TCONS_00049890 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049890
Unique NameTCONS_00049890
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length492

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049890 ID=TCONS_00049890|Name=TCONS_00049890|organism=Clytia hemisphaerica|type=transcript|length=492bp
AAAGACATGTATCAGATTCCTGTTGAAGAACAGACTATTGGATATCGTGA
CTGACCAATTTTTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATC
GATCTTATCAACTAGAAAATGTGGAGCTTCAACTATACGTTCATTACACT
GACAAAACTGAGTTAAAGGAAATTTATGCTCAGAACGATATAAAAATGAT
GGAACCTTTAAAAATTGTTAGTGGAAACAAGGAAAATATTTGGTATTATT
ATAGAGGGAACAGTGGACCATCTCTGAATGATTTTCTTCATGAAACCTTT
AGAATTCGAAAAGATCTACGAAggtttcttttctttgtaaatCAAAATCC
TGTCAAACATTCACAAATTGACCTTTTTAGATGTAAAGAAATCAAACTAG
CAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAACCA
TTAGGTTGATCTAGAGTCGGTTCAATTATTATCAAATGCCCT
Run BLAST on NCBI

transcript from alignment at scaffold_167:408373..417570+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049890 ID=TCONS_00049890|Name=TCONS_00049890|organism=Clytia hemisphaerica|type=transcript|length=9198bp|location=Sequence derived from alignment at scaffold_167:408373..417570+ (Clytia hemisphaerica)
AAAGACATGTATCAGATTCCTGTTGAAGAACAGACTATTGGATATCGTGA
CTGACCAATTTTTACCGATAACGAAGACTTGTCACGTGTCTGGCTCGATC
GATCTTATCAACTAGAAAATGTGGAGCTTCAACTATACGTTCATTACACT
GACAAAACTGAGTTAAAGGAAATTTATGCTCAGAACGATATAAAAATGAT
GGAACCTTTAAAAATTGTTAGTGGAAACAAGGAAAATATTTGGTATTATT
ATAGAGGGAACAGTGGACCATCTCTGAATGATTTTCTTCATGAAACCTTT
AGAATTCGAAAAGATCTACGAAggtttcttttctttgtaaatCAAAATCC
TGTCAAACATTCACAAATTGACCTTTTTAGATGTAAAGAAATCAATTTAG
CAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTTGAACCA
TTAGGTTTATCTAGAGTCGGTTCGATTATTATCAAATGCCCTAATACCGG
TTCAGTTTTCTGTAGTATACCCTTATCGCAATGGAAATTTTTTGTCGATC
TTGAAGATGTGTGCAATGAGattattaaaaaacatcaaaaacttttCTAT
ACAAAAATTTGGCTTGCACATGATGGTAACAAGTTAGACAAAGATACCAT
CATAGAAAGCTTATTCATtagagaaaatgaaattttcgaaaacGTCGACN
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cccccccccagttgctacggcactgcagataatacattagataccaaatt
gtcagtttttgagcattgcttagattaaaatataagaaGAGAAAGTGCCA
ACCCTATGGTCTGGTAGGCTGCTTATAATTcaatcaccaaacatagaatc
tagccccAAGGTCCATCGGAAAAAaattaggtgacccctaacccctagcc
acaggctaaaatcaggtaccaattgctgctcgaccttttagccccctccc
cctcaggccagggggggggggttccagccatgCGGAACAATCCATTATCG
CCTGAAAAACAAGTTtacttgaatttctcgagctgtacttaatatttttc
ataaagttttgaacaCTGATGCAAATTGGCAATATTTAAAATGTGACTGA
TTCTCAACAAACATGCTTTTCCGGCCTAAAttaccggaaatatgctggaa
aaccagtttttggcattttttagagatttcatatcagtttttatgatttt
tgcacaaagatgcgtattagcaatgtccaaaacatggttgatttggattt
ttgagaaaaattttttccggtcgaaatgCTTGAAATATGGTGTTTCTTat
tttacttactttttttattaCCATTCTATATCAtttatcatcaggtaggt
ccaatatgCATTGTACTTGTTTACTTTTATTCCTATCTTGAGATTTAAGC
AATTAATTTGCTCAAAATTCAACTAATTCAGGCTGATGGTTGTTCTTATA
TATTGTTCTtattatttgacatttttggagCCTAATAGTTCTTATTGTGT
TGTTCTTGTAAAAGAAGAAGAGTGTTTGTTAGGTATCAGCTatctttttc
ttaaagatataaGCAATCACGACGCttgaaaatgataaacaataaataaa
tcaatttttgtcctttttttctttcagagtaaaaataaaaatgaaaaatc
atttgACTGTGAATATTGGCAACAATCCTCCCTCCATATTTTACTGGTGT
GATGCAGATTCATATGacaatttgaagaaaagtattgaaaaaCGTTATGA
GATTCCAGCTTCATGTCAAGGCATTGAACATCAAGGAATTATTTTGAACA
CAGAAACTTTTGAAGAACTTTATCAAAAACGATTGCAGTTTGATATTAAA
CTTGATGTTATTATTGATGATAGTACTGGTAACTTGATTGATTATACCTT
AGTGCATACCCGTAGAAATCTTGCCTTGGAAAAAAGTTCAGGAATAAGGA
ATATAAAAATTATTGATTTATCTAGACACTTGTATCAATCCTGTCAAATT
ATTTATAAAGATTTGGATATCAATACAACGGTACTAGATCTGAAAAAAAG
AGTTTATGCTgaaaaaaggataaaagaatCGACTAAcagaataaatttta
tttatgGTAAACTTATGATTCTCACAGACAATCAATTGTTGGTCGATTTA
TTCCTGGATGGATTCTTAAAGTATACTCAATTCTCTTTCAATATCGTAGT
TATCACAGTGGATGATTGTATATTCGATATGTTTGAGAATGATGATGAAA
ATACTACAATCAATATCAAATTCcgtgaaatcaaaatttcaatgcAAGGA
ATAGAAGCTATAAGGCAAATCGGATATCCAATATTCGATATAGGTTCTTT
TTATCCTGAGGACATGAAAGTATGGATCAAAGACATGTATCAGATTCCTG
TTGAAGAACAGACTATTGGATATCGTGACGGACCAATTTTTACCGATAAC
GAAGACTTGTCACGTGTCTGGCTCGATCGATCTTATCAACTAGAAAATGT
GGAGCTTCAACTATACGTTCATTACACTGACAAAACTGAGTTAAAGGAAA
TTTATGCTCAGAACGATATAAAAATGATGGACCCTTTAAAAATTGTTAGT
GGAAACAAGGAAAATATTTGGTATTATTATAGAGGGAACAATGGACCATC
TCTTAATGATTTTCTTCATGAAACCTTTGGAATTCGAAAAGATCTACAAA
ggtttattttctttgtaaatCAAAATCCTGTCAAATATTCAcaaattgac
atttttagatttaaagaaaTCAGACTAGCAATTCAAGTAGATGATGATGA
AACAGACTTATTGAAACACCTTAAACCATTAGGTTTATCTAGAGTCGGTT
CAATTATTATTAAATGCCCTAATACCGGTTCAGTTTTCTGTAGTTTACCC
TTATCGCAATGGGAATCTTTTGTCGATCCTGAAGATGTGTGCAATGAGAT
TATTAAAAAACATCGAGAACTTTTCTATACAAAAATTTGGCTTGCACATG
ATGGTAACAAGTTAGGCAAAGATACTATCATAGAAAGCTTATTTATcaga
gaaaatgaaattttggaaaacatCGAGTTAACCTTGTTCGTCCTACCCAA
TAAAAGGGTCAAAGAAGTTTGTGAAATGCATCATTTAGTATACTTGAAAG
AAATTAACGTTAAATTTCTGACAGGTCAATTTACAATAGATTTGTTTCAG
CAAGAAAATCTGTTAACTGTTGGAGAACTCAAAAGAACAATCTATGAAAT
AAAAGACATTGCACCACATTTGCAATCACTGTTTTGTTACAAATTTAGTG
ATTTTCAGTTGGAAGGTtttatggaaatattttcacttttaacAGATGTC
AAAGAAAATGATTCGATTACTCTTAACTTGATTGTCAAACCAGCAAAAGA
ATTACAAGTAGTTATCAAATGTGCTGGACATCTTCACAGTGAAACTATCG
ATTTAAATATGAAGGAAACAGATACAATTTCAGATATTAAGAAGGAAGTA
TCAAAAATTACCAATCATCCGTCTTCCATTATATCAATCCTAAGTGTGGA
AAACTGTTTATGGAAATTTGGTGAGAATATAGTTGGATTTGATGACAATG
ACCAACTTTGGCATCTGAAACTTTCAGAAACCATTTCAATTAAATTATAT
GCAATGTTGCAGGTATTGGTTTCGATTAAAGCTGATTTAACCATCCACCA
ACGTTCATTTCGAATTACCAACTTCAAATCCAATAGAATCAGAAACATTG
CACAAGTcttagaaaaagagaaaaagctTTTCGGGTCTACTCCAAAGATT
GTTACGAAACCAGGCATCACCCTGGAAACAAAGTTAATAGATATTGGTGA
AGAATTAATTGAATTTGTTTCGCAGCCTTCCTCCACCAAATGTTTATTgt
catgaaaataatatttgtgTATCTTAAAGAGAAGTCATTTTAACAGTAAA
ggttttttgcatgaaattgtTGTCTGTTTTTGATAAGTTTCTTCGTTGAT
CTGCGATAGCTTTCTcttaattttccttgaaaaaataCGAAACTTTTTAG
ATTAAAAATCCAAAAGCTCTTTCAATAAATTTGCGAGTTCCTAGATTTTT
AAAACACTGGTAATGTTAATGTCTATTAAACCATTAGAATCTTAACCTTG
TCACTTTACACTGCTTGGCTCCTATCAAAATCTTAATCAATATTAGTATA
ATATCATTTTGAATCAacatctgcaaaataatatttttaatgaTTCAGTG
TGTCTCCAAAAGAGCgaacaaatttattttataaagTAACCTCCTCAAAA
CTCATTATCTTAACTTTTTAATTGCAGTAAACATTCAAGAAGAAATGTTT
ACAATGAgtaataactttttttcacacAATAACATTATTAATAACACTAC
CCATCATTAAGTATGTTTCAATCGTAAAGAAAaacctgatttttgaagcc
agaaCTTTCctaaaatcgccggaacagacCATTATCGCCGGCAAAAcaga
ttttcttgaatttctcgagctctatacttgatatttttcatgaaCTTTAG
GACACTAATAataaatggcaatacctaaaatgtgacagagccttATTTTA
AATAAACATACTGAAAATGCATGCAAGAAATATGCTGCTTCTTATTTTAC
TTACTTTTTTATTTCCATTCTATATTATTTATCATTAGGTAGCTCCAATA
TGCATTGTGCTTGTTTACTTTTATTCCTATCTTGAGATTTAAGCAATTAA
TTTGCTCAAAATTCAGCTATTTCAAGCTGATGATTGTTTTTATATTGTTC
TTcttatttggcatttttgagcctcatagTTCTTATCGCATGCCATGTAA
AATAtgtgcaatctgattggttacaTTACAGTGCATCAACGTCATATTTT
CACTTATTGCACTGTTTGTTTTATTTGCACTGTCGCGCTTCATTTATTGC
ACTGATCAATGCAACAGCttcatttttttgacgtcaatttatttgagaaa
taaaaaaaggaagtaGATTTTTCAAGTCTTGCGATAAACCAATTAAGACA
TAATACCTCGTGCAATAGGGGTTTATTTTCCCATCCCATATTGCACTCTC
TACTATGCGATAACTAatacttattaaaaaaaataccttattacatgaaa
ataaatactgaagtatttaacggccttgaaattaacacacaaaaaattaa
cacgaatttgaTTTGCTTATTCAAgcacaccacggctggttttaattaag
ggggtttttattaattttcaattcgtgttaaatacttccatatttatttt
catgtaataaggCAGTGTTTGTTAGGTATCAGCTAACCTATTCCTAAAGG
TTTAAACAATCGTGATGCTCGAAAATGATAAACAATAGATAAAtcaattt
ttctactttttttttctttcagagtaaaaataaaatatgaaaaatcattT
GACTGTGAATATTGGCAACAACCCTTCCTCTATATTTTACTGATGTGATG
CAGATTCATATGacaatttgaagaaaagtattgaaaaaCGTTTTAAGATT
CCAGTTTCATGTCAAGACATTGAACATCAAGGAATTATTTTAGATACAGA
AACTTTTGAAGAACTGTATCAAAAACGATTGCAGTTTGATATTGAACTTG
ATGTTAATATTACTGATAGCTTGATCGATCCCGTCTTAGTACATGACCGC
AGAAACCTCGCTTTAAAAAAAGGATCAGGAATAAGGAATATTAAAATGAT
TTATTTATCTAGTAACTCATCAGCCTTTCAAATCAATTATAAAGATTTGG
ATATCAGTACAACAGTgttagatttgaaaaaaataatttctgctAAAAAA
AGAGTGTCAACAAAGagaatcaattttatttatgGTAAAAAACATATGAT
TCTCACAGACAATCAGTTGTTAGTCGATTTATTCCTGGATGGGTCCTTAG
AGTATACTCAATTTTCTTTCCATGTCATAGTGATCATAGTGGATGATTGT
ATATTCGATATGTTTGAAAATGATAATGAAAATGCATATATCAAATTcag
tgaaatcaaaatttcaatgcAAGGAATAGAAGCTATAAGGCAAATCGGAT
ATCCAATATTCGATATAGGTTCTTTTTATCCCGAGGACATGAAACTTTGG
ATCAAAGACTTGTATCAGATTCCTATTGAAGAACAGACTTTTGGATATTG
TGACGGACCAATTTTCACCGATAGCGAAGACTTGTCACGTGTCTGGCTCG
ATCGATCTTATCAACTAGAAAATGTGGAGCTTCAGCTATACGTTCATTAC
ACTGACAAAACTGAGTTAAAGGAAATTTATGGTCAGAACGATACAAAAAT
GATGGAACCTTCAAAAATTGTTAGtggaaacaagaaaaatatttggtATT
ATTATTATAGAGGGAACAATGGACCATCTCTTAATGATTTTCTTCATGAA
ACCTTTAGAATTCGAAAAGATCTACGaaggtttcttttttttgtaaatca
AAATCCTGTCAAACATTCACAAATTGACCTTTTTAGATGTAAAGAAATCA
AACTAGCAATTCAAGTAGATGATGATGAAACAGACTTATTGAAACACCTT
GAACCATTAGGTTGATCTAGAGTCGGTTCAATTATTATCAAATGCCCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031630XLOC_031630Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049890-exon-scaffold_167-1491911889:408373..408730TCONS_00049890-exon-scaffold_167-1491911889:408373..408730Clytia hemisphaericaexon
TCONS_00049890-exon-scaffold_167-1510915933:408373..408730TCONS_00049890-exon-scaffold_167-1510915933:408373..408730Clytia hemisphaericaexon
TCONS_00049890-exon-scaffold_167-1575043694:408373..408730TCONS_00049890-exon-scaffold_167-1575043694:408373..408730Clytia hemisphaericaexon
TCONS_00049890-exon-scaffold_167-1491911889:417437..417570TCONS_00049890-exon-scaffold_167-1491911889:417437..417570Clytia hemisphaericaexon
TCONS_00049890-exon-scaffold_167-1510915933:417437..417570TCONS_00049890-exon-scaffold_167-1510915933:417437..417570Clytia hemisphaericaexon
TCONS_00049890-exon-scaffold_167-1575043694:417437..417570TCONS_00049890-exon-scaffold_167-1575043694:417437..417570Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:408373..417570 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.55849	4.99096	2.28745	0.618114	2.27625	1.44816	6.80488	6.47492	1.25657	0.642788	0	1.13276	1.37854	0.970133	1.18116	0.788954	1.97636	0.356199	1.28457	1.07465	0	0.988543	2.88871	0.409095	1.06169	0.912276	0.99901	0.904604	0.845416	0.529401
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049890 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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