TCONS_00049897 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049897
Unique NameTCONS_00049897
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2344

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049897 ID=TCONS_00049897|Name=TCONS_00049897|organism=Clytia hemisphaerica|type=transcript|length=2344bp
ttcagagtaaaaataaaaatgaaaaatcatttgACTGTGAATATTGGCAA
TAACCCTCCCTCCATATTTTATTGGTGTGATGCAGATTCATATGACAATT
TGAAGAAAAGCATTGAAAAACGTTATGAGATTCCAGCTTCATGTCAAGGC
ATTGAACATCAAGGAATTATTTTGGATACAGAAACTTTTGAAGAACTTTA
TCAAAAACGATTGCAGTTTGATATTAAACTTGATGTTATTATTGATGATA
GTACTGGTAACTTGATTGATTCTACCTTAGTACATACCCGAAGAAATCTt
gccttgaaaaaaaattcaggaataaggaatataaaaattattgatttgtc
tagACACTTGTATCAATCCTGTCAAATTATTTATAAAGATTTGGATATCA
ATACAACGGTACTAGATCTGAAGAAAAGAGTTTATGCTgaaaaaaggata
aaagaatCGACTGAcagaatcaattttattgatgGGTTTATGATTCTCAC
AGACAATCAATTGTTGGTCGATTTATTCCTGGATGGATTCTTAAAGTATA
CTCAATTCTCTTTCAATATCGTAGTTATTACAGTGGATGATTGTATATTC
GATATGTTTGAGAATGATGATGAAAATACTACAATCGATATCAAATTCcg
tgaaatcaaaatttcaatgcACGGAATAGAAGCTAAAAGGCAAATTGGAT
ATCCAATATTATATATAGGTTCTTTTTATCTTGAGGACATAAAAGTATGG
ATCAGAGACTTGTATCAGATTCCTATTGAAGAACAGACTATTGGATATTG
TGACGGACCAATTTTTACCAATAACTTGTCACGTGTCTGGCTCGATCGAT
CTTATCAACTAAAAAATATGGAGCTTCATCTATACGTTCATTACACTGAC
AAAACTGATTTAAAGGAAATTTATACTCAGAACGATATAAGAATGATGGA
ACCTATAAAAATTGTTAGTGGAAACGAGGAAaatatttggtatttttatt
atAGAGGGAACAATGGACCATCTCTTAATGATTTCCTTCATGAAACCTTT
GGAATTCGAAAAGATATACGTAggtttcttttctttgtaaatCAAAATCG
TGTCAAATATTCAcaaattgacatttttagaTGTAAAAAAATCAGACTAG
CAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAACCA
TTAGGTTTATCTAGAGTCGGTTCAATTATTATTAAATGCCCTAATACCGG
TTCAACGTTCTGTAGTATACCTTTATCGCAATGGGAATTTTTTGTTAATC
CTGAAGATGTGTGCAATGAGATTATTAAAAAACATCGAGAATTTTTCTAT
ACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACCAT
CATAGAAAGCTTATTCataagagaaaatgaaattttcgaaaacGTCGACG
TAACCTTGTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATG
CATCATTTAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCA
ATTTACAATAGATTTGTTTCAGCAAGAAACTCTGTTAACTGTTGGAGATC
TCAAAAGAACAATCTATGAAATAAAAGACATTGCACCACATTTGCAATCA
CTGTTTTGTTACAAATTTAATGATTTTCAGTTAGAAGGTTTCATGgaaat
attttcactttcaaCGGTTGTCAAAGAAAATGATTCGATTACTCTTAACT
TGATTGTCAAACCAGCAAAAGAATTACAAGTAGTTATCAAATGTGCTGGA
CATCTTCTCAGTGAAACTATCGATTTAAATATGAAGGAAACAGATACGAT
ATCAGATATTAAGAAGGAAATATCAAAAATTACCAATCATCCGTCTTCCA
TTATATCAATCCTAAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGAAT
ATAGTTGGATTTGATGACAATGACCAACTTTggaatctgaaattttcaga
aaccATTTCAATTAAATTATATGCAATGTTGCAGGTATTGGTTTCGATTA
AAGCTACTGATTTAACCATCCACCAACGTTCATTTCGAATTACCAACTTC
AAATCCAATAGAATCAGAAACATTGCTCAAGCcttagaaaaagagaaaaa
tctttttggatCTACTCCAAAGCTTGTTACAAAACCAGGCATCACCCTGG
AAACAAAGTTAATAGATATTGGTGAAGAATTAATTGAATTTGTTTCGCAA
CCTTCTTCCACCAAATGTTTATTGtcataaaataatatttgtgtATCTTA
AAGAGAAGTCATTTTAACAGTAAAggtttttttgcatgaaattg
Run BLAST on NCBI

transcript from alignment at scaffold_167:425447..427790+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049897 ID=TCONS_00049897|Name=TCONS_00049897|organism=Clytia hemisphaerica|type=transcript|length=2344bp|location=Sequence derived from alignment at scaffold_167:425447..427790+ (Clytia hemisphaerica)
ttcagagtaaaaataaaaatgaaaaatcatttgACTGTGAATATTGGCAA
TAACCCTCCCTCCATATTTTATTGGTGTGATGCAGATTCATATGACAATT
TGAAGAAAAGCATTGAAAAACGTTATGAGATTCCAGCTTCATGTCAAGGC
ATTGAACATCAAGGAATTATTTTGGATACAGAAACTTTTGAAGAACTTTA
TCAAAAACGATTGCAGTTTGATATTAAACTTGATGTTATTATTGATGATA
GTACTGGTAACTTGATTGATTCTACCTTAGTACATACCCGAAGAAATCTt
gccttgaaaaaaaattcaggaataaggaatataaaaattattgatttgtc
tagACACTTGTATCAATCCTGTCAAATTATTTATAAAGATTTGGATATCA
ATACAACGGTACTAGATCTGAAGAAAAGAGTTTATGCTgaaaaaaggata
aaagaatCGACTGAcagaatcaattttattgatgGGTTTATGATTCTCAC
AGACAATCAATTGTTGGTCGATTTATTCCTGGATGGATTCTTAAAGTATA
CTCAATTCTCTTTCAATATCGTAGTTATTACAGTGGATGATTGTATATTC
GATATGTTTGAGAATGATGATGAAAATACTACAATCGATATCAAATTCcg
tgaaatcaaaatttcaatgcACGGAATAGAAGCTAAAAGGCAAATTGGAT
ATCCAATATTATATATAGGTTCTTTTTATCTTGAGGACATAAAAGTATGG
ATCAGAGACTTGTATCAGATTCCTATTGAAGAACAGACTATTGGATATTG
TGACGGACCAATTTTTACCAATAACTTGTCACGTGTCTGGCTCGATCGAT
CTTATCAACTAAAAAATATGGAGCTTCATCTATACGTTCATTACACTGAC
AAAACTGATTTAAAGGAAATTTATACTCAGAACGATATAAGAATGATGGA
ACCTATAAAAATTGTTAGTGGAAACGAGGAAaatatttggtatttttatt
atAGAGGGAACAATGGACCATCTCTTAATGATTTCCTTCATGAAACCTTT
GGAATTCGAAAAGATATACGTAggtttcttttctttgtaaatCAAAATCG
TGTCAAATATTCAcaaattgacatttttagaTGTAAAAAAATCAGACTAG
CAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAACCA
TTAGGTTTATCTAGAGTCGGTTCAATTATTATTAAATGCCCTAATACCGG
TTCAACGTTCTGTAGTATACCTTTATCGCAATGGGAATTTTTTGTTAATC
CTGAAGATGTGTGCAATGAGATTATTAAAAAACATCGAGAATTTTTCTAT
ACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACCAT
CATAGAAAGCTTATTCataagagaaaatgaaattttcgaaaacGTCGACG
TAACCTTGTTCGTCCTACCCAATAAAAGGGTCAAAGAAGTTTGTGAAATG
CATCATTTAGTATACTTGAAAGAAATTAACGTTAAATTTCTGACAGGTCA
ATTTACAATAGATTTGTTTCAGCAAGAAACTCTGTTAACTGTTGGAGATC
TCAAAAGAACAATCTATGAAATAAAAGACATTGCACCACATTTGCAATCA
CTGTTTTGTTACAAATTTAATGATTTTCAGTTAGAAGGTTTCATGgaaat
attttcactttcaaCGGTTGTCAAAGAAAATGATTCGATTACTCTTAACT
TGATTGTCAAACCAGCAAAAGAATTACAAGTAGTTATCAAATGTGCTGGA
CATCTTCTCAGTGAAACTATCGATTTAAATATGAAGGAAACAGATACGAT
ATCAGATATTAAGAAGGAAATATCAAAAATTACCAATCATCCGTCTTCCA
TTATATCAATCCTAAGTGTGGAAAACTGTTTATGGAAATTTGGTGAGAAT
ATAGTTGGATTTGATGACAATGACCAACTTTggaatctgaaattttcaga
aaccATTTCAATTAAATTATATGCAATGTTGCAGGTATTGGTTTCGATTA
AAGCTACTGATTTAACCATCCACCAACGTTCATTTCGAATTACCAACTTC
AAATCCAATAGAATCAGAAACATTGCTCAAGCcttagaaaaagagaaaaa
tctttttggatCTACTCCAAAGCTTGTTACAAAACCAGGCATCACCCTGG
AAACAAAGTTAATAGATATTGGTGAAGAATTAATTGAATTTGTTTCGCAA
CCTTCTTCCACCAAATGTTTATTGtcataaaataatatttgtgtATCTTA
AAGAGAAGTCATTTTAACAGTAAAggtttttttgcatgaaattg
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031630XLOC_031630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049897-exon-scaffold_167-1491911889:425447..427790TCONS_00049897-exon-scaffold_167-1491911889:425447..427790Clytia hemisphaericaexon
TCONS_00049897-exon-scaffold_167-1510915933:425447..427790TCONS_00049897-exon-scaffold_167-1510915933:425447..427790Clytia hemisphaericaexon
TCONS_00049897-exon-scaffold_167-1575043694:425447..427790TCONS_00049897-exon-scaffold_167-1575043694:425447..427790Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:425447..427790 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.5842	2.29152	1.47999	1.25444	1.17321	0.837584	2.2621	2.025	0.765187	0.959964	0.809354	0.661737	0.483378	0.439926	0.169254	0.641271	0.760208	0.686816	0.299724	0.912317	0.617249	1.9719	4.13366	4.80907	0.0949897	0.953486	1.49618	1.13404	0.940071	1.12802
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049897 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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