TCONS_00004877 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004877
Unique NameTCONS_00004877
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1729

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004877 ID=TCONS_00004877|Name=TCONS_00004877|organism=Clytia hemisphaerica|type=transcript|length=1729bp
ttagaataCCCCACAAGAAAAaacgaaaatgtcaaaatttaaaactgGCC
TTCTTCTGGTGCAACATATCAAACATCAAAACATCCATTCTGTTTTGAAA
GAAGTCAGTCAATTGGTGGAGAAGAAGCTTTATATTGACTTTCAACAGTC
CTTTTTGAAAAAGCCTTCGTCAGCTGGTGATGCACAAATTGAAAGAAATG
AGTACTTCAACCTACTTTCCATGGTTTACTCGAGACCAAAAGAACTTTGC
AGTCAACTTGAAATGCAAGTTTTGTTACCACCATGTATCAAAGCGAATGA
TCCAAGGAAAGTTAAACAGCCTATTGATATCCTTTTTGTGGCAGATCAAA
ACTCATCGAATAATTTGATAGAACTTGTTGTGAAGGAAATTACGTGCAGT
AATGATGTTGTTTTGAAAGTCATCGGTGAAAATGAATACGTCAACCAGGA
TTCaaccaaataccagtttgatttttcgaaaCTCTATTCTGGTGTAGTTA
TAGGAGGGACTTTTGATCGCATTCACGACGGACATAAACTGTTAATACAA
ACTGCTTTGTTACTGGGCGAAGAGAAATTGACTGTGGGTGTTGCCGACGG
ACCGCTGCTCGAAAAAAAGATCGTCAAAGAACTAATAGAGCCTGTAGACC
AACGCATTGAGAATGTGATTCAACTAATCGATGAATCAAAACCTGGTATT
GAACACAAAGTGGTCCCAATCACCGACCCTTGTGGTCCCTCTGGTACAGA
TGATGATTTGCAACTTCTCTTGGTGTCTGAAGAAACCATCAAGGGAGGTC
CACTGGTCAACCAAGAACGTCAAAAGAATGGCCTGCCTCAACTAGACGTC
ATGAATATTGAACTGGTCGGTGAAAGTTCCACTGATCTATCTGAAAGTCT
AAACGCCGAGGGGAAAGTGAGCTCTTCTGCTGCACGTGTTAGAGAATTAG
GGCGATTGTTACGTGAACCGAACCGACCGCTTGAGGATGGGAAATGTTAC
GTCATCGGTGTGACCGGAGGCATAGCGTCTGGCAAGTCATCTATTGTGAA
AAGGTTTGAGCAAATGGGTGCTTTTACTGTTGACTGTGATTTGCTTGGTC
ATAGAGCGTACAACCCTGGTGAAATGGCTTACAAGAAAGTTGTAGAAGAG
TTCGGCTCACATATTTTAAATGAAGACGGTACTATTAACCGAAGAAAACT
AGGACCCATTGTTTTCGCTGACAAACGAAAGTTAGAGTTATTGAATAGTA
TAGTTTGGCCTGAAATTCATAAGATGAAGCAAGACATTATTGATGAAGTA
TCGAGAGAAGGAAAACATAAGATTGTTGTTTTTGAAGGAGCTGTTCTTTT
TGAAGCAGGATGGGACAAAGAAGCTAACGAGGTCTGGTGTTGTGTTATCC
CCAAACACGAAGCTGTCCAACGAATCATGGATAGGAATAAACTTTCTGAG
GAAGAAGCCTTGAAACGCATCGCTTCACAAATGAGTAACGAAGAGCGCGT
CAGCAAATCGCACGTTGTGTTGAGCACGTTATGGGAAAGAGACTTCACAC
AGaaacaatgtgaaaaagcttggaAGTTATTGAATGAACGCATTAGCCTT
GGAACGAAACCTCTGTCTTCACTTTGAaccaaattcttttttttatgatt
ttttaaagtactttttttggagaaaatccAGGACGTAAGGTTGATTTATA
GAGATAGAACCCTTGTTGATGGTCTTCCA
Run BLAST on NCBI

protein sequence of TCONS_00004877-protein

>TCONS_00004877-protein ID=TCONS_00004877-protein|Name=TCONS_00004877-protein|organism=Clytia hemisphaerica|type=polypeptide|length=532bp
MSKFKTGLLLVQHIKHQNIHSVLKEVSQLVEKKLYIDFQQSFLKKPSSAG
DAQIERNEYFNLLSMVYSRPKELCSQLEMQVLLPPCIKANDPRKVKQPID
ILFVADQNSSNNLIELVVKEITCSNDVVLKVIGENEYVNQDSTKYQFDFS
KLYSGVVIGGTFDRIHDGHKLLIQTALLLGEEKLTVGVADGPLLEKKIVK
ELIEPVDQRIENVIQLIDESKPGIEHKVVPITDPCGPSGTDDDLQLLLVS
EETIKGGPLVNQERQKNGLPQLDVMNIELVGESSTDLSESLNAEGKVSSS
AARVRELGRLLREPNRPLEDGKCYVIGVTGGIASGKSSIVKRFEQMGAFT
VDCDLLGHRAYNPGEMAYKKVVEEFGSHILNEDGTINRRKLGPIVFADKR
KLELLNSIVWPEIHKMKQDIIDEVSREGKHKIVVFEGAVLFEAGWDKEAN
EVWCCVIPKHEAVQRIMDRNKLSEEEALKRIASQMSNEERVSKSHVVLST
LWERDFTQKQCEKAWKLLNERISLGTKPLSSL
Run BLAST on NCBI

transcript from alignment at sc0000049:684897..686974+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004877 ID=TCONS_00004877|Name=TCONS_00004877|organism=Clytia hemisphaerica|type=transcript|length=2078bp|location=Sequence derived from alignment at sc0000049:684897..686974+ (Clytia hemisphaerica)
ttagaataCCCCACAAGAAAAaacgaaaatgtcaaaatttaaaactgGCC
TTCTTCTGGTGCAACATATCAAACATCAAAACATCCATTCTGTTTTGAAA
GAAGTCAGTCAATTGGTGGAGAAGAAGCTTTATATTGACTTTCAACAGTC
CTTTTTGAAAAAGCCTTCGTCAGCTGGTGATGCACAAATTGAAAGAAATG
AGTACTTCAACCTACTTTCCATGGTTTACTCGAGACCAAAAGAACTTTGC
AGTCAACTTGAAATGCAAGTTTTGTTACCACCATGTATCAAAGCGAATGA
TCCAAGGAAAGTTAAACAGCCTATTGATATCCTTTTTGTGGCAGATCAAA
ACTCATCGAATAATTTGATAGAACTTGTTGTGAAGGAAATTACGTGCAGT
AATGATGTTGTTTTGAAAGTCATCGGTGAAAATGAATACGTCAACCAGGA
TTCaaccaaataccagtttgatttttcgaaaCTCTATTCTGGTGTAGTTA
TAGGAGGGACTTTTGATCGCATTCACGACGGACATAAACTGTTAATACAA
ACTGCTTTGTTACTGGGCGAAGAGAAATTGACTGTGGGTGTTGCCGACGG
ACCGCTGCTCGAAAAAAAGATCGTCAAAGAACTAATAGAGCCTGTAGACC
AACGCATTGAGAATGTGATTCAACTAATCGATGAATCAAAACCTGGTAAG
CATCTTTCTTGAAACAACATACAACTTGAACGTGCATATTTAAATTGATT
TAATCCAAGAGAAAATCGAATCATTTCATTGCATTGTTATATGTCTCTCT
TGGGACTGTTTTAtgtaaaatcacgtgtccaaaacaaacttgtaaaacta
ttgaaacaatcaaaatcagccatatttagtttgattttctattttgacat
gtgacattttttttgattttgtatcccgctgcatacggtttgtttacaaa
tttcgccagtacttttatgtccctttaaatccCATTTATAAGTCAAATCT
GTGTGGTCGAATTACTCTAGGTAGTGTCATCTTTTCTCCTATAGGTATTG
AACACAAAGTGGTCCCAATCACCGACCCTTGTGGTCCCTCTGGTACAGAT
GATGATTTGCAACTTCTCTTGGTGTCTGAAGAAACCATCAAGGGAGGTCC
ACTGGTCAACCAAGAACGTCAAAAGAATGGCCTGCCTCAACTAGACGTCA
TGAATATTGAACTGGTCGGTGAAAGTTCCACTGATCTATCTGAAAGTCTA
AACGCCGAGGGGAAAGTGAGCTCTTCTGCTGCACGTGTTAGAGAATTAGG
GCGATTGTTACGTGAACCGAACCGACCGCTTGAGGATGGGAAATGTTACG
TCATCGGTGTGACCGGAGGCATAGCGTCTGGCAAGTCATCTATTGTGAAA
AGGTTTGAGCAAATGGGTGCTTTTACTGTTGACTGTGATTTGCTTGGTCA
TAGAGCGTACAACCCTGGTGAAATGGCTTACAAGAAAGTTGTAGAAGAGT
TCGGCTCACATATTTTAAATGAAGACGGTACTATTAACCGAAGAAAACTA
GGACCCATTGTTTTCGCTGACAAACGAAAGTTAGAGTTATTGAATAGTAT
AGTTTGGCCTGAAATTCATAAGATGAAGCAAGACATTATTGATGAAGTAT
CGAGAGAAGGAAAACATAAGATTGTTGTTTTTGAAGGAGCTGTTCTTTTT
GAAGCAGGATGGGACAAAGAAGCTAACGAGGTCTGGTGTTGTGTTATCCC
CAAACACGAAGCTGTCCAACGAATCATGGATAGGAATAAACTTTCTGAGG
AAGAAGCCTTGAAACGCATCGCTTCACAAATGAGTAACGAAGAGCGCGTC
AGCAAATCGCACGTTGTGTTGAGCACGTTATGGGAAAGAGACTTCACACA
GaaacaatgtgaaaaagcttggaAGTTATTGAATGAACGCATTAGCCTTG
GAACGAAACCTCTGTCTTCACTTTGAaccaaattcttttttttatgattt
tttaaagtactttttttggagaaaatccAGGACGTAAGGTTGATTTATAG
AGATAGAACCCTTGTTGATGGTCTTCCA

Coding sequence (CDS) from alignment at sc0000049:684897..686974+

>TCONS_00004877 ID=TCONS_00004877|Name=TCONS_00004877|organism=Clytia hemisphaerica|type=CDS|length=3198bp|location=Sequence derived from alignment at sc0000049:684897..686974+ (Clytia hemisphaerica)
atgtcaaaatttaaaactgGCCTTCTTCTGGTGCAACATATCAAACATCA
AAACATCCATTCTGTTTTGAAAGAAGTCAGTCAATTGGTGGAGAAGAAGC
TTTATATTGACTTTCAACAGTCCTTTTTGAAAAAGCCTTCGTCAGCTGGT
GATGCACAAATTGAAAGAAATGAGTACTTCAACCTACTTTCCATGGTTTA
CTCGAGACCAAAAGAACTTTGCAGTCAACTTGAAATGCAAGTTTTGTTAC
CACCATGTATCAAAGCGAATGATCCAAGGAAAGTTAAACAGCCTATTGAT
ATCCTTTTTGTGGCAGATCAAAACTCATCGAATAATTTGATAGAACTTGT
TGTGAAGGAAATTACGTGCAGTAATGATGTTGTTTTGAAAGTCATCGGTG
AAAATGAATACGTCAACCAGGATTCaaccaaataccagtttgatttttcg
aaaCTCTATTCTGGTGTAGTTATAGGAGGGACTTTTGATCGCATTCACGA
CGGACATAAACTGTTAATACAAACTGCTTTGTTACTGGGCGAAGAGAAAT
TGACTGTGGGTGTTGCCGACGGACCGCTGCTCGAAAAAAAGATCGTCAAA
GAACTAATAGAGCCTGTAGACCAACGCATTGAGAATGTGATTCAACTAAT
CGATGAATCAAAACCTGGTATTGAACACAAAGTGGTCCCAATCACCGACC
CTTGTGGTCCCTCTGGTACAGATGATGATTTGCAACTTCTCTTGGTGTCT
GAAGAAACCATCAAGGGAGGTCCACTGGTCAACCAAGAACGTCAAAAGAA
TGGCCTGCCTCAACTAGACGTCATGAATATTGAACTGGTCGGTGAAAGTT
CCACTGATCTATCTGAAAGTCTAAACGCCGAGGGGAAAGTGAGCTCTTCT
GCTGCACGTGTTAGAGAATTAGGGCGATTGTTACGTGAACCGAACCGACC
GCTTGAGGATGGGAAATGTTACGTCATCGGTGTGACCGGAGGCATAGCGT
CTGGCAAGTCATCTATTGTGAAAAGGTTTGAGCAAATGGGTGCTTTTACT
GTTGACTGTGATTTGCTTGGTCATAGAGCGTACAACCCTGGTGAAATGGC
TTACAAGAAAGTTGTAGAAGAGTTCGGCTCACATATTTTAAATGAAGACG
GTACTATTAACCGAAGAAAACTAGGACCCATTGTTTTCGCTGACAAACGA
AAGTTAGAGTTATTGAATAGTATAGTTTGGCCTGAAATTCATAAGATGAA
GCAAGACATTATTGATGAAGTATCGAGAGAAGGAAAACATAAGATTGTTG
TTTTTGAAGGAGCTGTTCTTTTTGAAGCAGGATGGGACAAAGAAGCTAAC
GAGGTCTGGTGTTGTGTTATCCCCAAACACGAAGCTGTCCAACGAATCAT
GGATAGGAATAAACTTTCTGAGGAAGAAGCCTTGAAACGCATCGCTTCAC
AAATGAGTAACGAAGAGCGCGTCAGCAAATCGCACGTTGTGTTGAGCACG
TTATGGGAAAGAGACTTCACACAGaaacaatgtgaaaaagcttggaAGTT
ATTGAATGAACGCATTAGCCTTGGAACGAAACCTCTGTCTTCACTTTGAa
tgtcaaaatttaaaactgGCCTTCTTCTGGTGCAACATATCAAACATCAA
AACATCCATTCTGTTTTGAAAGAAGTCAGTCAATTGGTGGAGAAGAAGCT
TTATATTGACTTTCAACAGTCCTTTTTGAAAAAGCCTTCGTCAGCTGGTG
ATGCACAAATTGAAAGAAATGAGTACTTCAACCTACTTTCCATGGTTTAC
TCGAGACCAAAAGAACTTTGCAGTCAACTTGAAATGCAAGTTTTGTTACC
ACCATGTATCAAAGCGAATGATCCAAGGAAAGTTAAACAGCCTATTGATA
TCCTTTTTGTGGCAGATCAAAACTCATCGAATAATTTGATAGAACTTGTT
GTGAAGGAAATTACGTGCAGTAATGATGTTGTTTTGAAAGTCATCGGTGA
AAATGAATACGTCAACCAGGATTCaaccaaataccagtttgatttttcga
aaCTCTATTCTGGTGTAGTTATAGGAGGGACTTTTGATCGCATTCACGAC
GGACATAAACTGTTAATACAAACTGCTTTGTTACTGGGCGAAGAGAAATT
GACTGTGGGTGTTGCCGACGGACCGCTGCTCGAAAAAAAGATCGTCAAAG
AACTAATAGAGCCTGTAGACCAACGCATTGAGAATGTGATTCAACTAATC
GATGAATCAAAACCTGGTATTGAACACAAAGTGGTCCCAATCACCGACCC
TTGTGGTCCCTCTGGTACAGATGATGATTTGCAACTTCTCTTGGTGTCTG
AAGAAACCATCAAGGGAGGTCCACTGGTCAACCAAGAACGTCAAAAGAAT
GGCCTGCCTCAACTAGACGTCATGAATATTGAACTGGTCGGTGAAAGTTC
CACTGATCTATCTGAAAGTCTAAACGCCGAGGGGAAAGTGAGCTCTTCTG
CTGCACGTGTTAGAGAATTAGGGCGATTGTTACGTGAACCGAACCGACCG
CTTGAGGATGGGAAATGTTACGTCATCGGTGTGACCGGAGGCATAGCGTC
TGGCAAGTCATCTATTGTGAAAAGGTTTGAGCAAATGGGTGCTTTTACTG
TTGACTGTGATTTGCTTGGTCATAGAGCGTACAACCCTGGTGAAATGGCT
TACAAGAAAGTTGTAGAAGAGTTCGGCTCACATATTTTAAATGAAGACGG
TACTATTAACCGAAGAAAACTAGGACCCATTGTTTTCGCTGACAAACGAA
AGTTAGAGTTATTGAATAGTATAGTTTGGCCTGAAATTCATAAGATGAAG
CAAGACATTATTGATGAAGTATCGAGAGAAGGAAAACATAAGATTGTTGT
TTTTGAAGGAGCTGTTCTTTTTGAAGCAGGATGGGACAAAGAAGCTAACG
AGGTCTGGTGTTGTGTTATCCCCAAACACGAAGCTGTCCAACGAATCATG
GATAGGAATAAACTTTCTGAGGAAGAAGCCTTGAAACGCATCGCTTCACA
AATGAGTAACGAAGAGCGCGTCAGCAAATCGCACGTTGTGTTGAGCACGT
TATGGGAAAGAGACTTCACACAGaaacaatgtgaaaaagcttggaAGTTA
TTGAATGAACGCATTAGCCTTGGAACGAAACCTCTGTCTTCACTTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002763XLOC_002763Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004877-proteinTCONS_00004877-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004877-exon-sc0000049-1491911889:684897..685591TCONS_00004877-exon-sc0000049-1491911889:684897..685591Clytia hemisphaericaexon
TCONS_00004877-exon-sc0000049-1510915933:684897..685591TCONS_00004877-exon-sc0000049-1510915933:684897..685591Clytia hemisphaericaexon
TCONS_00004877-exon-sc0000049-1575043694:684897..685591TCONS_00004877-exon-sc0000049-1575043694:684897..685591Clytia hemisphaericaexon
TCONS_00004877-exon-sc0000049-1491911889:685941..686974TCONS_00004877-exon-sc0000049-1491911889:685941..686974Clytia hemisphaericaexon
TCONS_00004877-exon-sc0000049-1510915933:685941..686974TCONS_00004877-exon-sc0000049-1510915933:685941..686974Clytia hemisphaericaexon
TCONS_00004877-exon-sc0000049-1575043694:685941..686974TCONS_00004877-exon-sc0000049-1575043694:685941..686974Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:684897..686974 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
15.6849	15.4318	8.56249	6.36036	5.88604	5.02432	10.7729	10.5068	6.03829	5.35983	7.23604	3.85509	5.96088	5.46499	5.96411	5.91682	7.95486	6.51919	4.04429	3.11563	3.99437	4.49102	17.1009	16.642	11.9034	11.2721	2.27233	2.28847	8.93766	9.18525
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR001977Depp_CoAkinase
IPR014729Rossmann-like_a/b/a_fold
IPR004821Cyt_trans-like
IPR027417P-loop_NTPase
Vocabulary: Molecular Function
TermDefinition
GO:0004140dephospho-CoA kinase activity
GO:0005524ATP binding
GO:0003824catalytic activity
Vocabulary: Biological Process
TermDefinition
GO:0015937coenzyme A biosynthetic process
GO:0009058biosynthetic process
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0009058 biosynthetic process
biological_process GO:0015937 coenzyme A biosynthetic process
molecular_function GO:0005524 ATP binding
molecular_function GO:0003824 catalytic activity
molecular_function GO:0004140 dephospho-CoA kinase activity
Blast
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BLAST of TCONS_00004877 vs. Swiss-Prot (Human)
Match: COASY (Bifunctional coenzyme A synthase OS=Homo sapiens GN=COASY PE=1 SV=4)

HSP 1 Score: 353.214 bits (905), Expect = 1.759e-113
Identity = 182/371 (49.06%), Postives = 253/371 (68.19%), Query Frame = 2 
Query:  485 YSGVVIGGTFDRIHDGHKLLIQTALLLGEEKLTVGVADGPLLEKKIVKELIEPVDQRIENVIQLIDESKPGIEHKVVPITDPCGPSGTDDDLQLLLVSEETIKGGPLVNQERQKNGLPQLDVMNIELVGESSTDLSESLNAEGKVSSSAARVRELGRLLREPNRPLEDGKC-YVIGVTGGIASGKSSIVKRFEQMGAFTVDCDLLGHRAYNPGEMAYKKVVEEFGSHILNEDGTINRRKLGPIVFADKRKLELLNSIVWPEIHKMKQDIIDEVSREGKHKIVVFEGAVLFEAGWDKEANEVWCCVIPKHEAVQRIMDRNKLSEEEALKRIASQMSNEERVSKSHVVLSTLWERDFTQKQCEKAWKLLNERI 1594
            Y G V GGTFDR+H+ HK+L+  A +L +E+L VGVAD  LL+ K++ EL++P  +R+E++ + + + KP +   V+P+ DP GP+G+D  L+ L+VSEET +GG  +N+ R +N L +L +  I+L+     DL  + N E KVSSS+ R R LG LLR P    E   C YVIG+TG   SGKSSI +R + +GAF +D D LGHRAY PG  AY+ VVE FG+ IL++DG INR+ LG  VF +K++L++L  I+WP I K+ ++ +D    EGK ++ V + AVL EAGW    +EVW  VIP+ EAV+RI++R+ LSE  A  R+ SQMS ++ V +SHVVLSTLWE   TQ+Q EKAW LL +RI
Sbjct:  192 YRGAV-GGTFDRLHNAHKVLLSVACILAQEQLVVGVADKDLLKSKLLPELLQPYTERVEHLSEFLVDIKPSLTFDVIPLLDPYGPAGSDPSLEFLVVSEETYRGGMAINRFRLENDLEELALYQIQLL----KDLRHTENEEDKVSSSSFRQRMLGNLLRPPYERPELPTCLYVIGLTGISGSGKSSIAQRLKGLGAFVIDSDHLGHRAYAPGGPAYQPVVEAFGTDILHKDGIINRKVLGSRVFGNKKQLKILTDIMWPIIAKLAREEMDRAVAEGK-RVCVIDAAVLLEAGWQNLVHEVWTAVIPETEAVRRIVERDGLSEAAAQSRLQSQMSGQQLVEQSHVVLSTLWEPHITQRQVEKAWALLQKRI 556
The following BLAST results are available for this feature:
BLAST of TCONS_00004877 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
COASY1.759e-11349.06Bifunctional coenzyme A synthase OS=Homo sapiens G... [more]
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