TCONS_00050378 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050378
Unique NameTCONS_00050378
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1617

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050378 ID=TCONS_00050378|Name=TCONS_00050378|organism=Clytia hemisphaerica|type=transcript|length=1617bp
aaaaaattgtgagtgttcgatataggttcgattaatttttttaattgaat
tttaatCGTTTGACTGGGTTCGCTTAGTTTGaattgtttgattggttcga
caagttcgattgatcggatCTCTGGCATGTtatatgacagaaagtatgat
tgataaacttggtggagttatcaaaacaaatttgttgtcaaagagattta
aagtaagtgaaaatacaggtcAGATATACAACAAGTCCCATGGTCAAGTT
ATTCAAAGCCTTTCAAAGCCTGTCGCACGCGTTCGTTCGCCAAAACGACA
ATTGCTATTGGGTTGCAAAATCTCACAGACTCTAGACTAGACACAAAATA
GCAAAGCAGAAGATTATGAATACAATAAGAACAGATCATACTCACTTATA
CTTTAAGGTGAATAGTAGAAATGTGTCAATCACGAGGTTCAACTTATATA
CCTGCTtgaccttttttgaaatttgagtaGGCTCCATCCAGCtaaacttt
cactttcgttttcggaagTTACTAGACTGCGCTTCTTTTGTAGCGCCTGC
TCCACGATAGAGGCTAAATCTAACGTCACCATAGTAACGTTTGATAATGG
CagagaacaaaaacaaaaaaagtcgGCCATTTGTTCTTCTCAAATTACAG
CGCGAGGACATATCTCGAGTGCGCAGGGGCCTTTTTGggtttttctaact
tttatgggattttaatttcttttgtaaaagtaGGTAGAATGCATCGTGCT
TACCAATCGATAACTCCTGCCAACAATAAACTTTTAAAGCAGAGATGGGA
TATGACAAGATATGATACACATCGGAAAAAGGTTCGTCAGGCAAGCGCAG
TGATCGATAACCATGCCCCCTGTACATATTTGCATCTACActtgaaactt
aaaaaaatgCAGATTGAGGGAGAAAACTTAGCAACTGTGGAAAGAGACAA
TCGAATTTTATTGGAGAAAATGTCACATATCATGAGAACCAAAGGGCGTG
TAGATAATCGCAACTACTACGAACACAAAAGTTTGAATAAAACCAAACGT
CAGCGTGAACTTCTTCGAGTAACACACGAAAATCAGGCTATATTGAAAAG
AATAACATCGAAAGAACCACATTTGAACCATTTACATTGGGAGGAAGAAT
GGAAAGCTAACCAACGATACATGGATAATATCGCAAAATATCCCAAGGAT
TGGTATGAAGCTATCGTTCGAAAGACCAAACCCAAGAAGAAGAGCACCTC
AATGCAAGACAAAGATGATAAATCAGATGAAGAGAATGACAACAATGAAC
ATCTACCCTCTATCAACAATTAAAGCCACTTTTTTCTTAACAAATGaaca
attcttttttctaatattttgataaattttgttatctttttgtttttaat
gaagtaattttatattaatattttatttaacaaaataaatagATTTAGTT
ATATGTAAATTGTTTTGACTATACAATAAATGAAAATGGTTTGactaaaa
atctataaaaatttAATATAAAATTGAGTATAAAATGGTATGAAAATaag
tatataaaaataaagatgttgaaatcaaccctttgagtgccaatgtcgta
tatatcagacatgggct
Run BLAST on NCBI

transcript from alignment at scaffold_17:84345..87473+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050378 ID=TCONS_00050378|Name=TCONS_00050378|organism=Clytia hemisphaerica|type=transcript|length=3129bp|location=Sequence derived from alignment at scaffold_17:84345..87473+ (Clytia hemisphaerica)
aaaaaattgtgagtgttcgatataggttcgattaatttttttaattgaat
tttaatCGTTTGACTGGGTTCGCTTAGTTTGaattgtttgattggttcga
caagttcgattgatcggatCTCTGGCATGTtatatgacagaaagtatgat
tgataaacttggtggagttatcaaaacaaatttgttgtcaaagagattta
aagtaagtgaaaatacaggtcAGATATACAACAAGTCCCATGGTCAAGTT
ATTCAAAGCCTTTCAAAGCCTGTCGCACGCGTTCGTTCGCCAAAACGACA
ATTGCTATTGGGTTGCAAAATCTCACAGACTCTAGACTAGACACAAAATA
GCAAAGCAGAAGATTATGAATACAATAAGAACAGATCATACTCACTTATA
CTTTAAGGTGAATAGTAGAAATGTGTCAATCACGAGGTTCAACTTATATA
CCTGCTtgaccttttttgaaatttgagtaGGCTCCATCCAGCtaaacttt
cactttcgttttcggaagTTACTAGACTGCGCTTCTTTTGTAGCGCCTGC
TCCACGATAGAGGCTAAATCTAACGTCACCATAGTAACGTTTGATAATGG
CagagaacaaaaacaaaaaaagtcgGCCATTTGTTCTTCTCAAATTACAG
CGCGAGGACATATCTCGAGTGCGCAGGGGCCTTTTTGggtttttctaact
tttatgggattttaatttcttttgtaaaagtaGGTAGAATGCATCGTGCT
TACCAATCGATAACTCCTGCCAACAATAAACTTTTAAAGCAGAGATGGGA
TATGACAAGATATGATACACATCGGAAAAAGGTAAGACGTTGGCATgtgt
tttcttttcaacttttgatatttctttAAGCATCACCAGTGCTTAAAAAT
GTAAAACGCAATAGGTTTTCTGCTGAAGTTTATTAATCGTTATTTTTGTT
GCTCCGTAACGCTTCAGAGGGCTagaattttcgcgaaaaagacTAAAATT
TTCGAATACCTTATTAACTTCAGCGAATAAAATAATGGTTAATTGCTTTC
TTCATTTTCAGGTTCGTCAGGCAAGCGCAGTGATCGATAACCATGCCCCC
TGTACATATTTGCATCTACActtgaaacttaaaaaaatgCAGGTAACTTA
CGTTTAAACCTTTATCATAATTTAGATGAGCAGTACTCCGTTTGGATTAT
TACAGTATGTTTTATAGACTGGACTTTTTTGGAAATCATCTTTATACTCT
TATGGAGGGGCCTTAGTATAGTTATTGATACTGTGTATATGCAACAAATT
GCCGTTCGAATTCTAGATTGAGGGAGAAAACTTAGCAACTGTGGAAAGAG
ACAATCGAATTTTATTGGAGAAAATGTCACATATCATGAGAACCAAAGGG
CGTGTAGATAATCGCAACTACTACGAACACAAAAGTTTGAATAAAACCAA
ACGTCAGCGTGAACTTCTTCGAGTAACACACGAAAATCAGGTAGCGTTAG
AAGCCTTTTATCTTCAAAAGTCTAACTAgctgttgtttttctctttttga
ttAACAGGATTAACTGATTTTTTTGAGTAAAATTATTATCACTAATGTTA
CAATTTATACGAAGGgccattttcttttgaaaatgaacagaattttttta
aaaacgttttgaaTGAAACATTTTCTCCTTTTCTGTTACAGGCTATATTG
AAAAGAATAACATCGAAAGAACCACATTTGAACCATTTACATTGGGTAAG
TAACTGTTATCGTCTAAAAAGTAATGAGGATCAACTAACGCGTCTCGATT
ATTTCGAAATGCATGTAAGAGATATGTGATGATTGGATAAAATTTTAAAT
GGATTTCTCACGTCTCGCGTTTCATTTATTTTGGTTTATGTGAAATAGAT
GCTCACAAACAGAACAAGATTTGAGCGTCTGTTACATTCatcaattcaaa
aataattaattttctttctcCCGATGGAACTGATCCAATTAGATTAGATT
GTCGAGGACATGCTTATTTAAATAGGCTGCCCTTAAATTGCCCtgtgatt
gaaaaaaaactcaCAATGAAATTACAGCTGATCTCCGTAATTTAAAATGA
TTCCTGATTTTAACTCTGTTGGGGCAGAGACAATGAACGGAAATATTTTC
GCGATTCGCGGAAATTTAGTTACCGTGAAGTTGTATATACACTCAAGGTA
CCTTTAAAAGTTTTCTCATGAAAAAGGCTGCTACTTTAGGCgtggtcgaa
aaatcgcgaatttgaggaaaaaatgtttttcgcgagcataaactttcgcg
aatcgttggataaaaataagaatttgtATGAAAATTTCCTTAAAAGTGAA
TATTATTCGATAAGTCCGATAAAAACGGTTGCTCCTCAATTTCAAAAAGG
CATTAAATATGCCGAAAATTTAATATTAATTACGATATTTATTATTGATT
TCCaactttttgagaatttttcacGATAAACTTTCGTGGAttgccctgtt
aagaattttcaaagacatttactttcgcgaaaaaggtcaaaattcgcgaa
aatcgcgaaagttggtacgcctaaagtaagcctcaaataaaaatagattt
tggaAATTGTTGGATTTTctggataaaaaaaattcaagttttaTGAATTT
AGGAGGAAGAATGGAAAGCTAACCAACGATACATGGATAATATCGCAAAA
TATCCCAAGGATTGGTATGAAGCTATCGTTCGAAAGACCAAACCCAAGAA
GAAGAGCACCTCAATGCAAGACAAAGATGATAAATCAGATGAAGAGAATG
ACAACAATGAACATCTACCCTCTATCAACAATTAAAGCCACTTTTTTCTT
AACAAATGaacaattcttttttctaatattttgataaattttgttatctt
tttgtttttaatgaagtaattttatattaatattttatttaacaaaataa
atagATTTAGTTATATGTAAATTGTTTTGACTATACAATAAATGAAAATG
GTTTGactaaaaatctataaaaatttAATATAAAATTGAGTATAAAATGG
TATGAAAATaagtatataaaaataaagatgttgaaatcaaccctttgagt
gccaatgtcgtatatatcagacatgggct
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031901XLOC_031901Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050378-exon-scaffold_17-1491911889:84345..85175TCONS_00050378-exon-scaffold_17-1491911889:84345..85175Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1510915933:84345..85175TCONS_00050378-exon-scaffold_17-1510915933:84345..85175Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1575043694:84345..85175TCONS_00050378-exon-scaffold_17-1575043694:84345..85175Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1491911889:85406..85486TCONS_00050378-exon-scaffold_17-1491911889:85406..85486Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1510915933:85406..85486TCONS_00050378-exon-scaffold_17-1510915933:85406..85486Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1575043694:85406..85486TCONS_00050378-exon-scaffold_17-1575043694:85406..85486Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1491911889:85661..85834TCONS_00050378-exon-scaffold_17-1491911889:85661..85834Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1510915933:85661..85834TCONS_00050378-exon-scaffold_17-1510915933:85661..85834Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1575043694:85661..85834TCONS_00050378-exon-scaffold_17-1575043694:85661..85834Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1491911889:86036..86089TCONS_00050378-exon-scaffold_17-1491911889:86036..86089Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1510915933:86036..86089TCONS_00050378-exon-scaffold_17-1510915933:86036..86089Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1575043694:86036..86089TCONS_00050378-exon-scaffold_17-1575043694:86036..86089Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1491911889:86997..87473TCONS_00050378-exon-scaffold_17-1491911889:86997..87473Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1510915933:86997..87473TCONS_00050378-exon-scaffold_17-1510915933:86997..87473Clytia hemisphaericaexon
TCONS_00050378-exon-scaffold_17-1575043694:86997..87473TCONS_00050378-exon-scaffold_17-1575043694:86997..87473Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_17supercontigscaffold_17:84345..87473 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.3912	1.81071	2.61875	2.75868	820.788	621.609	415.061	435.806	237.784	211.14	127.036	209.172	1.14903	1.25488	1.07095	1.07989	6.11163	3.94811	2.40041	2.27099	8.52101	8.21062	9.58296	13.3167	67.6691	40.2131	117.642	140.859	5.71678	2.68422
Blast
[Close]
BLAST of TCONS_00050378 vs. Swiss-Prot (Human)
Match: CQ105 (Uncharacterized protein C17orf105 OS=Homo sapiens GN=C17orf105 PE=2 SV=1)

HSP 1 Score: 90.5077 bits (223), Expect = 8.934e-21
Identity = 46/136 (33.82%), Postives = 81/136 (59.56%), Query Frame = 1 
Query:  784 LKQRWDMTRYDTHRKKVRQASAVIDNHAPCTYLHLHLKLKKMQIEGENLATVERDNRILLEKMSHIMRTKGRVDNRNYYEHKSLNKTKRQRELLRVTHENQAILKRITSKEPHLNHLHWEEEWKANQRYMDNIAKY 1191
             +++ D   Y +H+ +++ A   +D   P  + +  LKL K+Q E + +  +E +N+ L +K+++  R   +VD  N Y  KSLN+  R REL+R+T ENQ ILKR+  ++PH +    E +W+ ++RY+ N  +Y
Sbjct:   23 FRKKLDFGHYVSHKNRIQIAKPTVDTKPPVAHTNHILKLSKLQGEQKKINKIEYENKQLCQKIANAHRGPAKVDCWNEYFSKSLNRETRNRELVRITMENQGILKRLVDRKPHYDRRASEIDWQNSRRYIRNTTRY 158
The following BLAST results are available for this feature:
BLAST of TCONS_00050378 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
CQ1058.934e-2133.82Uncharacterized protein C17orf105 OS=Homo sapiens ... [more]
back to top