TCONS_00050123 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050123
Unique NameTCONS_00050123
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length765

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050123 ID=TCONS_00050123|Name=TCONS_00050123|organism=Clytia hemisphaerica|type=transcript|length=765bp
CNCAAATCTATATCAATGGCAAGTTTTACACCACAAGAAATGGAATTTCT
ACAATCACATGGCAATGAGgtttgtcgGAGTACATGGCTTGCATTATGGG
AGTCAAGTGCCGCACCTGAACCAGATTCTCGTGaagaacaaaaagtgaaa
gATTTCCTTGGGAAAAAATATGAAAGGAAAATGTGGTACAGCAGTAAACC
AAAGGCAAAAGCACAAGCAGCAGAACCTGAAGCAAAACCGTTGAAAACAT
TGTTGGGTGAAAATTCCCCTCAAGTTATTGTAGGCTCTAAACAAGAACAA
AAGTCTGCATCTATAAAATTACCACAATCTGCTGCACCTACCCCTCAACA
ACCTGTGTTACACCAACCTGAGAAGAAATCTAATTTCGACCTCCTTGGTG
ACCTGAGTGGTGACCCTTTTGCTTCATCTGCTCCACAACCCACAGCAAGT
AACTCTGCAGATGCTTTTGGAGTGTTTGCACAGCCACCACCAGCTCAAAA
CCAACAAGCACAACAAGCGCCACTTTTTGATGCTTTCGGTACCTCttcta
cagctgcaccaacaacAAGTCAACCGACAGCAAACgcttcttttgatttc
tttgctTCTTCCGCTGGACCAGTATCGACAGCTTCCTCTTCTGCTACTGA
TTTCTTTGCCATGTCTTCGAATACAAGTCAACAACCAGCAGCATCCTCGT
CTGCATTTGGAGTGACTTCTGATGCAGgTCTTTCAGTTGGAAACAACAGC
GGTGGAGATAAATAT
Run BLAST on NCBI

transcript from alignment at scaffold_167:1667648..1669242-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050123 ID=TCONS_00050123|Name=TCONS_00050123|organism=Clytia hemisphaerica|type=transcript|length=1595bp|location=Sequence derived from alignment at scaffold_167:1667648..1669242- (Clytia hemisphaerica)
CNCAAATCTATATCAATGGCAAGTTTTACACCACAAGAAATGGAATTTCT
ACAATCACATGGCAATGAGGTTTTACTAATTTTGTCTTTATTTTTCTAAA
CTTTTTTAAATCGTTTTTCTTTGAATTGATGTCCCTATTTGCAACAAACC
AAAATGATAAGAACTATTGATTTTTTAATTGTGATTTGACAAATTTGATT
TTTTATACAGCATTGCATCCTGATTAGTGTTTTCAATATTTTCTCTCTTC
CATGTTCATTCAAGGTTTGTCGGAGTACATGGCTTGCATTATGGGAGTCA
AGTGCCGCACCTGAACCAGATTCTCGTGAAGAACAAAAAGTGAAAGATTT
CCTTGGGAAAAAATATGAAAGGAAAATGTGGTACAGCAGTAAACCAAAGG
CAAAAGCACAAGCAGCAGAACCTGAAGCAAAACCGTTGAAAACATTGTTG
GGTGAAAATTCCCCTCAAGTTATTGTAGGCTCTAAACAAGAACAAAAGTC
TGTAAGTAAAACAATTGAGTTTTGAGCTGAGTTGTTGTTTTTAAAAATTC
TGAGTATAAAATTCCATAAAGTTTAATTCAGCATGAAAAGTTATCCACAA
TAATAATAAAGTGATTATTTCATAATAATGAAATTAATTATCAAATATCA
TCTATACCAATACTGAAATATTCCAGCATTCAATCATTTCTACTTATAGG
CATCTATAAAATTACCACAATCTGCTGCACCTACCCCTCAACAACCTGTG
TTACACCAACCTGAGAAGAAATCTAATTTCGACCTCCTTGGTGACCTGAG
TGGTGACCCTTTTGCTTCATCTGCTCCACAACCCACAGCAAGTAGTACGT
AATGAAATTCCTTTTTAGAAACCTGTAAACTTTGGTTCTTTAAATGCATT
AATTTTGATTCTTTCATATTTTGTGGAGTCTTATCCATTGATTTAAATTG
TTTGAAGAAAATCAAAAGTCTAAATTTTCAATTTATCAATAAAAACCAAC
AAATAAAATGTTGAATATTTTCAGACTCAGCAGATGCTTTTGGAGTGTTT
GCACAGCCACCANTGTTGAATATTTTCAGACTCTGCAGATGCTTTTGGAG
TGTTTGCACAGCCACCACCAGCTCAAAACCAACAAGCACAACAAGCGCCA
CTTTTTGATGCTTTCGGTACCTCTTCTACAGCTGCACCAACAACAAGTCA
ACCGACAGCAAACGCTTCTTTTGATTTCTTTGCTTCTTCCGCTGGACCAG
TATCGACAGCTTCCTCTTCTGCTACTGATTTCTTTGCCATGTCTTCGAAT
ACAAGTCAACAACCAGCAGCATCCTCGTCTGCATTTGGAGTGACTTCTGA
TGCAGGTAATCTCATCGAATGCCAGTAGTCTTTGAAATGGTAACAATGAA
CAATTTTGAAAATAATTGATTACAATCTCGTGCTCAATTAATTGTTTATA
GCAGAAGTTCCCCTGCACAAGTGCACATATTGTTTTAGACCCCCTAAAAG
ATACATTATCTTTCTTGATAATAATAAGGATACTACTATTTTATTTTATT
TTGTAAGGTCTTTCAGTTGGAAACAACAGCGGTGGAGATAAATAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031731XLOC_031731Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050123-exon-scaffold_167-1575043694:1669174..1669242TCONS_00050123-exon-scaffold_167-1575043694:1669174..1669242Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1575043694:1668742..1668978TCONS_00050123-exon-scaffold_167-1575043694:1668742..1668978Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1575043694:1668399..1668543TCONS_00050123-exon-scaffold_167-1575043694:1668399..1668543Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1575043694:1667888..1668163TCONS_00050123-exon-scaffold_167-1575043694:1667888..1668163Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1575043694:1667648..1667685TCONS_00050123-exon-scaffold_167-1575043694:1667648..1667685Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1510915933:1669174..1669242TCONS_00050123-exon-scaffold_167-1510915933:1669174..1669242Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1510915933:1668742..1668978TCONS_00050123-exon-scaffold_167-1510915933:1668742..1668978Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1510915933:1668399..1668543TCONS_00050123-exon-scaffold_167-1510915933:1668399..1668543Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1510915933:1667888..1668163TCONS_00050123-exon-scaffold_167-1510915933:1667888..1668163Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1510915933:1667648..1667685TCONS_00050123-exon-scaffold_167-1510915933:1667648..1667685Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1491911889:1669174..1669242TCONS_00050123-exon-scaffold_167-1491911889:1669174..1669242Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1491911889:1668742..1668978TCONS_00050123-exon-scaffold_167-1491911889:1668742..1668978Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1491911889:1668399..1668543TCONS_00050123-exon-scaffold_167-1491911889:1668399..1668543Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1491911889:1667888..1668163TCONS_00050123-exon-scaffold_167-1491911889:1667888..1668163Clytia hemisphaericaexon
TCONS_00050123-exon-scaffold_167-1491911889:1667648..1667685TCONS_00050123-exon-scaffold_167-1491911889:1667648..1667685Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:1667648..1669242 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.23248e-08	1.89718	5.30438	5.34864	0	1.86203	0	1.35748e-08	5.91814	9.68746	9.12787	4.71891	13.0892	11.604	0.560724	0	0	0	0	2.65763	0.963699	1.045e-07	5.70399	0	9.92358	5.0363	2.08391	0	2.38525	0.74237
Blast
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BLAST of TCONS_00050123 vs. Swiss-Prot (Human)
Match: AGFG2 (Arf-GAP domain and FG repeat-containing protein 2 OS=Homo sapiens GN=AGFG2 PE=1 SV=2)

HSP 1 Score: 102.834 bits (255), Expect = 7.523e-25
Identity = 67/157 (42.68%), Postives = 90/157 (57.32%), Query Frame = 1 
Query:    4 KSISMASFTPQEMEFLQSHGNEVCRSTWLALWESSAAPEPDSREEQKVKDFLGKKYERKMWY------------SSXXXXXXXXXXXXXXXXXTLLGENSPQVIVGSKQEQKSASIKLPQSAAPTPQQPVLHQPEKKSNFDLLGDLSGDPFASSAPQ 438
            KSISM +FT  E+ FLQS GNEVCR  WL L+++  +  PDSR+ QKVK+FL +KYE+K WY                    Q + PE KPL+TLLG+ +P + V +    +  S    +++     QP  H   KK++ DLL D+ GDPFA  APQ
Sbjct:   84 KSISMTTFTEPEVVFLQSRGNEVCRKIWLGLFDARTSLVPDSRDPQKVKEFLQEKYEKKRWYVPPDQVKGPTYTKGSASTPVQGSIPEGKPLRTLLGDPAPSLSVAASTSSQPVSQSHARTSQARSTQPPPHSSVKKASTDLLADIGGDPFA--APQ 238
The following BLAST results are available for this feature:
BLAST of TCONS_00050123 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
AGFG27.523e-2542.68Arf-GAP domain and FG repeat-containing protein 2 ... [more]
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