TCONS_00050025 (transcript) - C. hemisphaerica

Overview
NameTCONS_00050025
Unique NameTCONS_00050025
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length2641

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00050025 ID=TCONS_00050025|Name=TCONS_00050025|organism=Clytia hemisphaerica|type=transcript|length=2641bp
CTCAAAAGTTATGCTTTCTGGAAAGATTCTGTTATATTTGGTAGCCGTAG
ATACGTTATCGAGTGTCGATGGTCTAACCAGCAGAATACCAATGAAAAAG
TTGTTAAACTCTGGACATAATATTGTCAACACTGAACGTTTTTATTTGGT
AGCTTTTGTCCCAATCAGAATGAAAAGATTTAATCGTAGTGGTTTTGTAT
GGCGTGAAGTTTTAAAATACGCTTATTATGAAATGATTGAAACGTTCGAA
AAAGAGGGGTTGTATTTAAACCTTGATCTGCTTATTCTGGACTCAGAGAA
TCGTTTAGACATTACAACCAGTCATATCATGGATGTATTATCCAAACAGA
TGCGTGATTTTCATTCTCCATGTTGTTCTGCCGGAGCTTTCAACGACCAC
ATTATTGGCTTCATAGGGCCGGCATCTTCATCGACGTCTAACCATGTTTT
AAACTTATTAGCGTTTGACCACTACCCTGTTATTAGTTACTCAGCAACAA
GTGTCCGTTTTCACGACAAAAAAGAGTACCCaaattttatgagaacattA
CCGTCAGATGACGTACAAGTCAAACTAATATTGGATATTTTATTACGTTA
CAATTGGACTTACGTTGCTGTTATTGCGCAAGATGACGAATACGGACGTA
CGGGAATGGACGAACTGAAAAGGTTATTTTCAGAACATAGAATATGTACA
GCTGTAGAAAGAACCATTGCTATTCATAATAAGACTCTAATGGTTAAAGA
GACTAAAGAAGTCTTGAAGTTGATTCAAAATGATCTATTGGCCAACGTCG
TCATTTTATGGATGGACGGCGTCAAACTACCGACTTTCTTTGAAACTgca
gaaaaaataaagttctatAATAAAACTTTCATACTTTCTGAGTCAGCCAA
TGAAACTCCAAGTATTCTTAGTTACGACTCAAATATCATCCGTGGTTTGT
TAAGTATCGTCCCTAAAAGTGGTCAATACAATGCTTTTGAAGATTATTTT
CGACGAATGATGTATAGGAAAGATGCAAAAGATGATTGTTTGTTGAGATC
ATTCTTTGAAGAAAGTGTTGGGATAGACCCTACTTCTGATGCATCGATTA
ACGATTACTGGGGAGATCTACCAATGACCAAGAATGGGTTTGTTTATGAC
TCATTACATGCTTATGGGCAAGCAGTAAAAACATTCGTTAACAAACACAA
CGGAACTTGTAATCACACACATACTAATGTTTGTCTTAGAAGCATCACAA
GTAATCGTTcagattttattcaaaattatttaaaaaaagttgcgTTTATC
AACCTACATAATGAGAAAGTTTCCTTCGATTCTAAAGGGAATGTCAACTG
TACACAATTTTGGATATCGACCATTCAACCTTCCACAAAGCACGAGGGAT
CTTTGTTTTGGAAGCGAATAGGCAACTGGAGTAACGATCAAGGTTtagaa
atgaattttgaaaatttcacatGGAATAATGGTCTAACAATACCCCCGTC
TTCGAAATGTGGAGCTAGGTGTGAACCTGGGTATGAGCATTCGAATGGAT
CCACCGAGTGCTGTTGGACATGTATACCGTGCCAGGGAAACACAATTAAA
CAAAACGTTGGGCATGGTTTGTGTATGACGTGCCAACCTGGTTCGTACAC
AAACAAACAGCACACCAAATGCGTTATATATCTAGAGAAAAGATTCGATT
TCAAGAGCAGTATGGGAATCATTTTATTATCCTTTTCGATCACCAATTTG
ATTGTCATCATATCTTTCACCATCGTTTTTATCGTTTACCGGAAAACCCC
CGTCGTTTTATCCTCGCAATTATCAATCAGTCTAGCTNTTATCCTTTTCG
ACCACCAATTTGATTGTCATCATATCTTTCACCATCGTTTTTATCGTTTA
CCGGAAAACCCCCGTCGTTTTATCCTCGCAACTATCAATCAGTCTAgctc
agtttttctttttggcacTCTTGAATCTAATAGTACCGTTAAGTATCAAT
AAACTAATGGGTATCAAATGTTTAGTATATGGAACCCTAATACCAATTAT
TGGTACATTAGCAATTTTACCGACCGTCTTAAAAACGCAGAGATTGAACA
GGATTTTTATGGCTAAACAAAGAATACACCATCACCATTACTTTCATACG
AAGGACCTGCGTTTGTCAGTTTGTTTGTTacttgctcaagtttttgttac
CGCGTTTTACAGTATTTTCAACAGTTATGATCAGCCAGTCACTAAGGTTG
ACCCTGAAACGCAAACATTTACAATCAACTGTAATTTTAATTGGTTTATT
TACATCCAATTCGGTTTCGTTTTCACCATTGTTTTGTTCTGTGGGATTTC
CGCGTTTCGAGCGCGGGTATTACCTCACAATTATAATGAAACGCGGATGA
TCGCGTATTCAATGTTCATCACGTGTGTAATCCTCGTTTTTACCGTACCC
TTGTTCGTGAGTATCGGCTTGGAATCGCAGACCCTTATCCTCCTATGTGC
ACTTCTCTTGGTAGACTGTAACATTACTCTTTGTATGTATTCACCTAAAG
TGTGGGTCATCATTTTTCGTCCGAACTTAAACACGACCAAATATTTCACA
ATATCGAGAATGAAGCATGTAGAAGAGAGCGTTGCTAGAGA
Run BLAST on NCBI

protein sequence of TCONS_00050025-protein

>TCONS_00050025-protein ID=TCONS_00050025-protein|Name=TCONS_00050025-protein|organism=Clytia hemisphaerica|type=polypeptide|length=666bp
SKVMLSGKILLYLVAVDTLSSVDGLTSRIPMKKLLNSGHNIVNTERFYLV
AFVPIRMKRFNRSGFVWREVLKYAYYEMIETFEKEGLYLNLDLLILDSEN
RLDITTSHIMDVLSKQMRDFHSPCCSAGAFNDHIIGFIGPASSSTSNHVL
NLLAFDHYPVISYSATSVRFHDKKEYPNFMRTLPSDDVQVKLILDILLRY
NWTYVAVIAQDDEYGRTGMDELKRLFSEHRICTAVERTIAIHNKTLMVKE
TKEVLKLIQNDLLANVVILWMDGVKLPTFFETAEKIKFYNKTFILSESAN
ETPSILSYDSNIIRGLLSIVPKSGQYNAFEDYFRRMMYRKDAKDDCLLRS
FFEESVGIDPTSDASINDYWGDLPMTKNGFVYDSLHAYGQAVKTFVNKHN
GTCNHTHTNVCLRSITSNRSDFIQNYLKKVAFINLHNEKVSFDSKGNVNC
TQFWISTIQPSTKHEGSLFWKRIGNWSNDQGLEMNFENFTWNNGLTIPPS
SKCGARCEPGYEHSNGSTECCWTCIPCQGNTIKQNVGHGLCMTCQPGSYT
NKQHTKCVIYLEKRFDFKSSMGIILLSFSITNLIVIISFTIVFIVYRKTP
VVLSSQLSISLAXILFDHQFDCHHIFHHRFYRLPENPRRFILATINQSSS
VFLFGTLESNSTVKYQ
Run BLAST on NCBI

transcript from alignment at scaffold_167:220214..222909-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00050025 ID=TCONS_00050025|Name=TCONS_00050025|organism=Clytia hemisphaerica|type=transcript|length=2696bp|location=Sequence derived from alignment at scaffold_167:220214..222909- (Clytia hemisphaerica)
CTCAAAAGTTATGCTTTCTGGAAAGATTCTGTTATATTTGGTAGCCGTAG
ATACGTTATCGAGTGTCGATGGTCTAACCAGCAGAATACCAATGAAAAAG
TTGTTAAACTCTGGACATAATATTGTCAACACTGAACGTTTTTATTTGGT
AGCTTTTGTCCCAATCAGAATGAAAAGATTTAATCGTAGTGGTTTTGTAT
GGCGTGAAGTTTTAAAATACGCTTATTATGAAATGATTGAAACGTTCGAA
AAAGAGGGGTTGTATTTAAACCTTGATCTGCTTATTCTGGACTCAGAGAA
TCGTTTAGACATTACAACCAGTCATATCATGGATGTATTATCCAAACAGA
TGCGTGATTTTCATTCTCCATGTTGTTCTGCCGGAGCTTTCAACGACCAC
ATTATTGGCTTCATAGGGCCGGCATCTTCATCGACGTCTAACCATGTTTT
AAACTTATTAGCGTTTGACCACTACCCTGTTATTAGTTACTCAGCAACAA
GTGTCCGTTTTCACGACAAAAAAGAGTACCCAAATTTTATGAGAACATTA
CCGTCAGATGACGTACAAGTCAAACTAATATTGGATATTTTATTACGTTA
CAATTGGACTTACGTTGCTGTTATTGCGCAAGATGACGAATACGGACGTA
CGGGAATGGACGAACTGAAAAGGTTATTTTCAGAACATAGAATATGTACA
GCTGTAGAAAGAACCATTGCTATTCATAATAAGACTCTAATGGTTAAAGA
GACTAAAGAAGTCTTGAAGTTGATTCAAAATGATCTATTGGCCAACGTCG
TCATTTTATGGATGGACGGCGTCAAACTACCGACTTTCTTTGAAACTGCA
GAAAAAATAAAGTTCTATAATAAAACTTTCATACTTTCTGAGTCAGCCAA
TGAAACTCCAAGTATTCTTAGTTACGACTCAAATATCATCCGTGGTTTGT
TAAGTATCGTCCCTAAAAGTGGTCAATACAATGCTTTTGAAGATTATTTT
CGACGAATGATGTATAGGAAAGATGCAAAAGATGATTGTTTGTTGAGATC
ATTCTTTGAAGAAAGTGTTGGGATAGACCCTACTTCTGATGCATCGATTA
ACGATTACTGGGGAGATCTACCAATGACCAAGAATGGGTTTGTTTATGAC
TCATTACATGCTTATGGGCAAGCAGTAAAAACATTCGTTAACAAACACAA
CGGAACTTGTAATCACACACATACTAATGTTTGTCTTAGAAGCATCACAA
GTAATCGTTCAGATTTTATTCAAAATTATTTAAAAAAAGTTGCGTTTATC
AACCTACATAATGAGAAAGTTTCCTTCGATTCTAAAGGGAATGTCAACTG
TACACAATTTTGGATATCGACCATTCAACCTTCCACAAAGCACGAGGGAT
CTTTGTTTTGGAAGCGAATAGGCAACTGGAGTAACGATCAAGGTTTAGAA
ATGAATTTTGAAAATTTCACATGGAATAATGGTCTAACAATACCCCCGTC
TTCGAAATGTGGAGCTAGGTGTGAACCTGGGTATGAGCATTCGAATGGAT
CCACCGAGTGCTGTTGGACATGTATACCGTGCCAAGGAAACACAATCNAA
TGGCTCCACCGAGTGTTGTTGGACATGTATACCGTGCCAGGGAAACACAA
TTAAACAAAACGTTGGGCATGGTTTGTGTATGACGTGCCAACCTGGTTCG
TACACAAACAAACAGCACACCAAATGCGTTATATATCTAGAGAAAAGATT
CGATTTCAAGAGCAGTATGGGAATCATTTTATTATCCTTTTCGATCACCA
ATTTGATTGTCATCATATCTTTCACCATCGTTTTTATCGTTTACCGGAAA
ACCCCCGTCGTTTTATCCTCGCAATTATCAATCAGTCTAGCTNTTATCCT
TTTCGACCACCAATTTGATTGTCATCATATCTTTCACCATCGTTTTTATC
GTTTACCGGAAAACCCCCGTCGTTTTATCCTCGCAACTATCAATCAGTCT
AGCTCAGTTTTTCTTTTTGGCACTCTTGAATCTAATAGTACCGTTAAGTA
TCAATAAACTAATGGGTATCAAATGTTTAGTATATGGAACCCTAATACCA
ATTATTGGTACATTAGCAATTTTACCGACCGTCTTAAAAACGCAGAGATT
GAACAGGATTTTTATGGCTAAACAAAGAATACACCATCACCATTACTTTC
ATACGAAGGACCTGCGTTTGTCAGTTTGTTTGTTACTTGCTCAAGTTTTT
GTTACCGCGTTTTACAGTATTTTCAACAGTTATGATCAGCCAGTCACTAA
GGTTGACCCTGAAACGCAAACATTTACAATCAACTGTAATTTTAATTGGT
TTATTTACATCCAATTCGGTTTCGTTTTCACCATTGTTTTGTTCTGTGGG
ATTTCCGCGTTTCGAGCGCGGGTATTACCTCACAATTATAATGAAACGCG
GATGATCGCGTATTCAATGTTCATCACGTGTGTAATCCTCGTTTTTACCG
TACCCTTGTTCGTGAGTATCGGCTTGGAATCGCAGACCCTTATCCTCCTA
TGTGCACTTCTCTTGGTAGACTGTAACATTACTCTTTGTATGTATTCACC
TAAAGTGTGGGTCATCATTTTTCGTCCGAACTTAAACACGACCAAATATT
TCACAATATCGAGAATGAAGCATGTAGAAGAGAGCGTTGCTAGAGA

Coding sequence (CDS) from alignment at scaffold_167:220214..222909-

>TCONS_00050025 ID=TCONS_00050025|Name=TCONS_00050025|organism=Clytia hemisphaerica|type=CDS|length=4002bp|location=Sequence derived from alignment at scaffold_167:220214..222909- (Clytia hemisphaerica)
ATGTATACCGTGCCAGGGAAACACAATTAAACAAAACGTTGGGCATGGTT
TGTGTATGACGTGCCAACCTGGTTCGTACACAAACAAACAGCACACCAAA
TGCGTTATATATCTAGAGAAAAGATTCGATTTCAAGAGCAGTATGGGAAT
CATTTTATTATCCTTTTCGATCACCAATTTGATTGTCATCATATCTTTCA
CCATCGTTTTTATCGTTTACCGGAAAACCCCCGTCGTTTTATCCTCGCAA
TTATCAATCAGTCTAGCTNTTATCCTTTTCGACCACCAATTTGATTGTCA
TCATATCTTTCACCATCGTTTTTATCGTTTACCGGAAAACCCCCGTCGTT
TTATCCTCGCAACTATCAATCAGTCTAGCTCAGTTTTTCTTTTTGGCACT
CTTGAATCTAATAGTACCGTTAAGTATCAATAATCAAAAGTTATGCTTTC
TGGAAAGATTCTGTTATATTTGGTAGCCGTAGATACGTTATCGAGTGTCG
ATGGTCTAACCAGCAGAATACCAATGAAAAAGTTGTTAAACTCTGGACAT
AATATTGTCAACACTGAACGTTTTTATTTGGTAGCTTTTGTCCCAATCAG
AATGAAAAGATTTAATCGTAGTGGTTTTGTATGGCGTGAAGTTTTAAAAT
ACGCTTATTATGAAATGATTGAAACGTTCGAAAAAGAGGGGTTGTATTTA
AACCTTGATCTGCTTATTCTGGACTCAGAGAATCGTTTAGACATTACAAC
CAGTCATATCATGGATGTATTATCCAAACAGATGCGTGATTTTCATTCTC
CATGTTGTTCTGCCGGAGCTTTCAACGACCACATTATTGGCTTCATAGGG
CCGGCATCTTCATCGACGTCTAACCATGTTTTAAACTTATTAGCGTTTGA
CCACTACCCTGTTATTAGTTACTCAGCAACAAGTGTCCGTTTTCACGACA
AAAAAGAGTACCCAAATTTTATGAGAACATTACCGTCAGATGACGTACAA
GTCAAACTAATATTGGATATTTTATTACGTTACAATTGGACTTACGTTGC
TGTTATTGCGCAAGATGACGAATACGGACGTACGGGAATGGACGAACTGA
AAAGGTTATTTTCAGAACATAGAATATGTACAGCTGTAGAAAGAACCATT
GCTATTCATAATAAGACTCTAATGGTTAAAGAGACTAAAGAAGTCTTGAA
GTTGATTCAAAATGATCTATTGGCCAACGTCGTCATTTTATGGATGGACG
GCGTCAAACTACCGACTTTCTTTGAAACTGCAGAAAAAATAAAGTTCTAT
AATAAAACTTTCATACTTTCTGAGTCAGCCAATGAAACTCCAAGTATTCT
TAGTTACGACTCAAATATCATCCGTGGTTTGTTAAGTATCGTCCCTAAAA
GTGGTCAATACAATGCTTTTGAAGATTATTTTCGACGAATGATGTATAGG
AAAGATGCAAAAGATGATTGTTTGTTGAGATCATTCTTTGAAGAAAGTGT
TGGGATAGACCCTACTTCTGATGCATCGATTAACGATTACTGGGGAGATC
TACCAATGACCAAGAATGGGTTTGTTTATGACTCATTACATGCTTATGGG
CAAGCAGTAAAAACATTCGTTAACAAACACAACGGAACTTGTAATCACAC
ACATACTAATGTTTGTCTTAGAAGCATCACAAGTAATCGTTCAGATTTTA
TTCAAAATTATTTAAAAAAAGTTGCGTTTATCAACCTACATAATGAGAAA
GTTTCCTTCGATTCTAAAGGGAATGTCAACTGTACACAATTTTGGATATC
GACCATTCAACCTTCCACAAAGCACGAGGGATCTTTGTTTTGGAAGCGAA
TAGGCAACTGGAGTAACGATCAAGGTTTAGAAATGAATTTTGAAAATTTC
ACATGGAATAATGGTCTAACAATACCCCCGTCTTCGAAATGTGGAGCTAG
GTGTGAACCTGGGTATGAGCATTCGAATGGATCCACCGAGTGCTGTTGGA
CATGTATACCGTGCCAGGGAAACACAATTAAACAAAACGTTGGGCATGGT
TTGTGTATGACGTGCCAACCTGGTTCGTACACAAACAAACAGCACACCAA
ATGCGTTATATATCTAGAGAAAAGATTCGATTTCAAGAGCAGTATGGGAA
TCATTTTATTATCCTTTTCGATCACCAATTTGATTGTCATCATATCTTTC
ACCATCGTTTTTATCGTTTACCGGAAAACCCCCGTCGTTTTATCCTCGCA
ATTATCAATCAGTCTAGCTNTTATCCTTTTCGACCACCAATTTGATTGTC
ATCATATCTTTCACCATCGTTTTTATCGTTTACCGGAAAACCCCCGTCGT
TTTATCCTCGCAACTATCAATCAGTCTAGCTCAGTTTTTCTTTTTGGCAC
TCTTGAATCTAATAGTACCGTTAAGTATCAATAATCAAAAGTTATGCTTT
CTGGAAAGATTCTGTTATATTTGGTAGCCGTAGATACGTTATCGAGTGTC
GATGGTCTAACCAGCAGAATACCAATGAAAAAGTTGTTAAACTCTGGACA
TAATATTGTCAACACTGAACGTTTTTATTTGGTAGCTTTTGTCCCAATCA
GAATGAAAAGATTTAATCGTAGTGGTTTTGTATGGCGTGAAGTTTTAAAA
TACGCTTATTATGAAATGATTGAAACGTTCGAAAAAGAGGGGTTGTATTT
AAACCTTGATCTGCTTATTCTGGACTCAGAGAATCGTTTAGACATTACAA
CCAGTCATATCATGGATGTATTATCCAAACAGATGCGTGATTTTCATTCT
CCATGTTGTTCTGCCGGAGCTTTCAACGACCACATTATTGGCTTCATAGG
GCCGGCATCTTCATCGACGTCTAACCATGTTTTAAACTTATTAGCGTTTG
ACCACTACCCTGTTATTAGTTACTCAGCAACAAGTGTCCGTTTTCACGAC
AAAAAAGAGTACCCAAATTTTATGAGAACATTACCGTCAGATGACGTACA
AGTCAAACTAATATTGGATATTTTATTACGTTACAATTGGACTTACGTTG
CTGTTATTGCGCAAGATGACGAATACGGACGTACGGGAATGGACGAACTG
AAAAGGTTATTTTCAGAACATAGAATATGTACAGCTGTAGAAAGAACCAT
TGCTATTCATAATAAGACTCTAATGGTTAAAGAGACTAAAGAAGTCTTGA
AGTTGATTCAAAATGATCTATTGGCCAACGTCGTCATTTTATGGATGGAC
GGCGTCAAACTACCGACTTTCTTTGAAACTGCAGAAAAAATAAAGTTCTA
TAATAAAACTTTCATACTTTCTGAGTCAGCCAATGAAACTCCAAGTATTC
TTAGTTACGACTCAAATATCATCCGTGGTTTGTTAAGTATCGTCCCTAAA
AGTGGTCAATACAATGCTTTTGAAGATTATTTTCGACGAATGATGTATAG
GAAAGATGCAAAAGATGATTGTTTGTTGAGATCATTCTTTGAAGAAAGTG
TTGGGATAGACCCTACTTCTGATGCATCGATTAACGATTACTGGGGAGAT
CTACCAATGACCAAGAATGGGTTTGTTTATGACTCATTACATGCTTATGG
GCAAGCAGTAAAAACATTCGTTAACAAACACAACGGAACTTGTAATCACA
CACATACTAATGTTTGTCTTAGAAGCATCACAAGTAATCGTTCAGATTTT
ATTCAAAATTATTTAAAAAAAGTTGCGTTTATCAACCTACATAATGAGAA
AGTTTCCTTCGATTCTAAAGGGAATGTCAACTGTACACAATTTTGGATAT
CGACCATTCAACCTTCCACAAAGCACGAGGGATCTTTGTTTTGGAAGCGA
ATAGGCAACTGGAGTAACGATCAAGGTTTAGAAATGAATTTTGAAAATTT
CACATGGAATAATGGTCTAACAATACCCCCGTCTTCGAAATGTGGAGCTA
GGTGTGAACCTGGGTATGAGCATTCGAATGGATCCACCGAGTGCTGTTGG
AC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031691XLOC_031691Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050025-proteinTCONS_00050025-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00050025-exon-scaffold_167-1575043694:221341..222909TCONS_00050025-exon-scaffold_167-1575043694:221341..222909Clytia hemisphaericaexon
TCONS_00050025-exon-scaffold_167-1575043694:220214..221285TCONS_00050025-exon-scaffold_167-1575043694:220214..221285Clytia hemisphaericaexon
TCONS_00050025-exon-scaffold_167-1510915933:221341..222909TCONS_00050025-exon-scaffold_167-1510915933:221341..222909Clytia hemisphaericaexon
TCONS_00050025-exon-scaffold_167-1510915933:220214..221285TCONS_00050025-exon-scaffold_167-1510915933:220214..221285Clytia hemisphaericaexon
TCONS_00050025-exon-scaffold_167-1491911889:221341..222909TCONS_00050025-exon-scaffold_167-1491911889:221341..222909Clytia hemisphaericaexon
TCONS_00050025-exon-scaffold_167-1491911889:220214..221285TCONS_00050025-exon-scaffold_167-1491911889:220214..221285Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_167supercontigscaffold_167:220214..222909 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.4814	0.483667	0.561583	0.533262	1.23937	0.901641	1.44414	1.63292	0.381081	0.42635	0.960667	0.738374	2.42549	2.35768	2.35251	2.72017	0.40519	0.886735	1.7213	1.29818	0.169253	0.0825556	1.405	1.20132	0.125299	0.167739	0.180026	0.256171	1.14959	1.28673
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000337GPCR_3
IPR001828ANF_lig-bd_rcpt
IPR011500GPCR_3_9-Cys_dom
IPR028082Peripla_BP_I
Vocabulary: Cellular Component
TermDefinition
GO:0016021integral component of membrane
Vocabulary: Biological Process
TermDefinition
GO:0007186G-protein coupled receptor signaling pathway
Vocabulary: Molecular Function
TermDefinition
GO:0004930G-protein coupled receptor activity
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0007186 G-protein coupled receptor signaling pathway
cellular_component GO:0016021 integral component of membrane
molecular_function GO:0004930 G-protein coupled receptor activity
Blast
[Close]
BLAST of TCONS_00050025 vs. Swiss-Prot (Human)
Match: GRM1 (Metabotropic glutamate receptor 1 OS=Homo sapiens GN=GRM1 PE=1 SV=3)

HSP 1 Score: 144.436 bits (363), Expect = 4.202e-35
Identity = 129/494 (26.11%), Postives = 229/494 (46.36%), Query Frame = 2 
Query:  383 GAFNDHIIGFIGPASSSTSNHVLNLLAFDHYPVISYSATSVRFHDKKEYPNFMRTLPSDDVQVKLILDILLRYNWTYVAVIAQDDEYGRTGMDELKRLFSEHRICTAVERTIAIHNKTLMVKETKEVLKLIQNDLLANVVILWMDGVKLPTFFETAEKIKFYNK-TFILSESANETPSILSYDSNIIRGLLSIVPKSGQYNAFEDYFRRMMYRKDAKD-----------DCLLRSFFEESVGIDP--TSDASIND-YWGDLPMTKNGFVYDSLHAYGQAVKTFVNKHNGTCNHTHTNVC--LRSITSNRSDFIQNYLKKVAFINLHNEKVSFDSKGNVNCTQFWISTIQPSTKHEGSLFWKRIGNWSNDQGLEMNFENFTWNNGLTIPPSSKCGARCEPGYEH--SNGSTECCWTCIPCQGNTIKQNVGHGLCMTCQPGSYTNKQHTKCVIYLEKRFDFKSSMGIILLSFSITNLXXXXXXXXXXXXYRKTPVV 1807
            G     I G IGP SSS +  V NLL     P I+YSATS+   DK  Y  F+R +PSD +Q + +LDI+ RYNWTYV+ +  +  YG +GMD  K L ++  +C A   +  I++        + + KL +    A VV+ + +G+ +        ++    + + I S+   +   ++        G ++I  +S +  +F+DYF ++    + ++            C L     E+       T + S+ + Y  D   +K GFV ++++A    ++   N H+  C   H  +C  ++ I  ++   + ++L K +FI +  E+V FD KG+    ++ I  +Q +  +     +  +G W   +G+ +N +++      +    S C   C  G       G   CCW C  C+ N   Q+     C  C  G + N   T C     +  ++ +   II ++FS   ++V +  T++F++YR TPVV
Sbjct:  150 GRTKKPIAGVIGPGSSSVAIQVQNLLQLFDIPQIAYSATSIDLSDKTLYKYFLRVVPSDTLQARAMLDIVKRYNWTYVSAVHTEGNYGESGMDAFKELAAQEGLCIA--HSDKIYSNAGEKSFDRLLRKLRERLPKARVVVCFCEGMTVRGLLSAMRRLGVVGEFSLIGSDGWADRDEVIEGYEVEANGGITIKLQSPEVRSFDDYFLKLRLDTNTRNPWFPEFWQHRFQCRLPGHLLENPNFKRICTGNESLEENYVQD---SKMGFVINAIYAMAHGLQ---NMHHALCPG-HVGLCDAMKPIDGSK---LLDFLIKSSFIGVSGEEVWFDEKGDAP-GRYDIMNLQYTEANRYD--YVHVGTW--HEGV-LNIDDYKIQMNKSGVVRSVCSEPCLKGQIKVIRKGEVSCCWICTACKENEYVQD--EFTCKACDLGWWPNADLTGCEPIPVRYLEWSNIESIIAIAFSCLGILVTLFVTLIFVLYRDTPVV 623
The following BLAST results are available for this feature:
BLAST of TCONS_00050025 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
GRM14.202e-3526.11Metabotropic glutamate receptor 1 OS=Homo sapiens ... [more]
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