TCONS_00050124 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050124
Unique NameTCONS_00050124
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length903

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050124 ID=TCONS_00050124|Name=TCONS_00050124|organism=Clytia hemisphaerica|type=transcript|length=903bp
aatcacttcaatttacttttaccgaaattttcctccgatttttggttttt
gattGGATAAAGTCTATTTAAGGCCGGATACATCNCAAATCTATATCAAT
GGCAAGTTTTACACCACAAGAAATGGAATTTCTACAATCACATGGCAATG
AGgtttgtcgGAGTACATGGCTTGCATTATGGGAGTCAAGTGCCGCACCT
GAACCAGATTCTCGTGaagaacaaaaagtgaaagATTTCCTTGGGAAAAA
ATATGAAAGGAAAATGTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAG
CAGCAGAACCTGAAGCAAAACCGTTGAAAACATTGTTGGGTGAAAATTCC
CCTCAAGTTATTGTAGGCTCTAAACAAGAACAAAAGTCTGCATCTATAAA
ATTACCACAATCTGCTGCACCTACCCCTCAACAACCTGTGTTACACCAAC
CTGAGAAGAAATCTAATTTCGACCTCCTTGGTGACCTGAGTGGTGACCCT
TTTGCTTCATCTGCTCCACAACCCACAGCAAGTAACTCAGCAGATGCTTT
TGGAGTGTTTGCACAGCCACCANTGTTGAATATTTTCAGACTCTGCAGAT
GCTTTTGGAGTGTTTGCACAGCCACCACCAGCTCAAAACCAACAAGCACA
ACAAGCGCCACTTTTTGATGCTTTCGGTACCTCttctacagctgcaccaa
caacAAGTCAACCGACAGCAAACgcttcttttgatttctttgctTCTTCC
GCTGGACCAGTATCGACAGCTTCCTCTTCTGCTACTGATTTCTTTGCCAT
GTCTTCGAATACAAGTCAACAACCAGCAGCATCCTCGTCTGCATTTGGAG
TGACTTCTGATGCAGgTCTTTCAGTTGGAAACAACAGCGGTGGAGATAAA
TAT
Run BLAST on NCBI

transcript from alignment at scaffold_167:1667648..1669325-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050124 ID=TCONS_00050124|Name=TCONS_00050124|organism=Clytia hemisphaerica|type=transcript|length=1678bp|location=Sequence derived from alignment at scaffold_167:1667648..1669325- (Clytia hemisphaerica)
AATCACTTCAATTTACTTTTACCGAAATTTTCCTCCGATTTTTGGTTTTT
GATTGGATAAAGTCTATTTAAGGCCGGATACATCNCAAATCTATATCAAT
GGCAAGTTTTACACCACAAGAAATGGAATTTCTACAATCACATGGCAATG
AGGTTTTACTAATTTTGTCTTTATTTTTCTAAACTTTTTTAAATCGTTTT
TCTTTGAATTGATGTCCCTATTTGCAACAAACCAAAATGATAAGAACTAT
TGATTTTTTAATTGTGATTTGACAAATTTGATTTTTTATACAGCATTGCA
TCCTGATTAGTGTTTTCAATATTTTCTCTCTTCCATGTTCATTCAAGGTT
TGTCGGAGTACATGGCTTGCATTATGGGAGTCAAGTGCCGCACCTGAACC
AGATTCTCGTGAAGAACAAAAAGTGAAAGATTTCCTTGGGAAAAAATATG
AAAGGAAAATGTGGTACAGCAGTAAACCAAAGGCAAAAGCACAAGCAGCA
GAACCTGAAGCAAAACCGTTGAAAACATTGTTGGGTGAAAATTCCCCTCA
AGTTATTGTAGGCTCTAAACAAGAACAAAAGTCTGTAAGTAAAACAATTG
AGTTTTGAGCTGAGTTGTTGTTTTTAAAAATTCTGAGTATAAAATTCCAT
AAAGTTTAATTCAGCATGAAAAGTTATCCACAATAATAATAAAGTGATTA
TTTCATAATAATGAAATTAATTATCAAATATCATCTATACCAATACTGAA
ATATTCCAGCATTCAATCATTTCTACTTATAGGCATCTATAAAATTACCA
CAATCTGCTGCACCTACCCCTCAACAACCTGTGTTACACCAACCTGAGAA
GAAATCTAATTTCGACCTCCTTGGTGACCTGAGTGGTGACCCTTTTGCTT
CATCTGCTCCACAACCCACAGCAAGTAGTACGTAATGAAATTCCTTTTTA
GAAACCTGTAAACTTTGGTTCTTTAAATGCATTAATTTTGATTCTTTCAT
ATTTTGTGGAGTCTTATCCATTGATTTAAATTGTTTGAAGAAAATCAAAA
GTCTAAATTTTCAATTTATCAATAAAAACCAACAAATAAAATGTTGAATA
TTTTCAGACTCAGCAGATGCTTTTGGAGTGTTTGCACAGCCACCANTGTT
GAATATTTTCAGACTCTGCAGATGCTTTTGGAGTGTTTGCACAGCCACCA
CCAGCTCAAAACCAACAAGCACAACAAGCGCCACTTTTTGATGCTTTCGG
TACCTCTTCTACAGCTGCACCAACAACAAGTCAACCGACAGCAAACGCTT
CTTTTGATTTCTTTGCTTCTTCCGCTGGACCAGTATCGACAGCTTCCTCT
TCTGCTACTGATTTCTTTGCCATGTCTTCGAATACAAGTCAACAACCAGC
AGCATCCTCGTCTGCATTTGGAGTGACTTCTGATGCAGGTAATCTCATCG
AATGCCAGTAGTCTTTGAAATGGTAACAATGAACAATTTTGAAAATAATT
GATTACAATCTCGTGCTCAATTAATTGTTTATAGCAGAAGTTCCCCTGCA
CAAGTGCACATATTGTTTTAGACCCCCTAAAAGATACATTATCTTTCTTG
ATAATAATAAGGATACTACTATTTTATTTTATTTTGTAAGGTCTTTCAGT
TGGAAACAACAGCGGTGGAGATAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031731XLOC_031731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050124-exon-scaffold_167-1575043694:1669174..1669325TCONS_00050124-exon-scaffold_167-1575043694:1669174..1669325Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1575043694:1668742..1668978TCONS_00050124-exon-scaffold_167-1575043694:1668742..1668978Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1575043694:1668399..1668543TCONS_00050124-exon-scaffold_167-1575043694:1668399..1668543Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1575043694:1667888..1668218TCONS_00050124-exon-scaffold_167-1575043694:1667888..1668218Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1575043694:1667648..1667685TCONS_00050124-exon-scaffold_167-1575043694:1667648..1667685Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1510915933:1669174..1669325TCONS_00050124-exon-scaffold_167-1510915933:1669174..1669325Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1510915933:1668742..1668978TCONS_00050124-exon-scaffold_167-1510915933:1668742..1668978Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1510915933:1668399..1668543TCONS_00050124-exon-scaffold_167-1510915933:1668399..1668543Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1510915933:1667888..1668218TCONS_00050124-exon-scaffold_167-1510915933:1667888..1668218Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1510915933:1667648..1667685TCONS_00050124-exon-scaffold_167-1510915933:1667648..1667685Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1491911889:1669174..1669325TCONS_00050124-exon-scaffold_167-1491911889:1669174..1669325Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1491911889:1668742..1668978TCONS_00050124-exon-scaffold_167-1491911889:1668742..1668978Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1491911889:1668399..1668543TCONS_00050124-exon-scaffold_167-1491911889:1668399..1668543Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1491911889:1667888..1668218TCONS_00050124-exon-scaffold_167-1491911889:1667888..1668218Clytia hemisphaericaexon
TCONS_00050124-exon-scaffold_167-1491911889:1667648..1667685TCONS_00050124-exon-scaffold_167-1491911889:1667648..1667685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1667648..1669325 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.4294	12.4237	48.2231	49.8249	8.52581	5.93759	9.2641	12.4182	3.71429	2.34743	5.64497	3.37164	0.349823	4.11318	4.91616	8.48529	17.4194	14.6771	7.43584	8.73654	11.1752	11.5545	6.74204	14.4604	4.79941	8.97959	9.97104	9.29705	10.0175	15.1624
Blast
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BLAST of TCONS_00050124 vs. Swiss-Prot (Human)
Match: AGFG2 (Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2)

HSP 1 Score: 101.293 bits (251), Expect = 5.244e-24
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 3 
Query:   87 KSISMASFTPQEMEFLQSHGNEVCRSTWLALWESSAAPEPDSREEQKVKDFLGKKYERKMWY------------SSXXXXXXXXXXXXXXXXXTLLGENSPQVIVGSKQEQKSASIKLPQSAAPTPQQPVLHQPEKKSNFDLLGDLSGDPFASSAPQ 521
            KSISM +FT  E+ FLQS GNEVCR  WL L+++  +  PDSR+ QKVK+FL +KYE+K WY                    Q + PE KPL+TLLG+ +P + V +    +  S    +++     QP  H   KK++ DLL D+ GDPFA  APQ
Sbjct:   84 KSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSSQPVSQSHARTSQARSTQPPPHSSVKKASTDLLADIGGDPFA--APQ 238
The following BLAST results are available for this feature:
BLAST of TCONS_00050124 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGFG25.244e-2442.68Arf-GAP domain and FG repeat-containing protein 2 ... [more]
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