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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00050012 ID=TCONS_00050012|Name=TCONS_00050012|organism=Clytia hemisphaerica|type=transcript|length=2862bp
ATGAAAAAACATTACTAGTATTGACCCTTCGTGCTTTTGAACCCATTTTC
TCTGATATAAAATTAAGATTGCTATGAAGAGGAGAGGATGTGGAGTTTTA
TCATTCATTTTGTCAGTGGCAACATTGTAAGCTACTTGATGCAACCCCGC
CTATGTTCATTAGCGAAAAATTCTACCCGCAAAAATTTGTACACCTAACA
Taacttaaaggaagaaattttggcgggaatttaatttggcggtcaacttg
aaaatttaaatttggcgggattttaatttggcgggcgaaggacatttttg
ttaaaaaaaaaagccatttaaaaaggaaatatctgttttaaagcctgaaa
taacACAAATTTTGGGGGATAAATAGAGcaacttaaatttggcgggaatt
taatttggcggatgacgaaaaaaactaaatttggcgggaacttaatttgg
cggattttgaccaaatccgccaaattttcttcccgccaaaatttcttctt
ttaaggtaGTCATTTAAACACTATACCCACCTTTTGATAAGAATCACAAG
GTTTGAATTTACAAACTTTTGTTAAAAGGAACAAATATTCTTGAATGACC
CCGAAGTTAAGTAAAATAGGCGTTTCGctttaagaaatttttatttcaag
acaCGGCTCTGATAATTACCAAATGTGTTTTTGTCAAACTACTCGATGTC
TTACATCATTTTTCTGTCAGGAGGACATGGCAAGGAACACTTTAGAAGTA
AGTTCCTCTTTTCAAAGTTCtttaaaattcaattaaaatttaaaaaattc
aggGATAAACTCAATCCTCAGGACAGTCGACTCTTATCATCCATAGGGAA
AGGGTACGTTTCGAAAGAATTAATCTAATCTAATTCTTCACTTTTTACCg
acaaatgtttttgaaaacgaaTTTTTAGCGAATTCTTAACCAgagtaacg
tcaattttttggAGTAATTAAGGCTGGAAGACACCGATAAAATAAGCAAT
CGTTGGGTGGAAAATAGCGACCAGTGCGAGCAGTCTGGAAAGAAACGGCG
CGTGCACAATCACGTGACTTATACATGATTTCTGGGTTGCGTACTGTACA
TAGTTTTGATATTCGTTCTATACGTATATTCAGTAGCGGAAAGAcgtaaa
aagttttttatctaaaatctaaaatcttaAATGTTTCTACGTTTTTACTG
ATATTTtagatATAGAGGTATTAAGACTAAGGAAGATTTCACATGGCGCC
CGATGAAGGACAAGAAAACCAAACAAACACTGATCATTACCGAAGAATNC
ATGGCGCCCGATGAAGGACAAGAAAACGAAACAAACACTGATCATTGACG
ACGAACCAATGACAAAAGCCAgctatcaaaaattgaaaacattgtttAAT
TTGTTGGAAGATCAGATAGCACTTTTACGACCACGCAGGTGATTTGGAAA
TTCAATTTTACAACACCAAAAGAAGTATGCGATAATTTTAAGAACGGACA
GTATTTTCACGAAATCAGAGAAAGTAACGAAAAAGGTTTTTCATCACGGA
ATTGAATAAACGCTGGCACATTTAGGAACTGAATATTGGATCGATGGAAT
AAGAtatatacactacacaatatattgttaGCCAATattgtttacaaaaa
gaaaattcctttttataataaaatacCTGCTTTTTACTtagtacattacg
gtccgcaaaccatattgtcagATATTGttcatcaatatattgtgtagtgt
atgcaGCCCTTAAGACTTTTAAATCGAAAGAACAACAATATTTCACTTTC
TCTCCCCTGGTGGGGTGGCATGTACGAGCGTCTTGAGCGCAGTTCAAAAA
TGTCCTTAAGGAAAACCTTGGGTGAATCTCTAGTGACACTTGAAGAACTA
CAAGCAATGTCAGATCGAAGCATTATTAATAGTATACCACTTTGTTATAC
GTCAAAGAAGATGACATTGATgagcctttttcaaaaaaagaaattgaaaa
aaaaaaaacattctctAAGGTAAAAATAGATTCGAGAAAATATACCTGCA
TGAATTGAGACAAAATAACATTCACAGAAAGAATAAGGAGAGTGATGTAA
CGTAAGTTTAAATCAAATTGTCAACAATTTACACAATGTAAATTTAATTC
AATCATTGATTAACTGTTGATGCTCTGGGTATTGATAACTATTTTGATAG
ATTTGGAATGGAAATTCATGCCGGAATCTGTGATCTCCCTGAAAAAGCTT
CTAAAACAGAAATCCTATTCGTCGCCTGCCGTACGCACCCAGCTTCTGAA
ACCGACCACGTAAAGGTGAACGTGAATGATGAAAGATTCTTCCTCGTTGT
CGATAGCTTCAGTTACCTTCTACCTTGGTTCAATCATAACGAACAACTGC
TCAGATCGTGAAGATGTGCTTTCTCGAATTAAGAAAACAGGAAATATGTT
TGGCTCCTTGAAAAAGTGTTCatttggaaatcaaaaagtaACTTTTAAAG
TAAAAGGAAAAGTTTACGAATCACTCGTCTTGTCAATATTATTGTATGGT
TCTGAATCGTGGTGCTTGACGGAAGAGCTATTTCGCTGACTGCGTAGTTT
TCATAACCGATGCGTTAGAGTTATGTGTAATGTTAATATGGctgatgttt
ttgaaaatcgtaTTACTACTGAGAGTTtgtaggctgcatgcatccccaaa
ttagtttttcaCCCTATTGACTTTAATCTTGACCAAAATAATGAACCAGG
ACCTTCTTCAAGCAATGCCATTCTTCCTACACCTACCGGGTGcggcagaa
aaaactttggacgtttggcgagccactgaggccgaacaaagtcttgttta
gactcaaaacca Run BLAST on NCBI transcript from alignment at scaffold_167:51096..54792- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00050012 ID=TCONS_00050012|Name=TCONS_00050012|organism=Clytia hemisphaerica|type=transcript|length=3697bp|location=Sequence derived from alignment at scaffold_167:51096..54792- (Clytia hemisphaerica)
ATGAAAAAACATTACTAGTATTGACCCTTCGTGCTTTTGAACCCATTTTC
TCTGATATAAAATTAAGATTGCTATGAAGAGGAGAGGATGTGGAGTTTTA
TCATTCATTTTGTCAGTGGCAACATTGTAAGCTACTTGATGCAACCCCGC
CTATGTTCATTAGCGAAAAATTCTACCCGCAAAAATTTGTACACCTAACA
TAACTTAAAGGAAGAAATTTTGGCGGGAATTTAATTTGGCGGTCAACTTG
AAAATTTAAATTTGGCGGGATTTTAATTTGGCGGGCGAAGGACATTTTTG
TTAAAAAAAAAAGCCATTTAAAAAGGAAATATCTGTTTTAAAGCCTGAAA
TAACACAAATTTTGGGGGATAAATAGAGCAACTTAAATTTGGCGGGAATT
TAATTTGGCGGATGACGAAAAAAACTAAATTTGGCGGGAACTTAATTTGG
CGGATTTTGACCAAATCCGCCAAATTTTCTTCCCGCCAAAATTTCTTCTT
TTAAGGTAGTCATTTAAACACTATACCCACCTTTTGATAAGAATCACAAG
GTTTGAATTTACAAACTTTTGTTAAAAGGAACAAATATTCTTGAATGACC
CCGAAGTTAAGTAAAATAGGCGTTTCGCTTTAAGAAATTTTTATTTCAAG
ACACGGCTCTGATAATTACCAAATGTGTTTTTGTCAAACTACTCGATGTC
TTACATCATTTTTCTGTCAGGAGGACATGGCAAGGAACACTTTAGAAGTA
AGTTCCTCTTTTCAAAGTTCTTTAAAATTCAATTAAAATTTAAAAAATTC
AGGGATAAACTCAATCCTCAGGACAGTCGACTCTTATCATCCATAGGGAA
AGGGTACGTTTCGAAAGAATTAATCTAATCTAATTCTTCACTTTTTACCG
ACAAATGTTTTTGAAAACGAATTTTTAGCGAATTCTTAACCAGAGTAACG
TCAATTTTTTGGAGTAATTAAGGCTGGAAGACACCGATAAAATAAGCAAT
CGTTGGGTGGAAAATAGCGACCAGTGCGAGCAGTCTGGAAAGAAACGGCG
CGTGCACAATCACGTGACTTATACATGATTTCTGGGTTGCGTACTGTACA
TAGTTTTGATATTCGTTCTATACGTATATTCAGTAGCGGAAAGACGTAAA
AAGTTTTTTATCTAAAATCTAAAATCTTAAATGTTTCTACGTTTTTACTG
ATATTTATGATATAGAGTAGACTGGAGTCGTTTATAATGCATGTAATACT
AATAATAAACACAAATAATGATACGGGATTTAGTTTGTATAAACGACTGG
AAGAATCCGGTGTTCCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGTTT
GGAGTTAGTGCACAAAGGTTTCTAGACGACTAAAATTTACTTTTTTGCTT
TATTTCTAATATGTCTGAATTAGTCGTCTAGCTTGCTAGACTAGATATAG
AGGTATTAAGACTAAGGAAGATTTCACATGGCGCCCGATGAAGGACAAGA
AAACCAAACAAACACTGATCATTACCGAAGAATNCATGGCGCCCGATGAA
GGACAAGAAAACGAAACAAACACTGATCATTGACGACGAACCAATGACAA
AAGCCAGCTATCAAAAATTGAAAACATTGTTTAATTTGTTGGAAGATCAG
ATAGCACTTTTACGACCACGCAGGTGATTTGGAAATTCAATTTTACAACA
CCAAAAGAAGTATGCGATAATTTTAAGAACGGACAGTATTTTCACGAAAT
CAGAGAAAGTAACGAAAAAGGTTTTTCATCACGGAATTGAATAAACGCTG
GCACATTTAGGAACTGAATATTGGATCGATGGAATAAGATATATACACTA
CACAATATATTGTTAGCCAATATTGTTTACAAAAAGAAAATTCCTTTTTA
TAATAAAATACCTGCTTTTTACTTAGTACATTACGGTCCGCAAACCATAT
TGTCAGATATTGTTCATCAATATATTGTGTAGTGTATGCAGCCCTTAAGA
CTTTTAAATCGAAAGAACAACAATATTTCACTTTCTCTCCCCTGGTGGGG
TGGCATGTACGAGCGTCTTGAGCGCAGTTCAAAAATGTCCTTAAGGAAAA
CCTTGGGTGAATCTCTAGTGACACTTGAAGAACTACAAGCAATGTCAGAT
CGAAGCATTATTAATAGTATACCACTTTGTTATACGTCAAAGAAGATGAC
ATTGATGAGCCTTTTTCAAAAAAAGAAATTGAAAAAAAAAAAACATTCTC
TAAGGTAAAAATAGATTCGAGAAAATATACCTGCATGAATTGAGACAAAA
TAACATTCACAGAAAGAATAAGGAGAGTGATGTAACGTAAGTTTAAATCA
AATTGTCAACAATTTACACAATGTAAATTTAATTCAATCATTGATTAACT
GTTGATGCTCTGGGTATTGATAACTATTTTGATAGATTTGGAATGGAAAT
TCATGCCGGAATCTGTGATCTCCCTGAAAAAGCTTCTAAAACAGAAATCC
TATTCGTCGCCTGCCGTACGCACCCAGCTTCTGAAACCGACCACGTAAAG
GTGAACGTGAATGATGAAAGATTCTTCCTCGTTGTCGATAGCTTCAGTTA
CCTTCTACCTTGGTTCAATCATAACGAACAACTGCTCAGATCGTGAAGAT
GTGCTTTCTCGAATTAAGAAAACAGGAAATATGTTTGGCTCCTTGAAAAA
GTGTTCATTTGGAAATCAAAAAGTAACTTTTAAAGTAAAAGGAAAAGTTT
ACGAATCACTCGTCTTGTCAATATTATTGTATGGTTCTGAATCGTGGTGC
TTGACGGAAGAGCTATTTCGCTGACTGCGTAGTTTTCATAACCGATGCGT
TAGAGTTATGTGTAATGTTAATATGGCTGATGTTTTTGAAAATCGTATTA
CTACTGAGAGTTTGTAGGCTGCATGCATCCCCAAATTAGTTTTTCACCCT
ATTGACTTTAATCTTGACCAAAATAATGAACCAGGACCTTCTTCAAGCAA
TGCCATTCTTCCTACACCTACCGGGTGCGGCAGAAAAAACTTTGGACGTT
TGGCGAGCCACTGAGGCCGAACAAAGTCTTGTTTAGACTCAAAACCA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00050012-exon-scaffold_167-1575043694:53587..54792 | TCONS_00050012-exon-scaffold_167-1575043694:53587..54792 | Clytia hemisphaerica | exon |
| TCONS_00050012-exon-scaffold_167-1575043694:51096..52751 | TCONS_00050012-exon-scaffold_167-1575043694:51096..52751 | Clytia hemisphaerica | exon |
| TCONS_00050012-exon-scaffold_167-1510915933:53587..54792 | TCONS_00050012-exon-scaffold_167-1510915933:53587..54792 | Clytia hemisphaerica | exon |
| TCONS_00050012-exon-scaffold_167-1510915933:51096..52751 | TCONS_00050012-exon-scaffold_167-1510915933:51096..52751 | Clytia hemisphaerica | exon |
| TCONS_00050012-exon-scaffold_167-1491911889:53587..54792 | TCONS_00050012-exon-scaffold_167-1491911889:53587..54792 | Clytia hemisphaerica | exon |
| TCONS_00050012-exon-scaffold_167-1491911889:51096..52751 | TCONS_00050012-exon-scaffold_167-1491911889:51096..52751 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_167 | supercontig | scaffold_167:51096..54792 - |
Blast
The following BLAST results are available for this feature:
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