAGAAAGTG
GAGAGGTGGAaagaatttcaacaaaaattggaaTACAGAGGAAGGCTCAA
AAGATCAGGACAAGGAAATTGAAACAATGGAGGAGGAGCAGGGAGAAGAA
GATGAAGAGGAAGATGACCAAGGGTATGAAGATGAGGAAGAGGATGAAGA
GGATGATGTGGACCAGGAGGATAACGAGGAGGACGGTGAGGGTCATGATG
ATAGGGCTGATGTAGAGGATAAGGACCATGATCAAACTAATGAAAAAAAG
GTGAAAGATTGCAAAGATTCTGATGCAAACTGTGGTGGATCACATAGTGC
AAAACCTTCGCCAAAGGTTGATTGTGAGAACATCGATGGAGGGATGCTTG
GCCCTACTTCTTCAATCATACCAGGATGCAACCAACCTACACCAATTCGA
AGCACGCGTAGACCGATCACTGTATACCCTAGCAACTGGAGAACAAAAAG
ACCTACAAACAATGTTTGGCCTTATGGTCCTTCAACGACACAGAAACCAG
CCACTACTTTACCAAGGGTATGTCCTTGCGCCACTCCACCCGCTCAAAGA
CCACCTTGTCCTACGCTGAACTGTGTTCCATACACCATAGTCTCTCGTCT
TAATGCAATTATACCAAATAAAGATACTTCAAGACAGCAAGAGAAGGTAG
GCAGGTAAATGTTGGTCAAAAGAACCcaatttgttttcaatttattttgt
ttgtcgTTTGCTTCGTTTGAGAGACATCAATGTGAAATTTCTCCTGCGGA
AGAAACGGTAATCCAAGGAGAAAATGTAACTTCATCATTACACGAAGACG
AACCTCTCCAAAGACAAAATGTGGGCAACTACTTTCCATCCTTTAAACTC
AACAATGTAGACTACGCAGGAAAGAAACAGGTCCTGTATGAAAACAACAT
ACCGTCTATCCGTAAATGGAAAAATAGGCGACTAAACGGACGAAGAGGAA
AAGGTATGAGGGGCCGGTGGAGAAATCAACACCGCAGAAAAGGACACAGA
AATCGAAACAAAGGAAAAGGAAGGAAATGGCCTCAAAGACCTAGGAAATG
GCGTGCTCAGAACTGGCGCGAAAGGGCGAGAGGAAAGAAAGGCAGAAGAA
AGTGGAGAGGTGGAaagaatttcaacaaaaattggaaTACAGAGGAAGGC
TCAAAAGATCAGGACAAGGAAATTGAAACAATGGAGGAGGAGCAGGGAGA
AGAAGATGAAGAGGAAGATGACCAAGGGTATGAAGATGAGGAAGAGGATG
AAGAGGATGATGTGGACCAGGAGGATAACGAGGAGGACGGTGAGGGTCAT
GATGATAGGGCTGATGTAGAGGATAAGGACCATGATCAAACTAATGAAAA
AAAGGTGAAAGATTGCAAAGATTCTGATGCAAACTGTGGTGGATCACATA
GTGCAAAACCTTCGCCAAAGGTTGATTGTGAGAACATCGATGGAGGGATG
CTTGGCCCTACTTCTTCAATCATACCAGGATGCAACCAACCTACACCAAT
TCGAAGCACGCGTAGACCGATCACTGTATACCCTAGCAACTGGAGAACAA
AAAGACCTACAAACAATGTTTGGCCTTATGGTCCTTCAACGACACAGAAA
CCAGCCACTACTTTACCAAGGGTATGTCCTTGCGCCACTCCACCCGCTCA
AAGACCACCTTGTCCTACGCTGAACTGTGTTCCATACACCATAGTCTCTC
GTCTTAATGCAATTATACCAAATAAAGATACTTCAAGACAGCAAGAGAAG
GTAGGCAGGTAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050450-exon-scaffold_172-1491911889:45875..46053 | TCONS_00050450-exon-scaffold_172-1491911889:45875..46053 | Clytia hemisphaerica | exon |
| TCONS_00050450-exon-scaffold_172-1510915933:45875..46053 | TCONS_00050450-exon-scaffold_172-1510915933:45875..46053 | Clytia hemisphaerica | exon |
| TCONS_00050450-exon-scaffold_172-1575043694:45875..46053 | TCONS_00050450-exon-scaffold_172-1575043694:45875..46053 | Clytia hemisphaerica | exon |
| TCONS_00050450-exon-scaffold_172-1491911889:48068..48380 | TCONS_00050450-exon-scaffold_172-1491911889:48068..48380 | Clytia hemisphaerica | exon |
| TCONS_00050450-exon-scaffold_172-1510915933:48068..48380 | TCONS_00050450-exon-scaffold_172-1510915933:48068..48380 | Clytia hemisphaerica | exon |
| TCONS_00050450-exon-scaffold_172-1575043694:48068..48380 | TCONS_00050450-exon-scaffold_172-1575043694:48068..48380 | Clytia hemisphaerica | exon |
| TCONS_00050450-exon-scaffold_172-1491911889:48546..49297 | TCONS_00050450-exon-scaffold_172-1491911889:48546..49297 | Clytia hemisphaerica | exon |
| TCONS_00050450-exon-scaffold_172-1510915933:48546..49297 | TCONS_00050450-exon-scaffold_172-1510915933:48546..49297 | Clytia hemisphaerica | exon |
| TCONS_00050450-exon-scaffold_172-1575043694:48546..49297 | TCONS_00050450-exon-scaffold_172-1575043694:48546..49297 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_172 | supercontig | scaffold_172:45875..49297 + |
Blast
The following BLAST results are available for this feature:
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