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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049706 ID=TCONS_00049706|Name=TCONS_00049706|organism=Clytia hemisphaerica|type=transcript|length=939bp
CTTATCACAGTATGGAGGAATATTCATTAAGAATAGTGTTGGACCTTCAC
CAACGTGCTTTTTATAGAAAATACAGTGAGGTGAGACAGAATCAATCTCA
TTTTCACTTGAAGTTgaccaaaaagaaatttttagcaCGTGAAAGTCTGC
CATCTTGAAATCATATAAACTTATGAAATAACTAGTCTAGCTGTGAGTAA
GTTCTAGTCtagaaaaacaaagacaatcGCTAGTCCCAGTCTCGAATTTT
CGTCGCGCATTGGCCATTCTTAGTTGTTGGCAGATCTTTTCACGGATTCA
ATCTGGCAGGAGTGCAGGGAATAAAATAGCTTGAATTTTCCACATATCGT
TGTATTCCTTGAGAGCCACAATGAGTAAATTTGATGGGACCAAGGGACCT
CCAGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAG
GACCAGTATGGCTGATCTGGAAAAATACTTCAAGAAATATGGAGATGTTG
GAGACATTTACATCCCCAGAGACCGGAATACACAGGAGTCACGTGGTTTT
GCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAAGATGCAATGGATGG
CATGGATGGAAAGGTCATTGATGGACGTGAAATTCGAGTAGCCATGGCTA
GGTACGGTCGACCAGCAAACCAATATGATCCAAGACGACAAGGACGCAGT
GGAGGGCGTGGTAGTCGTGATCACAGAGATCGAGACAACCGTGACCGAGA
TCGAGATCGATCAAGACGATCCCCTCGCAGAAGGTGAGCTTTTAATTCAG
GGATACCCCTTCTATTCGATCATATTTTAAGTGAAGCCCTctgaagcatt
tttaaaaaactaaagCTTCATACGTTTGACAATCATTAATTATTGCTATT
TgatgaatgtttgaaaaaccaCTTGACAGGAATTTTCGC Run BLAST on NCBI transcript from alignment at scaffold_165:179583..185839- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049706 ID=TCONS_00049706|Name=TCONS_00049706|organism=Clytia hemisphaerica|type=transcript|length=6257bp|location=Sequence derived from alignment at scaffold_165:179583..185839- (Clytia hemisphaerica)
CTTATCACAGTATGGAGGAATATTCATTAAGAATAGTGTTGGACCTTCAC
CAACGTGCTTTTTATAGAAAATACAGTGAGGTGAGACAGAATCAATCTCA
TTTTCACTTGAAGTTGACCAAAAAGAAATTTTTAGCACGTGAAAGTCTGC
CATCTTGAAATCATATAAACTTATGAAATAACTAGTCTAGCTGTGAGTAA
GTTCTAGTCTAGAAAAACAAAGACAATCGCTAGTCCCAGTCTCGAATTTT
CGTCGCGCATTGGCCATTCTTAGTTGTTGGCAGATCTTTTCACGGATTCA
ATCTGGCAGGAGTGCAGGGAATAAAATAGCTTGAATTTTCCACATATCGT
TGTATTCCTTGAGAGCCACAATGAGTAAATTTGATGGGACCAAGGGACCT
CCAGATATCAATGGAATGGTCAGTCTCAAAGTTGACAATTTAACATACAG
GACCAGTATGGCTGATCTGGAAAAGTAAGTCTAAATTTGTCATTCAGTTA
AAATTGATCATTTATCGTAATCCTCTTTACTTACCCTCTGGCTTTTTAGA
ATCAGAGACAGTGGTATAAAAAGAGTCTTTTCTGAGTAAGAATTTATCAA
TGCTGTACTGTATGTATGTATATTGGAAATCTTGGCTGATTTGTTGTGTT
GAGTCAATTTTTCATCCTCAGATTAAAAACTTTGCTATTAGCGTAGACCT
TTTCGCCTTTCCATCCGCCATATTGAATTGTATGCAAAAATTATGGTAGC
CAAATTGCCGTGGTGAAATTCCCTTAGAAAGTATGCAAAACATATGNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNGGATATCAAGGTGTTTGACGTTTTTGGGTGTGGGTGGGTG
GGTCAGCTTTTAAAACGTCAATTGACGTTCTTCTAACCTAGAATCGATTT
GTGACTGACCCCGCCCTAAGGAGGCGATTCTATCTTTGAAAAGGTGGTTT
TTTGTGGTTTGAAAATGGAATAACTTTGGAACTACTTAACCAATTTTAAC
AAATGACCCCTCATTTTCCTCACAAAGGTAAGGACTTTCAAATAAAATTA
GTTTGGTTTTCAAAATTTGAGGGGAAAATTTTGGCCTGACCACCCTATTT
TAGTTGTACGCCGAAGATCTTCGGCGTTAGTTACACGAAATCCATACTGG
GTAATGGGCCATTCCAGAAAATTTTTGTTACCCCCCATCGGACGACGTGC
ATTTTTAAATATTTTCTAGCCTCGGAAATAATTTTTTTTTTCAGTGGTGG
TCAGAAAGTTCGATAAAAATCCATGTACTTTTGCAAAATGCATTGGAATT
CCACTCTTTTTGTCTGTTTTAATTGAATTGCCTTGGAAATTCATACATTT
TCTACTCTTGCCTTGGAAATTTTGAATTTTGGTGAAAACTTGTGCCCTCC
GGAAATCCTGTGTCGTCCGCCCCCCTGTTACAGACAAATTCTGGAATGCC
CCAATCTTGTAGAAGAAAGATTAAATTTGCTTCTTTTTAAAACTAGAAAT
AATCAAATTCGCCCATCTCTTAGAACTAGCAGTAGCACTTCAAAAACCAT
AACATCACCCACGAAGGTACAAAAATAATCCTTATTCGGCTGACGGTAAA
TTATTCTCCTGGGAATAGAATCGCCAAACAATCAAATCAAAACATCGATC
TGAATGCGTGACGTCGAGTCATAATTACTGCTTTCAGTTTGCGTGTTTTG
CGTGTGTACTCCGTCTTCGTGGAATTTTTAATGGCATGAAAACAGAATAT
GCTATGTCTTCAAGAACAAATTTCTAAAAGGCTTTTGTTGTTCGGTAAAT
ACTTCTTTTTGGATTAAGAAATTCCATCTTTTATTGTTCTAATGATTATA
AAATTTATTTATAAGATGCTTTGTTGTCTTTTTAATCTTTGTGTAAACTT
GCATATGTTTTGCATATTTTCCAACTAAATCCAACCACAGCTTTTTCGTT
CCTATATTTTTGCATACAATTCAAGATGGCAGATGGAAAGGCGAAAAGGT
CTATAGTCGTTTGAAAGAACACGACGATCTTACTAATCACTCCAGAAGAA
TATTGGTAATTTCCAAAGCACTTTGAAAAATTGACTGGATTACAGAGTGT
TTTTTTTTACCTGAAAATTCCTGTTGTCCACCCCCTATATAAAATTTTTT
TTTGGCTTGAAATCTAAAATTAAAGTAAATCAGCCTGACTCTGAATCCAG
TTATCTTGATTGATATAGGAGTTTTAGTCTATACTGTTTGTTATTCAATA
GACTATTGTGTTCTCCCAAACCACAATTTCAAGGCCAGTAAATATCTCAA
AACTATTGAAAATCTGTTCAAATTTTGATATTTTTTCATTTGATGTTATC
AATAAAAATCTCATTGGTTGTAACTTGTATCCATTTTAGCAACAAGCCAT
TTTAAGCTAATTTGGTTTGCAAAAAGTGCAAGTCTATAATTTAAACTAAT
AAACTGTCTGGAATCTGTGAGATCTTTGACTTGAGCAAAATAAATCTTCT
CAAAAATTTCAAAACTGCTTCTTTTTAGCAAGAAAAATAATCAGTAAAAT
TAAATTTAAAAAAAGGCAAGCTTTACTTAATGTTTGTAAAGGTTCTTTGA
CAAAAAACTTTCGAATTTTTTATCGGCATTGGGCCGATAAGCTTCAGACC
CCCTCCCCCTTGCTCTTATCAGCCAAAATTTTCGAAACCAATTTTTACAT
CTTCGAAAACACAATTTTTTCCAATCATGTCCGCCATTGCGTTGGTCTTG
CCTTCCCACCTGTCTTCGTTGAGTTTTTATCTATTTGCACCAACATTAAG
TTTGTTCATACCCGCATTGATATTGTTAATCAAAACGAAAGTTAAAAAGA
CCCGATGAAGTTGCAACATTTTGAAGGAAACGGCAGCACGCTGTCCAATT
AAAAAAAAGTTTTTTATCAAAGCTAATTCAAAACTGTATTTTTAAAGTTG
CGAATTTGTGCGCAAAGGTGAAAGCAAGTGAAATTGTATGCTTTCAGTTG
AGTTTGTGGACGAAATCAGAAAGAAATTGGTAGTTAGACCCCCCCCCACC
CCCTTATCAGCCCAATACCGATAAAAAATTTGAAAGTTTTTTTTGAGGAT
CCTTAAAACGTTGACCCAAATTTTATTGCAGTGATACTTTTCTGGAAATA
AAGGAAATGCTACCAGTCATTTTTCAGGCAAAAGCCCAATTATGGACTGA
AAAATCAAATATTTATGTTTTTGATTTACTTTGCCACATTTTCATTAGAA
ATAGAAAATCTAGCTAATTTTTTATATTCCTTCTCTAGTTGCAGTTTTCA
CCAGCAGTCATTTCAAAGTTTAATAAGAAAGGGGTTATGAAAGCTGATTG
CAGAAATGCTGATGAGAGAGCAGCTACTCCTGTCTGCAGTTTTCTATGGT
TGCAGGTGCAAAGCAGATTCCGTTCATCTCAACTAAATTTCTTTAATGCT
GTTATTACCATTATGAAAACCTGTTCAGTGCCTTAAGTTTGCTGATTCCT
GTTTTGATAATCCCTCCACAATAGTTTCCTGGTTTGAATGTGGGTGAACA
AGATTGATTGCAGTAAACTGCTGTCCAGTACTCAAACCACCATGTCTGGT
TGAAAGCAGTTTACAAGGTCTCTCTTCGACATCAAGCAGAAATAAGTTCA
AAATCCAAGCCGCCTTTTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTA
TTTCCAAACCAGTCCAGTTACAAGTGATGCGGTTGCTGCTTTAATTGCAC
TTTTACTACACTGGGTAAATACTGCTATCTTTAAACCTAACTGCAAAGGC
TGTCATTTTGGAATAATCGAATCAAGGTATTCAGGCTCTGCAAATTTTAG
GCTGAAAACATTGGGCACTGTACTAACTTAGGAGTGAGTCTGGCTTGATT
GGCTTGGGCCAATCGACTGTAGCTCGAATTAAACGAATCAAAACTATTTT
GGCTTTCCCCAGGCCTTGCCTATTTAATTGATACTTAAAAACTACTCCCT
AAAAGTTAAAACTAGACACTTGATATGTATTTTTGAGAAGATAGATTTTA
CTGCTTTATTTATCATTAACATTGAGAAAATTTTATGATTGAACTTTTAG
ATACTTCAAGAAATATGGAGATGTTGGAGACATTTACATCCCCAGAGACC
GGAATACACAGGAGTCACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAA
CGAGATGCTGAAGATGCAATGGATGGCATGGATGGAAAGGTAGTTCATAT
GACCTTATTTTTGCTGTCCTATAAAAGTTTCTTTATTNTTGATAATCCCT
CCACAATAGTTTCCTGGTTTGAATGTGGGTGAACAAGATTGATTGCAGTA
AACTGCTGTCCAGTACTCAAACCACCATGTCTGGTTGAAAGCAGTTTACA
AGGTCTCTCTTCGACATCAAGCAGAAATAAGTTCAAAATCCAAGCCGCCT
TTTGTGTTGGACTGCTGCTCCTGTCCATTTTTGTATTTCCAAACCAGTCC
AGTTACAAGTGATGCGGTTGCTGCTTTAATTGCACTTTTACTACACTGGG
TAAATACTGCTATCTTTAAACCTAACTGCAAAGGCTGTCATTTGGGAATA
ATCGAATCAAGGTATTCAGGCTCTGCAAATTTTAGGCTGAAAACATTGGA
CACTGTACTAACTTAGGAGTGAGTCTGGCTTGATTGGCTTGGGCCAATCG
ACTGTAGCTCGAATTAAACGAATCAAAACTATTTTGGCTTTCCTCAGGCC
TTGCCTATTTAATTGATACTTAAAAACTACTCCCTAAAAGTTAAAATTAG
ACACTTGATATGTATTTTTGAGAAGATAGATTTTACTGCTTTATTTATCA
TTAACATTGAGAAAATTTTATGATTAAACTTTTAGATACTTCAAGAAATA
TGGAGATGTTGGAGACATTTACATCCCCAGAGACCGGAATACACAGGAGT
CACGTGGTTTTGCTTTTGTACGCTTTTATGAAGAACGAGATGCTGAAGAT
GCAATGGATGGCATGGATGGAAAGGTAGTTCATATGACCTTATTTTTGCT
GTGCTATAAAAGTTTCTTTATTAATATTATCGTTAGCGGATGCATTTCCC
TCGATTTCTATAAAACCAATCAGTGGAGAAGTGCGACTCTTCTTGTAATG
GTTGATGTACATTTCTAACTTCTGCTTTAAGGTCATTGATGGACGTGAAA
TTCGAGTAGCCATGGCTAGGTACGGTCGACCAGCAAACCAATATGATCCA
AGACGACAAGGACGCAGTGGAGGGCGTGGTAGTCGTGATCACAGAGATCG
AGACAACCGTGACCGAGATCGAGATCGATCAAGACGATCCCCTCGCAGAA
GGTGAGCTTTTAATTCAGGGATACCCCTTCTATTCGATCATATTTTAAGT
GAAGCCCTCTGAAGCATTTTTAAAAAACTAAAGCTTCATACGTTTGACAA
TCATTAATTATTGCTATTTGATGAATGTTTGAAAAACCACTTGACAGGAA
TTTTCGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049706-exon-scaffold_165-1575043694:185366..185839 | TCONS_00049706-exon-scaffold_165-1575043694:185366..185839 | Clytia hemisphaerica | exon |
| TCONS_00049706-exon-scaffold_165-1575043694:180851..180989 | TCONS_00049706-exon-scaffold_165-1575043694:180851..180989 | Clytia hemisphaerica | exon |
| TCONS_00049706-exon-scaffold_165-1575043694:179583..179908 | TCONS_00049706-exon-scaffold_165-1575043694:179583..179908 | Clytia hemisphaerica | exon |
| TCONS_00049706-exon-scaffold_165-1510915933:185366..185839 | TCONS_00049706-exon-scaffold_165-1510915933:185366..185839 | Clytia hemisphaerica | exon |
| TCONS_00049706-exon-scaffold_165-1510915933:180851..180989 | TCONS_00049706-exon-scaffold_165-1510915933:180851..180989 | Clytia hemisphaerica | exon |
| TCONS_00049706-exon-scaffold_165-1510915933:179583..179908 | TCONS_00049706-exon-scaffold_165-1510915933:179583..179908 | Clytia hemisphaerica | exon |
| TCONS_00049706-exon-scaffold_165-1491911889:185366..185839 | TCONS_00049706-exon-scaffold_165-1491911889:185366..185839 | Clytia hemisphaerica | exon |
| TCONS_00049706-exon-scaffold_165-1491911889:180851..180989 | TCONS_00049706-exon-scaffold_165-1491911889:180851..180989 | Clytia hemisphaerica | exon |
| TCONS_00049706-exon-scaffold_165-1491911889:179583..179908 | TCONS_00049706-exon-scaffold_165-1491911889:179583..179908 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_165 | supercontig | scaffold_165:179583..185839 - |
Blast
BLAST of TCONS_00049706 vs. Swiss-Prot (Human)
Match: SRSF2 (Serine/arginine-rich splicing factor 2 OS=Homo sapiens GN=SRSF2 PE=1 SV=4) HSP 1 Score: 143.665 bits (361), Expect = 1.450e-40 Identity = 67/95 (70.53%), Postives = 80/95 (84.21%), Query Frame = 2
Query: 392 KGPPDINGMVSLKVDNLTYRTSMADLEKYFKKYGDVGDIYIPRDRNTQESRGFAFVRFYEERDAEDAMDGMDGKVIDGREIRVAMARYGRPANQY 676
+ PPD+ GM SLKVDNLTYRTS L + F+KYG VGD+YIPRDR T+ESRGFAFVRF+++RDAEDAMD MDG V+DGRE+RV MARYGRP + +
Sbjct: 5 RPPPDVEGMTSLKVDNLTYRTSPDTLRRVFEKYGRVGDVYIPRDRYTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGRPPDSH 99
The following BLAST results are available for this feature:
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