TCONS_00050442 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050442
Unique NameTCONS_00050442
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length828

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050442 ID=TCONS_00050442|Name=TCONS_00050442|organism=Clytia hemisphaerica|type=transcript|length=828bp
GTTAATGATTGTTTAATCTTCCGTGGTGAATATGAATCTTGGCAAGAATG
CATCACATGCAAAGAGAAGCGCAAAGACTCTGACCCAGCACCAAAAAGCA
ATCTGCCAAAATGAAGAATGGAAGAAATACTATATCAAAACTGGTGCAAA
TTATTCTAATGGTTGGAGAAAGGTAGATCTAACTTTTGCGGAAATGTATC
AAGTTCAATCATCAGTAGTTGTCATGGAAAACATGGCAAACCAAATGTGA
AATAAGAAAAACTTTACAGTCAACTTTATTTCCATTGTCACCTAGTGAAA
AATAGCTGAAAGGCTTTATGGAGtttaattactttttatcaTTGGTCCGT
CCGTCAGATTGACGGTGGAAACAAGCTTATAGACATCCTGCATGGCTTGT
GGCCAATAGTGTATTATCTTTACTTTAAAGGATTGTAAGGCTTCAATGTT
GACGGGACAAAACGTGTAAAAAACCTGTAAAAAACTTCCTTGTATATAAA
CAGTAAGAGTGAACAGAGAGAAATCAGAAGCATCACAAGAAACTACGATT
ATGTTTTTAGGTGTCTGATATCACTGGTGTCTCCTTCTTGTCTGACTCAA
TCTTTACAAGGCTCGAAATGCATTGCGAAACACCGATTGAGTGGGCTTCT
TACAGTGCAACAAGAGAAGATTTGTGTTGCTACTGTAATAAACCCAAATG
TTGCTGGTTAAAGCTAAACACTTTATTGTTCAAAATATGATGTCAAAACG
TAAACAAATACTCTCAGCTCTTCCTACaagtctttttgatgaaatCGAGG
TAGAAATATTGCGAGTAGAGCCAAACAC
Run BLAST on NCBI

transcript from alignment at scaffold_171:164997..165824

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050442 ID=TCONS_00050442|Name=TCONS_00050442|organism=Clytia hemisphaerica|type=transcript|length=828bp|location=Sequence derived from alignment at scaffold_171:164997..165824 (Clytia hemisphaerica)
GTGTTTGGCTCTACTCGCAATATTTCTACCTCGatttcatcaaaaagact
tGTAGGAAGAGCTGAGAGTATTTGTTTACGTTTTGACATCATATTTTGAA
CAATAAAGTGTTTAGCTTTAACCAGCAACATTTGGGTTTATTACAGTAGC
AACACAAATCTTCTCTTGTTGCACTGTAAGAAGCCCACTCAATCGGTGTT
TCGCAATGCATTTCGAGCCTTGTAAAGATTGAGTCAGACAAGAAGGAGAC
ACCAGTGATATCAGACACCTAAAAACATAATCGTAGTTTCTTGTGATGCT
TCTGATTTCTCTCTGTTCACTCTTACTGTTTATATACAAGGAAGTTTTTT
ACAGGTTTTTTACACGTTTTGTCCCGTCAACATTGAAGCCTTACAATCCT
TTAAAGTAAAGATAATACACTATTGGCCACAAGCCATGCAGGATGTCTAT
AAGCTTGTTTCCACCGTCAATCTGACGGACGGACCAAtgataaaaagtaa
ttaaaCTCCATAAAGCCTTTCAGCTATTTTTCACTAGGTGACAATGGAAA
TAAAGTTGACTGTAAAGTTTTTCTTATTTCACATTTGGTTTGCCATGTTT
TCCATGACAACTACTGATGATTGAACTTGATACATTTCCGCAAAAGTTAG
ATCTACCTTTCTCCAACCATTAGAATAATTTGCACCAGTTTTGATATAGT
ATTTCTTCCATTCTTCATTTTGGCAGATTGCTTTTTGGTGCTGGGTCAGA
GTCTTTGCGCTTCTCTTTGCATGTGATGCATTCTTGCCAAGATTCATATT
CACCACGGAAGATTAAACAATCATTAAC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031944XLOC_031944Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050442-exon-scaffold_171-1491911889:164997..165824TCONS_00050442-exon-scaffold_171-1491911889:164997..165824Clytia hemisphaericaexon
TCONS_00050442-exon-scaffold_171-1510915933:164997..165824TCONS_00050442-exon-scaffold_171-1510915933:164997..165824Clytia hemisphaericaexon
TCONS_00050442-exon-scaffold_171-1575043694:164997..165824TCONS_00050442-exon-scaffold_171-1575043694:164997..165824Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_171supercontigscaffold_171:164997..165824 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0.167672	0.0648945	0.380935	1.23667	0.366463	0.73687	1.10376	0.338085	0.239299	0.406472	0.763424	0.304945	0.356275	0.0650903	0.104778	0.0430259	0.0441001	0.18278	0.127511	0.11083	0.0810885	0.0657158	0.11949	1.96916	2.36154	0	0.251619	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050442 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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