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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050123 ID=TCONS_00050123|Name=TCONS_00050123|organism=Clytia hemisphaerica|type=transcript|length=765bp CNCAAATCTATATCAATGGCAAGTTTTACACCACAAGAAATGGAATTTCT ACAATCACATGGCAATGAGgtttgtcgGAGTACATGGCTTGCATTATGGG AGTCAAGTGCCGCACCTGAACCAGATTCTCGTGaagaacaaaaagtgaaa gATTTCCTTGGGAAAAAATATGAAAGGAAAATGTGGTACAGCAGTAAACC AAAGGCAAAAGCACAAGCAGCAGAACCTGAAGCAAAACCGTTGAAAACAT TGTTGGGTGAAAATTCCCCTCAAGTTATTGTAGGCTCTAAACAAGAACAA AAGTCTGCATCTATAAAATTACCACAATCTGCTGCACCTACCCCTCAACA ACCTGTGTTACACCAACCTGAGAAGAAATCTAATTTCGACCTCCTTGGTG ACCTGAGTGGTGACCCTTTTGCTTCATCTGCTCCACAACCCACAGCAAGT AACTCTGCAGATGCTTTTGGAGTGTTTGCACAGCCACCACCAGCTCAAAA CCAACAAGCACAACAAGCGCCACTTTTTGATGCTTTCGGTACCTCttcta cagctgcaccaacaacAAGTCAACCGACAGCAAACgcttcttttgatttc tttgctTCTTCCGCTGGACCAGTATCGACAGCTTCCTCTTCTGCTACTGA TTTCTTTGCCATGTCTTCGAATACAAGTCAACAACCAGCAGCATCCTCGT CTGCATTTGGAGTGACTTCTGATGCAGgTCTTTCAGTTGGAAACAACAGC GGTGGAGATAAATAT Run BLAST on NCBI transcript from alignment at scaffold_167:1667648..1669242- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050123 ID=TCONS_00050123|Name=TCONS_00050123|organism=Clytia hemisphaerica|type=transcript|length=1595bp|location=Sequence derived from alignment at scaffold_167:1667648..1669242- (Clytia hemisphaerica) CNCAAATCTATATCAATGGCAAGTTTTACACCACAAGAAATGGAATTTCT
ACAATCACATGGCAATGAGGTTTTACTAATTTTGTCTTTATTTTTCTAAA
CTTTTTTAAATCGTTTTTCTTTGAATTGATGTCCCTATTTGCAACAAACC
AAAATGATAAGAACTATTGATTTTTTAATTGTGATTTGACAAATTTGATT
TTTTATACAGCATTGCATCCTGATTAGTGTTTTCAATATTTTCTCTCTTC
CATGTTCATTCAAGGTTTGTCGGAGTACATGGCTTGCATTATGGGAGTCA
AGTGCCGCACCTGAACCAGATTCTCGTGAAGAACAAAAAGTGAAAGATTT
CCTTGGGAAAAAATATGAAAGGAAAATGTGGTACAGCAGTAAACCAAAGG
CAAAAGCACAAGCAGCAGAACCTGAAGCAAAACCGTTGAAAACATTGTTG
GGTGAAAATTCCCCTCAAGTTATTGTAGGCTCTAAACAAGAACAAAAGTC
TGTAAGTAAAACAATTGAGTTTTGAGCTGAGTTGTTGTTTTTAAAAATTC
TGAGTATAAAATTCCATAAAGTTTAATTCAGCATGAAAAGTTATCCACAA
TAATAATAAAGTGATTATTTCATAATAATGAAATTAATTATCAAATATCA
TCTATACCAATACTGAAATATTCCAGCATTCAATCATTTCTACTTATAGG
CATCTATAAAATTACCACAATCTGCTGCACCTACCCCTCAACAACCTGTG
TTACACCAACCTGAGAAGAAATCTAATTTCGACCTCCTTGGTGACCTGAG
TGGTGACCCTTTTGCTTCATCTGCTCCACAACCCACAGCAAGTAGTACGT
AATGAAATTCCTTTTTAGAAACCTGTAAACTTTGGTTCTTTAAATGCATT
AATTTTGATTCTTTCATATTTTGTGGAGTCTTATCCATTGATTTAAATTG
TTTGAAGAAAATCAAAAGTCTAAATTTTCAATTTATCAATAAAAACCAAC
AAATAAAATGTTGAATATTTTCAGACTCAGCAGATGCTTTTGGAGTGTTT
GCACAGCCACCANTGTTGAATATTTTCAGACTCTGCAGATGCTTTTGGAG
TGTTTGCACAGCCACCACCAGCTCAAAACCAACAAGCACAACAAGCGCCA
CTTTTTGATGCTTTCGGTACCTCTTCTACAGCTGCACCAACAACAAGTCA
ACCGACAGCAAACGCTTCTTTTGATTTCTTTGCTTCTTCCGCTGGACCAG
TATCGACAGCTTCCTCTTCTGCTACTGATTTCTTTGCCATGTCTTCGAAT
ACAAGTCAACAACCAGCAGCATCCTCGTCTGCATTTGGAGTGACTTCTGA
TGCAGGTAATCTCATCGAATGCCAGTAGTCTTTGAAATGGTAACAATGAA
CAATTTTGAAAATAATTGATTACAATCTCGTGCTCAATTAATTGTTTATA
GCAGAAGTTCCCCTGCACAAGTGCACATATTGTTTTAGACCCCCTAAAAG
ATACATTATCTTTCTTGATAATAATAAGGATACTACTATTTTATTTTATT
TTGTAAGGTCTTTCAGTTGGAAACAACAGCGGTGGAGATAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
Feature Name | Unique Name | Species | Type |
TCONS_00050123-exon-scaffold_167-1575043694:1669174..1669242 | TCONS_00050123-exon-scaffold_167-1575043694:1669174..1669242 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1575043694:1668742..1668978 | TCONS_00050123-exon-scaffold_167-1575043694:1668742..1668978 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1575043694:1668399..1668543 | TCONS_00050123-exon-scaffold_167-1575043694:1668399..1668543 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1575043694:1667888..1668163 | TCONS_00050123-exon-scaffold_167-1575043694:1667888..1668163 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1575043694:1667648..1667685 | TCONS_00050123-exon-scaffold_167-1575043694:1667648..1667685 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1510915933:1669174..1669242 | TCONS_00050123-exon-scaffold_167-1510915933:1669174..1669242 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1510915933:1668742..1668978 | TCONS_00050123-exon-scaffold_167-1510915933:1668742..1668978 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1510915933:1668399..1668543 | TCONS_00050123-exon-scaffold_167-1510915933:1668399..1668543 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1510915933:1667888..1668163 | TCONS_00050123-exon-scaffold_167-1510915933:1667888..1668163 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1510915933:1667648..1667685 | TCONS_00050123-exon-scaffold_167-1510915933:1667648..1667685 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1491911889:1669174..1669242 | TCONS_00050123-exon-scaffold_167-1491911889:1669174..1669242 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1491911889:1668742..1668978 | TCONS_00050123-exon-scaffold_167-1491911889:1668742..1668978 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1491911889:1668399..1668543 | TCONS_00050123-exon-scaffold_167-1491911889:1668399..1668543 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1491911889:1667888..1668163 | TCONS_00050123-exon-scaffold_167-1491911889:1667888..1668163 | Clytia hemisphaerica | exon |
TCONS_00050123-exon-scaffold_167-1491911889:1667648..1667685 | TCONS_00050123-exon-scaffold_167-1491911889:1667648..1667685 | Clytia hemisphaerica | exon |
Position
The following features are aligned
Aligned Feature | Feature Type | Alignment Location |
scaffold_167 | supercontig | scaffold_167:1667648..1669242 - |
Blast
BLAST of TCONS_00050123 vs. Swiss-Prot (Human)
Match: AGFG2 (Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2) HSP 1 Score: 102.834 bits (255), Expect = 7.523e-25 Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 1
Query: 4 KSISMASFTPQEMEFLQSHGNEVCRSTWLALWESSAAPEPDSREEQKVKDFLGKKYERKMWY------------SSXXXXXXXXXXXXXXXXXTLLGENSPQVIVGSKQEQKSASIKLPQSAAPTPQQPVLHQPEKKSNFDLLGDLSGDPFASSAPQ 438
KSISM +FT E+ FLQS GNEVCR WL L+++ + PDSR+ QKVK+FL +KYE+K WY Q + PE KPL+TLLG+ +P + V + + S +++ QP H KK++ DLL D+ GDPFA APQ
Sbjct: 84 KSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSSQPVSQSHARTSQARSTQPPPHSSVKKASTDLLADIGGDPFA--APQ 238
The following BLAST results are available for this feature:
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