TCONS_00050094 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050094
Unique NameTCONS_00050094
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1884

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050094 ID=TCONS_00050094|Name=TCONS_00050094|organism=Clytia hemisphaerica|type=transcript|length=1884bp
GATGACTTTCATGTGACAAAAGCTTGTTTATATACGAGAGAAAAATGCTA
CAGTAGTACATTCACAAGAAAGATTCGAAGAAGTAGTTCAGAAGATTATA
GAGCAATTTTATACAAGATGGCTGACAATTCTCATGGATGGAATTGTTTT
GGATGTAATGGAAGAGTTACTGTTGGTCAAAGTCAACGATCTTGGATGTG
GTTTCGTATTGACGTTGCtgtcaaaagatttttaaacgcAAGCGAATCAT
TTTCTGGTCTAAAAGCAGTACGGTCAGTCTAAAATCAGCACTCGCAAACC
TTCAGAGGTACATACTTACAGAAGAAAAAGCCAAGGAGATTGAAAGAGAA
GCAACCAGTTCTATTAAAGTTATTAGCCAGCACATTTCAAACAGTTTTCA
AGGAAACCAAATCAAATTTTCGTTGACCGGTGGATTTGCAGAAGGGTATG
GAGTGCCATTATGGTCAAAATGGCTTTTAAttgaaggagaagaaaaacTT
GACAAAAGTCATGCTCTGATTAGTGATTTCGATTTTATGTTTGAACTTGA
GAATATTTTTGCTGGATACGATCCGTCGGATGATGTTGATTTTCTCATAA
CAACAAGAGACTGCCAACTAGGATTTACTAAACTAATGGTACATAATCAA
GATTCGGGATCAAGATTTGGCTGTGATGGGGAATACCTTTCAGCTAAGTT
TGTTAAGCAAAAAATCTACACATCCGTTTTGGAAACTGACATGGCGATTT
ACCCTggattcaaaaattatttaccACTTTGTTGCTTGAGATCCTCTAAT
GAACATTATGTTGAGACAAAAATATCTGGCCCTGCtattaaattgaaaat
atgcaATACTGGAGTTTCACATCAGGATGTATTACATACAGGCAAACATA
GTTTTAGTGATATCAGAATGAATTCAAAGTATCAACCAGAAACAAATCAT
TTATTAGCTGATATCACATTTAGCATCTGGTGTAAAGAGTTTCCACGCAG
CTCAAATTTTAACAAGAGAAACGACCGACGATGGCCGAAACCTGAAGACG
TAGAGCGAATCGTAAATATGGGGTGTCATTTGGTTCCCAAATCGCAGGAA
GAAAACGATACAAAGGAGTTGACTTGGAGATTCTCTTTCTCAAAAGCTGA
AGTTGAACTCTCAAAACTCATCAATTATACTGCTCGAAAATGTTTTCTTG
CGTTGAAAGTGATCAGTAAAGATCACCTCTCATTTACATGCTCTCGACTA
TCATCTTATCATCTTAAAACAATTTTCCTGAACATGGTGGAGGAAACTGG
TCTGGAAGCTTGGACTGAAGAAAACATTGAAACCATGTTCAGATCTTTGT
TAGGAGAAGTGAAAAGTGCAATTGACAGTAAAAGATGTCAACATTTTTGG
ATTCCCGAGATCAACTTATTTGAAGACATCCCAGACAGAAAGTTATTTTC
cctttcaaagatttttgataagGTTCTTGAAAATCCAGCACCGtatattc
aacataaaaagaaagttgataagGAGCATGACAACCAGTCAAGAGATGTC
TGCGTTGATTTAGAGGATGTTGAAATGATTGGAAATAATTTGACCGAACC
ATTGATACCTAGATCTGCAAGATGATATCTGTGAGATAGCAAATCAAGCG
AAAATACAACACTCTCTTGTCTGTCTTCAATGAACGAGAgcgatttttgc
tgattttagCTGACAAATGTTTTCCTAAAATTAGATAAGTAAAGGCACTA
TTTAACTTTCAGatttattttgtaatttcataaaattttaaactcttcaa
aatttgtcaaatactattcaaattttattttgagataTTTCCTTGTCTTT
TTCGTTCAGGTATTACAAActtcaggcccggcgg
Run BLAST on NCBI

transcript from alignment at scaffold_167:990389..992789-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050094 ID=TCONS_00050094|Name=TCONS_00050094|organism=Clytia hemisphaerica|type=transcript|length=2401bp|location=Sequence derived from alignment at scaffold_167:990389..992789- (Clytia hemisphaerica)
GATGACTTTCATGTGACAAAAGCTTGTTTATATACGAGAGAAAAATGCTA
CAGTAGTACATTCACAAGAAAGATTCGAAGAAGTAGTTCAGAAGATTATA
GAGCAATTTTATGTAAGTGTTCTAATTCTGCTTTAATTGTTCGTTTCTTT
TATATACTTTGTACTCTTTTCGAAATCTCGACTGCTACAAAAAACTTTCT
ACATTTTGACAACAATCTGAGATCAAACAAGGCCTATTTTTTCAAATTTT
TTTGAAAATTTGGTTTTTACTTGACCAACCTCAAAGATTTGTTCAGGTCA
AAGGGGTTGTCAAAAATTTGGTGAAAGTTTGAATGTGATATTTTTTTGGT
AAAGAATGTTACACATCAAAAATTGGATCAAGAAGGTGACAATTTTTGTT
AGCTTTAAACCCGGCATCCTAAGAGGGTTAAACAGGTTTCGTTTGAAATG
GAAGTATTTTTCATCTTTCTTCTTCCAGACAAGATGGCTGACAATTCTCA
TGGATGGAATTGTTTTGGATGTAATGGAAGAGTTACTGTTGGTCAAAGTC
AACGATCTTGGATGTGGTTTCGTATTGGTGCGTACCTCTTCTTAATATTA
GCGTTATTCGCAATACCAAAAGAGTTATATGAAAAATGGAATCGCTTGAC
GCCTGACGAACGCTTGATGTATTTTGGTTTTTATGCTGCTGAAATTGGAA
TCACTGTCCTTTTAGTTTTTCCTTTCAGACGTTGCTGTCAAAAGATTTTT
AAACGCAAGCGAATCATTTTCTGGTCTAAAAGCAGTACGGTCAGTCTAAA
ATCAGCACTCGCAAACCTTCAGAGGTACATACTTACAGAAGAAAAAGCCA
AGGAGATTGAAAGAGAAGCAACCAGTTCTATTAAAGTTATTAGCCAGCAC
ATTTCAAACAGTTTTCAAGGAAACCAAATCAAATTTTCGTTGACCGGTGG
ATTTGCAGAAGGGTATGGAGTGCCATTATGGTCAAAATGGCTTTTAATTG
AAGGAGAAGAAAAACTTGACAAAAGTCATGCTCTGATTAGTGATTTCGAT
TTTATGTTTGAACTTGAGAATATTTTTGCTGGATACGATCCGTCGGATGA
TGTTGATTTTCTCATAACAACAAGAGACTGCCAACTAGGATTTACTAAAC
TAATGGTACATAATCAAGATTCGGGATCAAGATTTGGCTGTGATGGGGAA
TACCTTTCAGCTAAGTTTGTTAAGCAAAAAATCTACACATCCGTTTTGGA
AACTGACATGGCGATTTACCCTGGATTCAAAAATTATTTACCACTTTGTT
GCTTGAGATCCTCTAATGAACATTATGTTGAGACAAAAATATCTGGCCCT
GCTATTAAATTGAAAATATGCAATACTGGAGTTTCACATCAGGATGTATT
ACATACAGGCAAACATAGTTTTAGTGATATCAGAATGAATTCAAAGTATC
AACCAGAAACAAATCATTTATTAGCTGATATCACATTTAGCATCTGGTGT
AAAGAGTTTCCACGCAGCTCAAATTTTAACAAGAGAAACGACCGACGATG
GCCGAAACCTGAAGACGTAGAGCGAATCGTAAATATGGGGTGTCATTTGG
TTCCCAAATCGCAGGAAGAAAACGATACAAAGGAGTTGACTTGGAGATTC
TCTTTCTCAAAAGCTGAAGTTGAACTCTCAAAACTCATCAATTATACTGC
TCGAAAATGTTTTCTTGCGTTGAAAGTGATCAGTAAAGATCACCTCTCAT
TTACATGCTCTCGACTATCATCTTATCATCTTAAAACAATTTTCCTGAAC
ATGGTGGAGGAAACTGGTCTGGAAGCTTGGACTGAAGAAAACATTGAAAC
CATGTTCAGATCTTTGTTAGGAGAAGTGAAAAGTGCAATTGACAGTAAAA
GATGTCAACATTTTTGGATTCCCGAGATCAACTTATTTGAAGACATCCCA
GACAGAAAGTTATTTTCCCTTTCAAAGATTTTTGATAAGGTTCTTGAAAA
TCCAGCACCGTATATTCAACATAAAAAGAAAGTTGATAAGGAGCATGACA
ACCAGTCAAGAGATGTCTGCGTTGATTTAGAGGATGTTGAAATGATTGGA
AATAATTTGACCGAACCATTGATACCTAGATCTGCAAGATGATATCTGTG
AGATAGCAAATCAAGCGAAAATACAACACTCTCTTGTCTGTCTTCAATGA
ACGAGAGCGATTTTTGCTGATTTTAGCTGACAAATGTTTTCCTAAAATTA
GATAAGTAAAGGCACTATTTAACTTTCAGATTTATTTTGTAATTTCATAA
AATTTTAAACTCTTCAAAATTTGTCAAATACTATTCAAATTTTATTTTGA
GATATTTCCTTGTCTTTTTCGTTCAGGTATTACAAACTTCAGGCCCGGCG
G
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031714XLOC_031714Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050094-exon-scaffold_167-1575043694:992678..992789TCONS_00050094-exon-scaffold_167-1575043694:992678..992789Clytia hemisphaericaexon
TCONS_00050094-exon-scaffold_167-1575043694:992213..992311TCONS_00050094-exon-scaffold_167-1575043694:992213..992311Clytia hemisphaericaexon
TCONS_00050094-exon-scaffold_167-1575043694:990389..992061TCONS_00050094-exon-scaffold_167-1575043694:990389..992061Clytia hemisphaericaexon
TCONS_00050094-exon-scaffold_167-1510915933:992678..992789TCONS_00050094-exon-scaffold_167-1510915933:992678..992789Clytia hemisphaericaexon
TCONS_00050094-exon-scaffold_167-1510915933:992213..992311TCONS_00050094-exon-scaffold_167-1510915933:992213..992311Clytia hemisphaericaexon
TCONS_00050094-exon-scaffold_167-1510915933:990389..992061TCONS_00050094-exon-scaffold_167-1510915933:990389..992061Clytia hemisphaericaexon
TCONS_00050094-exon-scaffold_167-1491911889:992678..992789TCONS_00050094-exon-scaffold_167-1491911889:992678..992789Clytia hemisphaericaexon
TCONS_00050094-exon-scaffold_167-1491911889:992213..992311TCONS_00050094-exon-scaffold_167-1491911889:992213..992311Clytia hemisphaericaexon
TCONS_00050094-exon-scaffold_167-1491911889:990389..992061TCONS_00050094-exon-scaffold_167-1491911889:990389..992061Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:990389..992789 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0.828339	0	0.735242	0	1.31393	1.68208	0.403862	0.437664	1.01242	0	7.77513	8.2267	2.3499	1.76688	2.67082	3.79331	1.14642	1.081	0.789791	0.415531	4.62425	8.78532	0.12386	0	0	0.62275
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00050094 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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