TCONS_00049541 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049541
Unique NameTCONS_00049541
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1059

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049541 ID=TCONS_00049541|Name=TCONS_00049541|organism=Clytia hemisphaerica|type=transcript|length=1059bp
TGAATACCGGCCGTGAAGTCAAAAGACTCGATGCTGTCGCTAGAAGTCCA
CTTTACACTCATCTGTCAGCCACATTGTCCGGTATCTCTACTATCCGGGC
GTTTGGATTACAAGACCGGGTAACCAATGATTTCCATGATTGCACAAACT
ACCAAGCGGAATCGTGGTTGATGTTCATTTCATCTGTTCGGTGGTTCGGA
ATGAGATTGGATTTTATTTCACTTGTGTATTCAATGGTTGCAATATTCTC
TCCCATTATTTTACTTGATTTATCTGGAGAGATGGACCCGAATATTGCCA
GTGTCAGCATAACATACGCATTGACTTTGAGTGGTTTATTCCAGTTCTGT
GTTCGACAAAGTGCTGAAGCTGAAAATCTTATGGTGTCGGTAGAACGATT
AATGGAATATGCCGACATTGAAAATGAACCAGACAACGGTGATTTGAAGG
CCGACAAGAATTGGCCGGAAAAAGGCCGGATTACCGCATCACACACGTCT
TTCCGTTATCACCAATCTTTGGATAATGTGTTGAAAAAAATCTCCTTTGT
TATCAACGGTAGAGAAAAGATTGGAGTTGTTGGGCGTACGGGAGCTGGTA
AAAGCACTCTTTTGAATTTGTTGTTCCGAATGGGTGTTACAGATGGGCGT
GTTATCATCGACGATGTAGATATATCACGATTAAAATTGAAAGACCTTCG
AAGTTCACTCTCTATTATCCCACAGGATCCGGTCTTGTTCAATGGTACAT
TGCGTAAAAATTTGGACCCTTTCTCCAAGTACACAGATGATCAAATATGG
CAAGCTTTGACTGAGGTTCAACTCTCTGAGACAGTCGGTGATCTTCCAAA
CAAATTGGAAACTGAAGTTGCGGAATCAGGTTCAAACTTCAGCGTGGGTG
AAAGACAATTATTGTGCTTAGCCCGTGCTCTGTTGAAACGAAACAAAATC
TTGGTTATTGATGAGGCTACAGCCAATGTTGATTTCGAAACCGATTCTTT
GATTCAGGAAACGATTCGTATGAAATTCCAAGATTGTACAGTATTAACCA
TCGCTCATC
Run BLAST on NCBI

transcript from alignment at scaffold_160:72439..87606-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049541 ID=TCONS_00049541|Name=TCONS_00049541|organism=Clytia hemisphaerica|type=transcript|length=15168bp|location=Sequence derived from alignment at scaffold_160:72439..87606- (Clytia hemisphaerica)
TGAATACCGGCCGTGAAGTCAAAAGACTCGATGCTGTCGGTAAGTTTCCC
CGATTTCCCGATAATGCTTGTTTTATTTCCCTCTGTTTTTAAATAAACTG
AGAACGTTTAGTATGAATACCGGCCGTGAAGTCAAAAGACTCGATGCTGT
CGGTAAGTTTCCCCGATTTCCTGATTTTGATTTTTTATTTTCCAGCGTTA
TTTTTTAAATCTGAGAACCTTCTGCTTAGTGCAAAGGCAGAGCTTTCGGT
CACGGTCTGCAAGGTCGAGGGTTAAATCCTATGTCGGGTTATATCAGAGA
CTTCGTATTTTGTTTACAAATTAGCACTTGATGTATCTCTGCTTGATCAT
CGGCAATTAAAGAGATGGATCAAGGGTAAGTTGATCAATCCAGTGAGCCC
TCCCTTATCAAGATAGCAATCGAAAGATGAGCCTTCAAGTTGCCTCTGAC
TGTGGTCACAGACTTACTTTTTTTCCCAAAATCTCGGCTATTGCTAGTTT
AATTCCAGATTTCTCTGAAAGTAAGCAAATTTTCCTCTCTCCCTGTTTAG
TACACTAGCCTGATAAAATCCAGATTTTCGTCCCGAAAACGCATGACGTT
ATAGTTTAACATTGCATAAATGAAACGAATAAATCTCATCTCCCTTAATA
CTCTTAGTAGCAGTAAGTTTGCGACCGCAGTCGAGGGCGACCCGCAGGCT
CCCTTGTCGTATAGCTGTCCACCTTCCCTGGATTTCTCCACTTACCCTTG
ATCCGACTCTTTAGTTGCTGAGCATCAAGCAGAGAGGCATCAAGTACCAT
TTTGGGAATCTTTGGTATGACCCAGCTGGGGTTCGAACCCGCAACCTTGC
GCACCGTAGCTGGATGCTCTACCTTCATGCTATGGTCGATTAATACTCTT
ACTCTTTTAGCTAGAAGTCCACTTTACACTCATCTGTCAGCCACATTGTC
CGGTATCTCTACTATCCGGGCGTTTGGATTACAAGACCGGGTAACCAATG
ATTTCCATGATTGCACAAACTACCAAGCGGAATCGTGGTTGATGTTCATT
TCATCTGTTCGGTGGTTCGGAATGAGATTGGATTTTATTTCACTTGTGTA
TTCAATGGTTGCAATATTCTCTCCCATTATTTTACTTGATTTATCTGGAG
GTAAGAATCAAATTCATATGTCGTCTATTTATTTTCGAAAAGTGTAAATT
TAGAAAGAGCCTAAGATATTTTAAAGAAAAAACCTTCATTACATAAGCAA
AAAAACCTGCTTTGAGGCCTAAAACGTTTCGAATTTGGAAAATGCATGAA
ATGGCTAGAATGGATTTAACGGGGATATGATTCGGCGAATGTCGACAGAA
GTAATTTTTGGCGGTAACATTTTTTTTCCGCTAAAATCTTTGTTTTAAGT
TACTCAAAACAAACAAGCTGAAGCTTGAACACGTAAATCGTTATATACAA
ATTGTACGAATTACAAGTAGTCTCCTTAAATTGTCTTTAACAGATATTTT
CTTTTCAAAATAAAACGCACTGATCTATAATCATACTCTCCCTTACATTC
TAGAGATGGACCCGAATATTGCCAGTGTCAGCATAACATACGCATTGACT
TTGAGTGGTTTATTCCAGTTCTGTGTTCGACAAAGTGCTGAAGCTGAAAA
TCTTGTAAGTTTTTGTCCTATTCTGTTGTTTTTTTTATCATTTACATTTT
CTATTTTTATCACTTTTAACGTGCGAACTCTTACTTTAACCAGTCGCAAA
CAGGGAACAACTCTCCTGCTTTTTCAGATATATTTAGTCTTCAAGAACAC
AGAACATTTCATCCTTAGGTTAACCTTTAACATACTAATATTGGTAGAAA
TAAACTTAACATCATTGTGCAATTACAATATCAGAGTCTAGCGTATTCGA
ACTTTTATTAAATCGAATCTTTCTATGATTCGAACTAAAATATTCGTCTC
GGCAGCTGAAAGTCTAATTCGATTTTCAATGGACCAAAAATCTTCTTCGA
ATAAAAGAACAGTTCGAAATACAGAAAGAGTCGAACAAAGAAAGATTTGA
ATTACAGAGGTTTCGAATTGAGAGAGAGTCACCCATATAATCTCAATGAA
CAAGATTCAATTTGGATTTTTTTAATCGAGATTTTTCTATCTCTAGATGG
TGTCGGTAGAACGATTAATGGAATATGCCGACATTGAAAATGAACCAGAC
AACGGTGATTTGAAGGCCGACAAGAATTGGCCGGAAAAAGGCCGGATTAC
CGCATCACACACGTCTTTCCGTTATCACCAATCTTTGGATAATGTGTTGA
AAAAAATCTCCTTTGTTATCAACGGTAGAGAAAAGGTAAGACCACGTGAC
CCGGCAAATTTCCAGGATTTGGAGCTGCTACCGTTTTTAATCAAAAGATT
GGGTTTTAGAATGTGCCTTAGGCTCGAAAAAAGCAGACAGGAGGTCTGGG
GCCTTGTAAACAGCCCAACCAACTGGTCCAGGACAGTCCTGGTGTGGTCT
ATGGGGCAAAGCNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTGC
GGAATTAAGTGCTATAATATCAAATATTTGAAGACATTTTTCACTAATTT
ACCTTTTTCCATAGCTAATTTTATTTTTCATAAAGATTGAGTTCCCAAAC
TCAATTAAAGATTCAGCTTCTGCTAGCGTTATCCGGTAGCAGAAAACCCC
TGGAAATATGCCTGGTGACTTGAAATAAAGCTGTTCTATTGGTTGATTTT
CTGACTGGCGTCAACGGTAGAGAAAAAGAGCCGATAGTAAGTTTAACAGT
CTAATATTCCTTCATCGCCGTATTCTTACCGAAATAAAGTTTTATTCCAC
GCTTCTAGATTGGAGTTGTTGGGCGTACGGGAGCTGGTAAAAGCACTCTT
TTGAATTTGTTGTTCCGAATGGGTGTTACAGATGGGCGTGTTATCATCGA
CGATGTAGATATATCACGATTAAAATTGAAAGACCTTCGAAGTTCACTCT
CTATTATCCCACAGGTGTGTAAAGTTATTGTTTACGCTTGTTAATTTTTG
GAAAATTTTTCCAACCAACCCGGGGGGGGGTTGTTTAGTAATTTTTAAAA
ATATTTTCAGCTGTCAAAGGGAAGGCCCCTTATTTTGGTCTAAATAGCCT
CATTTCAGCCTATATTTATCTTATTTTTGGGTTTTCAAAAGTACAATTTC
CAACCCCCGGCAATTAGGTCCCCTCCCCGTTTATTGAAATCTCGAAAAAT
TTCCAACCCCCCCCCCCCGTTTATTTGGAACCTAAGAGTACATTATGAGT
CTGGAATAGGATACAAGTTTATTGAATCTTGATTCTGGGAAATGCGGGAT
GTACAGTTGACGCTCTCATAAACGATGCTCTACCATTCAAAACGCTCCCT
TATTCGAAGAAAATCCAATTCGCCTTGAAAATCAAATTAGTGATCGTCAA
CTGTAGTGATCATCGTGTTGCATGGCACACAACGGTTTTTTTCGACGTTT
ATCTAACGTTCACAACGTCCATATAACGTTAGATGAACGTTGAAACAATG
CTGTGTGCCAGCTGGTTGTGTTGCATGGAAGCCTTTATCAAATTATGATT
ATTTATGATATTCTTTACCATTAAATGTTTTTTATAACAACATCCAAAAA
ATTTTGAAGCCTTTGGATGTTCTTAAAAAACTAATTTTCTTAACATGTTC
TTATTCTCACCATTTTGTGGGTATTTTTGACCATTTTCCTAAGAAATTTG
GCTTTTCAAGGTCCACAAGGTCTTAAAATGTTCTTGAACTTGTTCTCAAT
GTTTTAGCCATCAAAGCCTTATGTTCTTATAATTTTATTCTTATAAAAAC
TATTTCATATTCGTCAGGATCCGGTCTTGTTCAATGGTACATTGCGTAAA
AATTTGGACCCTTTCTCCAAGTACACAGATGATCAAATATGGCAAGCTTT
GACTGAGGTAGGTTTCAGGTTTTTATCTACTACAATACACCTATCTAACC
TTTAAAATGTGAGTAGACTGGGTTCGAGGTTACCAGGAAGATATATGACC
ACAAATATATTTTATAAAACACTAGATAGAGCTTTTCCTATCCTATTTGA
AGCAAAATAATCCGCCATCTTGAATGAAGTGACGTCATAATTTCGCTTGT
GTGATCCTTGAAATTTTGAAGTCATTGCTATGTCCAAAAAGTTTCAACAG
CGAAAAACCAAGGCTACTACTGTGATCTACTTTCAGCAAAGATGGCGTAC
TATTTTGCTTCACCTGTCTTGGCTTGGAAAAGATAGAGCAGCTCTATTTA
GTGTTTCATATAAGATATCTGTGGGTATGACGTCTGAATGTCTGAAGTCG
TTCCATTTTCATCCTTAAATACAAAAAAAAAAGAAATCTGACGTCATTTC
CTTGTATATCAATTACCTTTAAAGCTGACCGCGCCGCTAAGAGTTGATAG
GTGTAAAGACCTTTTCATAAATTATTTTGACTGACTCTTTTTCGAAAAAT
TACCAATTTGATTAACCCTTTCCGGACGCACGGGCCACTGATGGGTGGCC
CATGAATCGTGTTCCTATATGACGGACGGGCCACCGGGTGGCCCATAGCT
TTGTAAAAGATTTTTTTTCGCGCCAAAATACAATAACATGGTTTTGAATA
ATGATTTTAAGATAAATTTCCCGTAACCTGCAAAAACCGCTTTTTCGATA
TCTTGTTTACAACTAGAATTATAAATTTTCAATGTTTGTTGTAAATTTAC
TCAGGCTAAATCTGTAAGGGAAAAATTGCTCAAAAATTTGGACAAAAAAT
CACTTTACTCAGATTCTAAATCATATTCAAAGTTCAAGACGTAAAGCATC
AAATGCCTTTTACTCTATTTCTTTATTCAAAGTCAAAAATTTTGCTGCTC
CGAAAAATCGGTCACCTGACCAGGTGTCAGCCATATTTCAAAATTTTTTT
TTGGTATTTCAAAACCCATATTACATGTGAAAAAATGAGGTTTTACTTTT
CGTGATATCTTTTATCAATCACTTTCTATTGCAATTTTAGTGAAGCCAGT
CAAAAATCAAATTTTTGTTCGCGTCGTATAGCCGTGAAATCATGCGTCTG
GAAAGGGTTAAACCCCTTGAGTCGTCTTCAAGTGTTACTTTTATAAATAG
AGTACTGTAGACTGAACTTCTCTTGGAATCAATTATGATAGCAATTATCA
GAAAGAGGTAAACGTTGCTCGTGACATAGTTTGTACAAAGCTCTCTTCAC
TGATGAGGTTAGGATTTTTTTTTTCATCATAAGAACCGGCTTCCCCAAAA
TAAAATAGGGTTTTTCCGCCTGAAAACAAAATGTTAAAAACAGTTTTTAA
GCAAATGAAAAGTTCTAATAATAAGTTGATTTTTAGAAAATAAGAAATGT
TACGTCAACATAAGAAAAATGTTGGGGACGAAAAGTGGGATTTATCGGGT
ATTACGAATCATAATAGCGGTTACAATGAAGCTTTGAGCTGCTTTGAGCG
ACACGCAAGAAAACTTGAATACCCAGCTAAAAGGTTTACCATCCCATGAA
TCTAAAGAATTAACGGTTAAACTATTATATTATTAAATTAACGGAATTCG
CTTTTCGGTCTATATAAGGTCTTCAGCAAAATAATGAGATAATTAATTCG
ATTTACATTTTCATTATCATTCTATGAAATAAACATTTGTCAGGTTGAAG
AAATTATTTAGTTATTTATCATCAATAAAGTCAATAGTTTCTCTACCTTA
CTCAGGGAACAATTTCGGGTAATTAGACGAATTGCCTCACAAATTTGTCA
AATGCGCCAAAATCTCTTTCCACTAATTCGAATTTTTTGGTCATTCGCCA
AAATTAATTCTCACTAAATTTAACAAAGTAACTTGGCATTCTTTCCCTTA
AAATATCTTTTCTAATAATTAATATATTTTGATCTCGTCTCTTTGCAGTT
TGAAGAATATAAAATGGGAGCCATTAGTAAATCGAGCTCCAACTTTCATA
ACTTTTTACCGTCCTCAACACGGTTAGCTTCAAATGGAATAATCAGAAAC
CCTCACAAAACTATCATTAAAAAAATCACTCCATTTCACAATAAACACTA
CAATTTATCATAGTTTCATCCTCTTGTTTTTAATGAGCGTCGATACTCAA
TAGGAAATCTCGCAAACTTAAGCCTTATTTCTAGTTTAGTATAGTTTTTC
AATGGAGTTCAAATTTCAGGGTATTCTTTTTAACGGGGACCATTTCTTAG
TCAATTTTTCCATTGGGTAGAGGGTCACAATGTGTCATACTTCTCACAGA
CGCCTCCTAAACGCCCGTGGGCTTGAGATGGAACGGAGATGGGTGACATT
GAGAATTGCTGTATCACATCTACTGCAACTATAATGGCGGATTCCTTGAT
CTTGGGTGTTGCACCCGGCTTGATCTCGCGCATTGCATCTTTGACATCTG
TACCGCCATCGGGAGGATACATTTCAGCTTGAGGTTTACGGCGATACTCG
TTCCCATTGGGTAGAGGGTCACTCTGTGTCTTGAACATTGGGGCATACTT
CTCACAGACGCCTCCTAAATGCCCGTGAGCTTGAGATGGAACGGAGATGG
GTGACATTGAGAATTGCTGTGTCACATCTACTGCAACCATAATGGCGGAT
TCCTTGATCTTGGGTGGTGCACCCGGGATGATATCGGGCATTGCATCTTT
GACATCTGTTCCGCCATTGGGAGNCAGACGCCTCCTAAACGCCCGTGGGC
TTGAGATGGAACGGAGATGGGTGACATTGAGAATTGCTGTATCACATCTA
CCGCAACTATAATGGCGGATTCCTTGATCTTGGGTGTTGCACCCGGCTTG
ATATCGGGCATTGCATCTTTGACATCTGTACCGCCATCGGGAGGATACAT
TTCAGCTTGAGGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCAC
AATGTGTCATACTTCTCACAGACGCCTCCTAAACGCCCGTGGGCTTGAGA
TGGAACGGAGATGGGTGACATTGAGAATTGCTGTATCACATCTACCGCAA
CTATAATGGCGGATTCCTTGATCTTGGGTGTTGCACCCGGCTTGATATCG
GGCATTGCATCTTTGACATCTGTACCGCCATCGGGAGGATACATTTCAGC
TTGAGGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACAATGTG
TCATACTTCTCACAGACGCCTCCTAAACGCCCGTGGGCTTGAGATGGAAC
GGAGATGGGTGACATTGAGAATTGCTGTATCACATCTACCGCAACTATAA
TGGCGGATTCCTTGATCTTGGGTGTTGCACCCGGCTTGATATCGGGCATT
GCATCTTTGACATCTGTACCGCCATCGGGAGGATACATTTCAGCTTGAGG
TTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACAATGTGTCATAC
TTCTCACAGACGCCTCCTAAACGCCCGTGGGCTTGAGATGGAACGGAGAT
GGGTGACATTGAGAATTGCTGTATCACATCTACTGCAACTATAATGGCGG
ATTCCTTGATCTTGGGTGTTGCACCCGGCTTGATCTCGCGCATTGCATCT
TTGACATCTGTACCGCCATCGGGAGGATACATTTCAGCTTGAGGTTTACG
GCGATACTCGTTCCCATTGGGTAGAGGGTCACTCTGTGTCTTGAACATTG
GGGCATACTTCTCACAGACGCCTCCTAAATGCCCGTGAGCTTGAGATGGA
ACGGAGATGGGTGACATTGAGAATTGCTGTGTCACATCTACTGCAACCAT
AATGGCGGATTCCTTGATCTTGGGTGGTGCACCCGGGATGATATCGGGCA
TTGCATCTTTGACATCTGTTCCGCCATTGGGAGGATAATTCTCAGCTAGA
GGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACTCTGTGTCTT
GAACATTGGGGCATACTTCTCACAGACGCCTCCTAAACGCCCGTGAGCTT
GAGATGGAACGGAGATGGGTGACATTGAGAATTGCTGCATCACATCTACT
GCAACCATAATGGCGGATTCCTTGATCTTGGGTGGTGCACCCGGCTTGAT
CTCGGGCATTGCATCTTTGACATCTGTTCCGCCATTGGGAGAATAATTCT
CAGCTAGAGGTTTACGGCGATACTCGTTCCCATTGGGTAGAGGGTCACTC
TGTGTCTTGAACATTGGGGCATACTTCTCACAGACGCCTCCTAAACGCCC
GTGAGCTTTAGATGGAACGGAGATGGGTGACATTGAGAATTGCTGTATCA
CATCTACTGCAACCATAATGGCGGATTCCCTGATCTTGGGTGGTGCACCC
GGCTTGATCTCGGGCATTGCATCTTTGACATCTGTTCCGCCATTGGGAGG
ATAATTCTCAGCTTGAGGTTTACGGCGATACTCGTTCCCAGCACCAACAT
GTTTCATACGTTTCGCATTGAAGTACTCTCTTGTGTTCTGCCGTGGCCGT
AACAACATAACGTAACATTTTCTACCGTACATCAAAAATAGAGTGACATA
ACAATTGATGGTTAGGATAATGGCTCCTAGGAGTTCCTTATCGCTGTGTA
GACGACGGAAATAGGAAATCGGGAAACTAACGCTGAAGGAAACTGACGTG
ATCAAGATAGTGTAGAACAACGACATTGCTTCATTCATGATGTCAGGTAG
TTTACGGCAACGGTACGCTTGGACAGAGCACGTCAGCTGGAAGACGGTTA
AGAGTAGAATCTGGATATACTGATGAATCAGAGTATTGCAATGGTTGAAT
CTAACCATAAATAGATCATCAGTGTACGAAACCATATTTGGTGAAATTTG
TAAGGAAGTTATAGCTAGACAGCCATTGGTCAATATTAACAGTACAAAGA
CTGTAAACGTTTGGAGTACCATTGTTCGTTTAATTTCCGTTGCTTTCAGT
TTGATTTTAGAAGCGAAAGCTTTGACAAGTTTCTGCGATTTAGTATAGAG
ACAGGAGACGTGTAGAGTGTAGAGGATGCTTAGAATCAAAATTCGTCCTA
TGCATAATTCAATGTTGAGATATGGTATTATATGGAGACATCCCGTGAAA
AAGAAAATTGAAAAGATACTTCCAAGATGTAAGAACGATAGGAATTTGTC
TGACGAACGCACTATCGGTGTATTGCCACAAACAAAATTAACATAATATG
GCTAGTACACAACCTAGTCCTGACGTAGTACATAAAATCCAACGTTGTTC
ATCGTCAAACAGAAGCGGTTTGTTTGTATAAGGGTCAACGCAAGCTGTTC
GTTTGCCGTTATCTATACTGAGAACACCAGTGCAAGGCGTGCAAGATCCA
TCACCCGTACCAAGTTTTATTGTATTTTCCGGACAAAGCTCACATCTTGT
GCGATGTTCTTCGTCGAGTAATGTATTGGGGCTATTCACAAGACCGTACT
TCGGTTGGAATCCAGGCAAACAATTTGTAGACGGACATTTAAGCTCAGGG
AAGAAAACATTTTCCAAGTACTGATTGGTTCTTTCGTTAGTATTGACTGA
AACCTCTTCGAAAATATAATTGAGAAGCGGTAACGTATATTGGCGTTTTA
AGATATTTGTACTTTCGCTGTAAACTTGCGGTAATAGACTATGAATACTG
TCTTCAGGATTGCGATTTAGTGCATCCCAACTTAAGATTCGTAAAAGACG
GCGTATATAATCTAACATCATAACGCGTTGCTCATCTTGGGATTGCAATT
CGTGGAGATGTTGTCGCCGTCTGTAGAACATCTCGAGCACGTTATAATTG
TCACCATGTGCCGCTTCCATTTTAATGTCTTGAAAAATAATGGTTCGATT
TTTAAGGGGTTTAATTTCCTTTTTGTATTTGAACAAAGAAGCAAGTCCAA
ACAGGGTTGAATCTATGTAAGAATCCCCAAAGAAAATAACAACGGAATTA
TCGACTCCAGGTGACGTTAGAAGAGGCATGATTTTGTTGCTTAAGAAAAT
ATCAGGGAAATCCTGAAAATTTTCCTCAATAAAATTTTTGTCATATTCAA
GAAGTAAGTTAATTGTTTTCTTTTTGAGACAATATTTCTTCGTGTTCTTC
AAGTGATCATAAGTGTTCTGAAAATATTCTTCATACCGTGTTATGGGTTC
ATTGCTTTTGTTTGATGATTGAACATTAACAAAAGTGACGTCATATAAAC
CGAATCGGTTTAAAAAATCCGTCACTTGTAGAGTGTAATCCGTTAGCATG
AAAATTGGGTAACGTTCGTCGCATCCCTGTGGGATACACAATCGAGCGAT
GAGTGGATAAAGACTGCTGACAATGTCTTGTATGATTTTTGTCATTTCTT
CAGTCACGTGAGCGACTATGAGAAAAATGTTTTGTTTGCGATAAATAGGA
GAACGGGTTCTATTCAAAAGTGACCCACTTTTCGATTCCTCAGCCTGAGT
AGTATTCCCTGTTTCAATACCCTTGACTGGCGGAAAGAAATATTTTTGGT
CCAGAAACAATTCTGTTAGAAGTTTGATCAAAGTGTCCGTGTTATTACAA
ACGCTATAAGGAATGAAAGTGTTAGCTATCATGTTACTCAGCTCTTCACG
AAAATCACTGATCATACGTCGAGACTTCAGATTAAACTCGTTGTCGGTGT
CAGAATTCGACTGACGTCCGTCGCCGTCGGGACATGCGGAAAAAAAGCCG
ATGATCAGAAATTGCTTTAAAATATGATCTTGTGCTCCACTTTCTTGTAC
TGGCGATCTGCTTGTAACAAACATCAGCGATTGGAAAAATATAAGAATGA
AACACATCATTACCACATATTGAACCATTGTCACCATCATTCAACAGCTT
ACGTTGATATGTGCGTTAAGGTTAAAGTTACACGTCTTCACTCCTTTAAC
TCTAACTTCACTCCTTACGAGAGCTGGACCAATGAGAAGCACTCGGTGGG
CGTTTTAGGGCCGTAGATAGTGAATCGTTAGCTTCCTTAAAACCTATCTG
GTGAGATATACTAGCAATCTTTAATAAATTTTTATGATAGCCGTAGATTT
GATTTCCAATCACAAACTGTCCGATCAAAGTCACATTATTCAAGAAATTA
CAAAAGTCTTTGTTTTTATACCTCTGATATCAGCCACTGAAACAAGCTTA
TGTAGCTTATAAGCCCTACCCTAGCTGTTTTCTTACAACATTTATAATCT
CGTTAGTAAATCTATAAATATAACTATGTTATGAGTAATGGCTTCAGCTT
CAGTATTGAATCATATGAAATGGACATTGATTTGATGTATATCCTCGCGG
ATTTTCTTGTAAATATAAACATTCTAAATCTCTTTTCAGGCTATTCCTCA
AAGATCCTTATCAAAAAGACGTATGATAAAGATCATTTAATAAATCTTCT
CTATCACATTATTGGAAATCTTATTCGTTAAACTGTCAATTGCTGCAACT
CGAGAGGTTCAAAAAGGGCGTTTTTTTTGTTTTTTTTTTTACGATAATCG
GTTCTTTCGTTGTCTTTTGTTTAGTTCGTGCTCTAAAAAGTGGTTTTAGT
CTTGGTTTTAGTGGCTATTTTGAGATTTTTCCAATATAAGATTGCGGTTT
TACAATAATTCCCAGATCATAAGAAATTCAACAAGTTGAAGGTGATAAAT
ATCTAGTATAGGGCCGATCCCCTTTCCATTCTTTTTTGAACCTACCTCGG
AGGTACTTTAATTTAACTTTTGTTTGTTCGTCCGTTCGTCTGTTACCAGC
TTTTAGGAATGGCCCATTATTTTTTTCTGATTTCTTGCATAATAATGCAA
AATGACAGTACCCAAAAAGTTACGATTTTCAAAAAAATATTTTTTGGGCA
AATTTGAACCAAAATAAAAACTGCCTAAAAATGGGGTTTTTCTAACTTCT
TGCATAAAGATAAAGGGCAAGTCTCTCTAAGTCGTTTTTTTCCAGGAATT
TTTTTTTTGGCCGTCAAAATCTTATTTTGGGAAATTCCCATGTTTTGTCA
TTTTTAAAATGAGCATTTCTCGTGATTTTCATGGTATTTTTTTCTGATTT
TTTTCACAGTGATTTAAAATAGTAATCTTTGAAATCTGAGGGAGCCCGAT
GTTCGAAAAAAATCGTTATTTAGTTTTTCCTTATTTTTCACACAGTGATG
CGAAATTGTAATCCTTAAAATGTAAGACTTCAAGATTTTTTGAAAGAAAA
AGTTGTAGCCGAATTTGGGCCAAATTTTGGATTTGTGGAAATTGCTTCAT
TAGATTTTTTCTTCATTAGAAGTATCTTAACATGAAAGAAAGGATTGTTT
TTCTTTCTGCTCAAAACTTAGTATGGCTTCTTACTTCTTACTTCTAAAAC
ATCGGGAAGCCCAGTGTGAAACAAGCTTCATCATGTTTTTCAAGCTCACG
CATCTCTATGCTACGATGTTATCTTTTCGTCTTTTTCGTTCGAACATTTT
CATCTTCATTCAGCATGTTTCCGACTATCTATCTCAGGTAGGTCCATTCA
ACATGATGCTTGTTTGTGTCAAAATAAGATTAAAAGTCTTGTTGCAAGTT
TAGAAGACGAAAAGAACTTTCCGTTTATCTTTTTAAGTCATCAAAACTAA
CAAGAAAAATATCAGCTTTGTGTGAAGTGTGCACTGCGTTAATCCTCTTT
TCTTATCTTCCTTACTTCAAATAGTTTTAATGTAGTCTAAAGATCACCAG
AGCTTTGAATTTTTGATACTCTAAAATGTCCTTAGGTGATAAACTAGTTC
CCTAACCCGCTTGAAGCACAAATGCCTCAGCTGCTGTACCAATTAACTTC
CACAACGAAATTAGTTTCTACACTCTAAAGTCAAAGTGCTTTGTATCTCA
TTTAAAAATAAAATTCTTAAACTCTCTCTTGACATTCTTGATACACGAAA
AATCGTGTTCCTGTTTTTCTATTTCTAAATTGTTAGTTAACTTATCGGCC
AAAACCTAGTCGGCCTTAATTTTAGTCGGCCCTAATTTTAGTCACCTCGT
CAAAATTTAGTCACTAAGGGCCGACTAACAGTTAAGTTTTGGCCATTTCT
AAATTTTTAGTCGGCCCAGATTTTTGTTGGTCCTAATTTTTAGTCGGCCC
TAATTTTAGTCACCAAGCCAAAATTTAGTCACTTAGGGCCGACTAAGTTT
TGGCTGATACCCTATAACTTGCACTTGACAATGATCTGAAAATTCAATAA
ATGCCCTTTGTAAACGAAGTAATACGAAGTAATAGTCTGTCTGTCCGTCT
GTCTCTGTTAAATTCAGTTGAACTACAATGTGACAATGTCTATCTGTTTG
TCTGTCTGTCTGTCTGTCTGTCTGTCTGACTTTTTGTCTGTCTGTCTCTA
TGTTACTAAGTCTGTCTTTCACAAAGTCTTTAGGGCAGTCTGCAGACGAA
TTTCTAATTTTTGCTGAAATTTGGCCTTCAAATAGTTGGAAAAATACGGG
CTCAGGACGTTGCGCACGTTTAAAATTAAAAGGCAAAAAAATTTCTCCAA
CCTCACATAAATATTTACTCTTAGGTGCCAAATAAACGGGCCCCCCGCTT
GTTAATTTTTCGATTTTTTTCCAACCCCCCCCCCCCGGACCTTATTAGGT
CCGTTTATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCT
TGTTTTACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGG
TTATTTTAAGGTCCATTTTCCAACCCCCCCCCCCGGACCTTATTAGGTCC
GTTTATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTG
TTTTACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTT
ATTTTAAGGTCCATTTTCCAACCCCCCCCCCCGGACCTTATTAGGTCCGT
TTATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTT
TTACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTTAT
TTTAAGGTCCATTTTCCAACCCCCCCCCCCGGACCTTATTAGGTCCGTTT
ATTAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTT
ACTCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTTATTT
TAAGGTCCATTTTCCAACCCCCCCCCCCGGACCTTATTAGGTCCGTTTAT
TAATTTTTGAAAAAATTCCCAGCTACCAAAAGGAAAGTTCCTTGTTTTAC
TCTAAAAAGCCTCAATCTAGTCTATTTTGACCCTTTTTAGGGTTATTTTA
AGGTCCATTTTCCAACCCCCCCCCCCGGTAATTAGGTTCCCCCCGAAAAA
ATTTTCCAACCCCCCCGTTTATTCGAACCCCCCCCCCGTTTATTTGGCAC
CTAAGAGTAGTAATTTCCAATCCTATGATTTTTATCCTTTAAGTGCATTT
GTTTATTTTAGGTTCAACTCTCTGAGACAGTCGGTGATCTTCCAAACAAA
TTGGAAACTGAAGTTGCGGAATCAGGTTCAAACTTCAGCGTGGGTGAAAG
ACAATTATTGTGCTTAGCCCGTGCTCTGTTGAAACGAAACAAAATCTTGG
TTATTGATGAGGCTACAGCCAATGTTGATTTCGAGTAAGAGATCTATATA
ATCTGATTTGAGTAGAAGAAAACATTTGTGAGTCGAAAAGAATTTTACGG
ATTTTTGGGATTTCCCTGAAGTTTTTTTTAGGTTATGAGCATCCTTCAAG
ACTTTTCCAAAAAAATTTGTACCCCTTATGTTGAAGAGGTCTTTTTTGGA
AAAGGTGACCCCTGGAATTTTTGGGTTTTCAACCTCATTTAATTGACCAA
CCTGGATTTTTACACTCGAAAAACTAAGGATGTATTAGACCTTCCTGAAA
GTCACACATCCTCAACTGGGGGTACAAACTATTTCTGGAATAATTGACAC
CCAAAATTCTATTTAACAATATTTTCCCCACCATGTTCTGTTTTTAGAAC
CGATTCTTTGATTCAGGAAACGATTCGTATGAAATTCCAAGATTGTACAG
TATTAACCATCGCTCATC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031424XLOC_031424Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049541-exon-scaffold_160-1575043694:87568..87606TCONS_00049541-exon-scaffold_160-1575043694:87568..87606Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1575043694:86457..86696TCONS_00049541-exon-scaffold_160-1575043694:86457..86696Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1575043694:85953..86053TCONS_00049541-exon-scaffold_160-1575043694:85953..86053Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1575043694:85272..85460TCONS_00049541-exon-scaffold_160-1575043694:85272..85460Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1575043694:84493..84648TCONS_00049541-exon-scaffold_160-1575043694:84493..84648Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1575043694:83550..83639TCONS_00049541-exon-scaffold_160-1575043694:83550..83639Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1575043694:72873..73045TCONS_00049541-exon-scaffold_160-1575043694:72873..73045Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1575043694:72439..72509TCONS_00049541-exon-scaffold_160-1575043694:72439..72509Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1510915933:87568..87606TCONS_00049541-exon-scaffold_160-1510915933:87568..87606Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1510915933:86457..86696TCONS_00049541-exon-scaffold_160-1510915933:86457..86696Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1510915933:85953..86053TCONS_00049541-exon-scaffold_160-1510915933:85953..86053Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1510915933:85272..85460TCONS_00049541-exon-scaffold_160-1510915933:85272..85460Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1510915933:84493..84648TCONS_00049541-exon-scaffold_160-1510915933:84493..84648Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1510915933:83550..83639TCONS_00049541-exon-scaffold_160-1510915933:83550..83639Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1510915933:72873..73045TCONS_00049541-exon-scaffold_160-1510915933:72873..73045Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1510915933:72439..72509TCONS_00049541-exon-scaffold_160-1510915933:72439..72509Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1491911889:87568..87606TCONS_00049541-exon-scaffold_160-1491911889:87568..87606Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1491911889:86457..86696TCONS_00049541-exon-scaffold_160-1491911889:86457..86696Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1491911889:85953..86053TCONS_00049541-exon-scaffold_160-1491911889:85953..86053Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1491911889:85272..85460TCONS_00049541-exon-scaffold_160-1491911889:85272..85460Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1491911889:84493..84648TCONS_00049541-exon-scaffold_160-1491911889:84493..84648Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1491911889:83550..83639TCONS_00049541-exon-scaffold_160-1491911889:83550..83639Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1491911889:72873..73045TCONS_00049541-exon-scaffold_160-1491911889:72873..73045Clytia hemisphaericaexon
TCONS_00049541-exon-scaffold_160-1491911889:72439..72509TCONS_00049541-exon-scaffold_160-1491911889:72439..72509Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:72439..87606 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
2.02649	0.0289646	0.813687	1.05238e-06	3.75806e-06	1.11337e-06	1.77258e-06	3.23245e-07	5.96758e-08	0.0110703	2.50576	0.903236	2.63572	3.47946e-08	2.69392	4.31596	1.77106	2.60187	1.05411	3.67427e-07	1.44553	1.11206e-06	2.15435	1.40809	8.13178e-07	0.190211	1.55379e-07	4.20037e-07	1.77625	1.57287
Blast
[Close]
BLAST of TCONS_00049541 vs. Swiss-Prot (Human)
Match: MRP4 (Multidrug resistance-associated protein 4 OS=Homo sapiens GN=ABCC4 PE=1 SV=3)

HSP 1 Score: 365.54 bits (937), Expect = 5.872e-115
Identity = 178/352 (50.57%), Postives = 257/352 (73.01%), Query Frame = 3 
Query:    6 TGREVKRLDAVARSPLYTHLSATLSGISTIRAFGLQDRVTNDFHDCTNYQAESWLMFISSVRWFGMRLDFISLVYSMVAIFSPIILLDLSGEMDPNIASVSITYALTLSGLFQFCVRQSAEAENLMVSVERLMEYADIENE-PDNGDLKADKNWPEKGRITASHTSFRYHQSLDNVLKKISFVINGREKIGVVGRTGAGKSTLLNLLFRMGVTDGRVIIDDVDIXXXXXXXXXXXXXIIPQDPVLFNGTLRKNLDPFSKYTDDQIWQALTEVQLSETVGDLPNKLETEVAESGSNFSVGERQLLCLARALLKRNKILVIDEATANVDFETDSLIQETIRMKFQDCTVLTIAH 1058
            T R+VKRL++  RSP+++HLS++L G+ TIRA+  ++R    F    +  +E+W +F+++ RWF +RLD I  ++ ++  F  +IL   +  +D     ++++YALTL G+FQ+CVRQSAE EN+M+SVER++EY D+E E P     +    WP +G I   + +F Y      VLK ++ +I  +EK+G+VGRTGAGKS+L++ LFR+   +G++ ID +  + + L DLR  +SIIPQ+PVLF GT+RKNLDPF+++TD+++W AL EVQL ET+ DLP K++TE+AESGSNFSVG+RQL+CLARA+L++N+IL+IDEATANVD  TD LIQ+ IR KF  CTVLTIAH
Sbjct:  885 TSRDVKRLESTTRSPVFSHLSSSLQGLWTIRAYKAEERCQELFDAHQDLHSEAWFLFLTTSRWFAVRLDAICAMFVIIVAFGSLIL---AKTLDAGQVGLALSYALTLMGMFQWCVRQSAEVENMMISVERVIEYTDLEKEAPWEYQKRPPPAWPHEGVIIFDNVNFMYSPGGPLVLKHLTALIKSQEKVGIVGRTGAGKSSLISALFRLSEPEGKIWIDKILTTEIGLHDLRKKMSIIPQEPVLFTGTMRKNLDPFNEHTDEELWNALQEVQLKETIEDLPGKMDTELAESGSNFSVGQRQLVCLARAILRKNQILIIDEATANVDPRTDELIQKKIREKFAHCTVLTIAH 1233
The following BLAST results are available for this feature:
BLAST of TCONS_00049541 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
MRP45.872e-11550.57Multidrug resistance-associated protein 4 OS=Homo ... [more]
back to top