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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004929 ID=TCONS_00004929|Name=TCONS_00004929|organism=Clytia hemisphaerica|type=transcript|length=1143bp
CTTCAGTTTGTTTCATGCTCAGCAAACACGTATCTTTACTCTGCTTGTAA
TACGTGTAACAAAACAATGTTTGGTCGACGTGTCTCTACCGCCTTCGACG
CTGGTTCACTTTATCAGTGGCCACTGTTTCGCACAATATCTCATTTCTTG
GCGAGGTAACATCTCTTGCAGTGGTTGTTAGATAAGAAGGAAAATGAAGA
GTTTGTTCTCGTTATTTGCACTTTGTGTGTTGTGTTGTTTTGTTCGTGGT
GAGACAGAGGAAGTCACCATTGAAACTAACGAGGATGACGGACCACAACC
TTTAGTTCTGGACCCACAAGTTGCTGATGAATTACGTAAAGAACGAGCTG
AAGAAAGGAGACACCATAAAGAAGCAGTGGCTGAACACAACAAAACAACT
GAAGCAAAGCCTGAAATCATCACATTGTACCGGCCAAAGATTTGTAAACG
ACAATCTAACCGTGGTGATTTAATGGTAGTCCATTACACCGGATGGTTGG
CCAAGAGCGGACGCAAATTTGACACCACTATTGATCTGAGACGTCGTTAT
GCACCCTTTGAGTTCGTGGTTGGAACTGGTTACGTCATCAAGGGATGGGA
TAAAGGTCTTATGGACATGTGTCCTGGAGAGAAGAGAAAGTTAGTGGTAC
CACCATCGTTAGGTTATGGAAAGAAAGGACTGAGAGGAACTATCCCACCC
AATTCATCGTTGATTTTCGTTATTGACTTATTGGACTTGCGTCGCGCCAC
ACCCAGTTACGTGCCCATCGATCTCTTCACATCACTCGATAAAGATGGCG
ATAAAGCACTGTCCCGTGACGAAATCTCCGATTATGTTCGATACCAATCG
AAGATTTATCGAAAGAAAGACGCACCGATGCCATCGCACGACGAACACGA
GAAGATGGTGGACGAAATTATGCAGAAAGAGGATAAGAACGGAGATGGTG
TCATCCAGCATAACGAGTTCAGTGGACCCAAAATCCCTCATGGTGGTGAa
ctataaacatttttttctatcttagtctttttttgtgtgtttgtttGTGT
AGTTTGATTCATTTTGTATACTTTCATttcgatttttgtattttttgttc
acttcatcaaaaaaagatatcaaaTGTTAAATCTCAAGATTTC Run BLAST on NCBI transcript from alignment at sc0000049:645162..646754- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004929 ID=TCONS_00004929|Name=TCONS_00004929|organism=Clytia hemisphaerica|type=transcript|length=1593bp|location=Sequence derived from alignment at sc0000049:645162..646754- (Clytia hemisphaerica)
CTTCAGTTTGTTTCATGCTCAGCAAACACGTATCTTTACTCTGCTTGTAA
TACGTGTAACAAAACAATGTTTGGTCGACGTGTCTCTACCGCCTTCGACG
CTGGTTCACTTTATCAGTGGCCACTGTTTCGCACAATATCTCATTTCTTG
GCGAGGTAACATCTCTTGCAGTGGTTGTTAGATAAGAAGGAAAATGAAGA
GTTTGTTCTCGTTATTTGCACTTTGTGTGTTGTGTTGTTTTGTTCGTGGT
GAGACAGAGGAAGTCACCATTGAAACTAACGAGGATGACGGACCACAACC
TTTAGTTCTGGACCCACAAGTTGCTGATGAATTACGTAAAGAACGAGCTG
AAGAAAGGAGACACCATAAAGAAGCAGTGGCTGAACACAACAAAACAACT
GAAGCAAAGCCTGAAATCATCACATTGTACCGGCCAAAGATTTGTAAACG
ACAATCTAACCGTGGTGATTTAATGGTAGTCCATTACACCGGATGGTTGG
CCAAGAGCGGACGCAAATTTGACACCACTATTGATCTGAGACGTCGTTAT
GCACCCTTTGAGTTCGTGGTTGGAACTGGTTACGTCATCAAGGGATGGGA
TAAAGGTCTTATGGACATGTGTCCTGGAGAGAAGAGAAAGTTAGTGGTAC
CACCATCGTTAGGTTATGGAAAGAAAGGACTGAGAGGAACTATCCCACGT
GAGTTGTTGTTCACATTCTTTTCTTGTTTAGTAGTTATAGAATTNGGGGG
GTCCTAATAAGGTCCAGGGGTTTGGAAAAATGAAACAAGCGGGGGGGCGT
TTATTTGGAACCTAAGAGTATATGGGTTGGAGGGGGGACTTCGAAAACAA
AATATTTTAAAGGGCGCCAAATTTTGGCTTGGTCACCCCACCACGCACCC
CATATTACAACAATCTAATCCTCATTCGAAATGAGGTGACAAAATGTCCT
TCAAGATTGCCCACCTGCTTTTTTTGCTTATTGATATTGACTTTGGTATT
TTGATTCAAACTTTGTTTAAACCCTCACACGAGTGACAGTGCATTTTTCT
TGCATATTTTCACTGCTTCCATAAATCTTTCATCCCCTTACTTTCAACAG
TTATTACGGGATTTTTCAGTAATTTTTCTTCTTCCTTTTTTTCTACAGCC
AATTCATCGTTGATTTTCGTTATTGACTTATTGGACTTGCGTCGCGCCAC
ACCCAGTTACGTGCCCATCGATCTCTTCACATCACTCGATAAAGATGGCG
ATAAAGCACTGTCCCGTGACGAAATCTCCGATTATGTTCGATACCAATCG
AAGATTTATCGAAAGAAAGACGCACCGATGCCATCGCACGACGAACACGA
GAAGATGGTGGACGAAATTATGCAGAAAGAGGATAAGAACGGAGATGGTG
TCATCCAGCATAACGAGTTCAGTGGACCCAAAATCCCTCATGGTGGTGAA
CTATAAACATTTTTTTCTATCTTAGTCTTTTTTTGTGTGTTTGTTTGTGT
AGTTTGATTCATTTTGTATACTTTCATTTCGATTTTTGTATTTTTTGTTC
ACTTCATCAAAAAAAGATATCAAATGTTAAATCTCAAGATTTC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004929-exon-sc0000049-1575043694:646057..646754 | TCONS_00004929-exon-sc0000049-1575043694:646057..646754 | Clytia hemisphaerica | exon |
| TCONS_00004929-exon-sc0000049-1575043694:645162..645606 | TCONS_00004929-exon-sc0000049-1575043694:645162..645606 | Clytia hemisphaerica | exon |
| TCONS_00004929-exon-sc0000049-1510915933:646057..646754 | TCONS_00004929-exon-sc0000049-1510915933:646057..646754 | Clytia hemisphaerica | exon |
| TCONS_00004929-exon-sc0000049-1510915933:645162..645606 | TCONS_00004929-exon-sc0000049-1510915933:645162..645606 | Clytia hemisphaerica | exon |
| TCONS_00004929-exon-sc0000049-1491911889:646057..646754 | TCONS_00004929-exon-sc0000049-1491911889:646057..646754 | Clytia hemisphaerica | exon |
| TCONS_00004929-exon-sc0000049-1491911889:645162..645606 | TCONS_00004929-exon-sc0000049-1491911889:645162..645606 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:645162..646754 - |
Blast
BLAST of TCONS_00004929 vs. Swiss-Prot (Human)
Match: FKB14 (Peptidyl-prolyl cis-trans isomerase FKBP14 OS=Homo sapiens GN=FKBP14 PE=1 SV=1) HSP 1 Score: 146.362 bits (368), Expect = 4.907e-41 Identity = 79/191 (41.36%), Postives = 117/191 (61.26%), Query Frame = 2
Query: 401 EAKPEIITLYRPKICKRQSNRGDLMVVHYTGWLAKSGRKFDTTIDLRRRYAPFEFVVGTGYVIKGWDKGLMDMCPGEKRKLVVPPSLGYGKKGLRGTIPPNSSLIFVIDLLDLRRATPSYVPIDLFTSLDKDGDKALSRDEISDYVRYQSKIYRKKDAPMPSHDEHEKMVDEIMQKEDKNGDGVIQHNEFS 973
E + +I L +P IC R++ GDLM+VHY G+L K G F +T P F +G +KGWD+GL MC GEKRKL++PP+LGYGK+G +G IPP S+LIF IDLL++R S+ + F +D + D LS+DE+ Y++ + +K + + H+ +V++I KED++ DG I EF+
Sbjct: 24 EPEVKIEVLQKPFICHRKTKGGDLMLVHYEGYLEKDGSLFHST-HKHNNGQPIWFTLGILEALKGWDQGLKGMCVGEKRKLIIPPALGYGKEG-KGKIPPESTLIFNIDLLEIRNGPRSH---ESFQEMDLNDDWKLSKDEVKAYLKKEF----EKHGAVVNESHHDALVEDIFDKEDEDKDGFISAREFT 205
The following BLAST results are available for this feature:
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