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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049535 ID=TCONS_00049535|Name=TCONS_00049535|organism=Clytia hemisphaerica|type=transcript|length=1351bp
TTTATGCTTCTTATATGCATCaaggaagaagaaaaagtttcttaataaac
attgagtttcatgtatgaaataaaggtccaaACCAAATAATTTGATTTCG
AATTTTTCTTCAACCGATGGGGagggggtgaatgaaaaagtacgcactta
ccagggggtatagccatttgcgtacagggggaggttttcaacattttcaa
cagcataccttaagtggataaattttggcggggattaaatttggcgaatt
aaATCCtcaccaaaatttccaaattcagcAATTCGCCAAAtaaaatcccc
gccaaatttaacaaaatgagaattatgtgaaaagtCATAACtgtttagta
tatttttgagtaattttcacccatttcagtgtgacaatATTTCCAATTCG
CGAAATAAAATCCTCGCCAAATTTTACTaaattgatctatcgccaaatta
aatccctgccaaaaatcgtattttggccaatcgccaaattaaatccacgc
caaaatttatccacttaaggtatgtaCTATCAGGTACTATGTGGACGACC
CCTGGAATAGAAGTTTTAGTAGCTGAAAATTACCAACTAAAACCTTAATT
TTACACCcgaaaaagggtcaaaattttcatttttcgctcaaatgtaaaat
gtaatattttcaaaagtaatCATACAATTTGACTGATTTTGGTCTTATTT
GAAGCCAGACTATATAAGGAATAATTTTTATATTGCCGCAccatttttta
accaaaatgttGGACGTGCGATagaaaaattgcgaaattttaTGAGGTTT
TTGAAGGATAACAAGAAAATAGATTCATATGGTGTATGCTTAGTTTTTCT
TGCACTTTATTACTGCAATATTACAGTTTAAATTCCTAACCATTGTTtcc
ttttttccttttattcttgaattagaactaaTATAGTAATAACAACTTTT
ATGATTGATGGGGGGCAGAGAGATTTTTGGTGGCAAGATGTGGAAAATGA
GAAACAGACCCTGATGGGTACTATGGGTAATTGGGCCTTTGGTATAGATT
TCTACAAGGTAGTATTTAGTTAGAGAGTTGGGAATGTTATTCACCTGATG
GACAATTGTAAAAACTTCACTTTATCTACAACGATTCTAATAGATTGATA
CCAATGAGGAAGAAGTAGACGAACCAGTGTCTGTCCGATCGTTTGCTTGC
CAAACCGAGTTATCTTTTGCTGTTTCGAAATCAGAGGTCACCCGAAGTTT
TGTTTATGTCAGCTGGCCAAGTGGATCCAGAATTACAGAGGTTGACGGTG
AATTTTCTccaaccattttcaaaagtacCCGAAAGGAAGACCTCTTAGGC
T Run BLAST on NCBI transcript from alignment at scaffold_160:55769..58769- Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049535 ID=TCONS_00049535|Name=TCONS_00049535|organism=Clytia hemisphaerica|type=transcript|length=3001bp|location=Sequence derived from alignment at scaffold_160:55769..58769- (Clytia hemisphaerica)
TTTATGCTTCTTATATGCATCAAGGAAGAAGAAAAAGTTTCTTAATAAAC
ATTGAGTTTCATGTATGAAATAAAGGTCCAAACCAAATAATTTGATTTCG
AATTTTTCTTCAACCGATGGGGAGGGGGTGAATGAAAAAGTACGCACTTA
CCAGGGGGTATAGCCATTTGCGTACAGGGGGAGGTTTTCAACATTTTCAA
CAGCATACCTTAAGTGGATAAATTTTGGCGGGGATTAAATTTGGCGAATT
AAATCCTCACCAAAATTTCCAAATTCAGCAATTCGCCAAATAAAATCCCC
GCCAAATTTAACAAAATGAGAATTATGTGAAAAGTCATAACTGTTTAGTA
TATTTTTGAGTAATTTTCACCCATTTCAGTGTGACAATATTTCCAATTCG
CGAAATAAAATCCTCGCCAAATTTTACTAAATTGATCTATCGCCAAATTA
AATCCCTGCCAAAAATCGTATTTTGGCCAATCGCCAAATTAAATCCACGC
CAAAATTTATCCACTTAAGGTATGTACTATCAGGTACTATGTGGACGACC
CCTGGAATAGAAGTTTTAGTAGCTGAAAATTACCAACTAAAACCTTAATT
TTACACCCGAAAAAGGGTCAAAATTTTCATTTTTCGCTCAAATGTAAAAT
GTAATATTTTCAAAAGTAATCATACAATTTGACTGATTTTGGTCTTATTT
GAAGCCAGACTATATAAGGAATAATTTTTATATTGCCGCACCATTTTTTA
ACCAAAATGTTGGACGTGCGATAGAAAAATTGCGAAATTTTATGAGGTTT
TTGAAGGATAACAAGAAAATAGATTCATATGGTGTATGCTTAGTTTTTCT
TGCACTTTATTACTGCAATATTACAGTTTAAATTCCTAACCATTGTTTCC
TTTTTTCCTTTTATTCTTGAATTAGAACTAATATAGTAATAACAACTTTT
ATGATTGATGGGGGGCAGAGAGATTTTTGGTGGCAAGATGTGGAAAATGA
GAAACAGACCCTGATGGGTACTATGGGTAATTGGGCCTTTGGTATAGATT
TCTACAAGGTAGTATTTAGTTAGAGAGTTGGGAATGTTATTCACCTGATG
GACAATTGTAAAAACTTCACTTTATCTACAACGATTCTAATAGATTGATA
CCAATGAGGAAGAAGTAGACGAACCAGTGTCTGTCCGATCGTTTGCTTGC
CAAACCGAGTTATCTTTTGCTGTTTCGAAATCAGAGGTCACCCGAAGTTT
TGTTTATGTCAGCTGGCCAAGTGGATCCAGAATTACAGAGGTAAATTTTA
CTTATGATCATATAAAAGAAAATGCAATTGTATTCGTAACAAAGAAAAAT
TATTAGAATCTTTTGGGAAATCGACATTGGTTCTTTGATTCGAAATAGTA
GACTGCAAATGATTTTTTTTTGATTTTGATAAGTTTTGATGTTTCATATT
ATTTTGATGCTGTAAACTGTAGCAAGGTTCTTTTAAAATTCAATTATTTC
ACACCGCTAGTAAATAACAACCCTGGGTTTACAGACATCTAGAAAACGAA
AAAAAATCGTGAAAATGATTAGTTTAGCTTGGATATCCAGGCTAACTGCT
TTAGTTTTAACTACAATTTAGACGATTTTTTATTTTATAGCTTAAACCTC
AGTTTAATTCATTGGCAGTAAGACTACTCAGAAACAATCCTATCGGGTTC
TGTGTCCTACACATGGAAGACACCAGGAAAGAAATTTTGAGTTATTTACA
GAAAGACATCAGAAAAGAATGCCAAAGAATATGTCTTGAAAAGGTATGAT
TTTTTTCTGTGATGTTTTACATTCAGTTTGTTTTAGCCAGATTCTTCAGT
TGAAAACATACAGAAACATCAATCCAATTTTGAGGTTTGGAAGCTGCTAT
TGTATGTGCATCGTCAAATTTACTTTGATTATGTATGTATTGTAGTTGCT
TTTTGAATCAGAATCTGGTTTGTGTTTTCTCATGTTATTCAATAATCACG
CATGGTTAGAGACAGACAAAATTACAAACATTTTTATCAGGAGAAACTAG
ATCAAACAGGTCCTAAAGACGTGAAGTAGGGAGTCAATCTTGTCGGTAGT
TCTGAAAATTATAAGAACATTGAAGTTCCGTTGTAACTTTAATTTCATTT
ATCATTCTTTTTTACATTTTGGAGGTTGAATAAATCTTTGAATTTTCAAT
TTGAACTGTAGTAGTTTGGAGTGAAGTACTCTTGGGTACCTAATAGCCGT
CCCCCCCCCGCTAATTAATTTTTCAAAAATTTTCCACCCAGGACATTTTT
ATTCCAACCCCCCCCCCGCTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNAGTACTTTATGATAAATTTTTATTAATATCTAGGTTGACGGTG
AATTTTCTCCAACCATTTTCAAAAGTACCCGAAAGGAAGACCTCTTAGGC
T
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049535-exon-scaffold_160-1575043694:57480..58769 | TCONS_00049535-exon-scaffold_160-1575043694:57480..58769 | Clytia hemisphaerica | exon |
| TCONS_00049535-exon-scaffold_160-1575043694:55769..55829 | TCONS_00049535-exon-scaffold_160-1575043694:55769..55829 | Clytia hemisphaerica | exon |
| TCONS_00049535-exon-scaffold_160-1510915933:57480..58769 | TCONS_00049535-exon-scaffold_160-1510915933:57480..58769 | Clytia hemisphaerica | exon |
| TCONS_00049535-exon-scaffold_160-1510915933:55769..55829 | TCONS_00049535-exon-scaffold_160-1510915933:55769..55829 | Clytia hemisphaerica | exon |
| TCONS_00049535-exon-scaffold_160-1491911889:57480..58769 | TCONS_00049535-exon-scaffold_160-1491911889:57480..58769 | Clytia hemisphaerica | exon |
| TCONS_00049535-exon-scaffold_160-1491911889:55769..55829 | TCONS_00049535-exon-scaffold_160-1491911889:55769..55829 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_160 | supercontig | scaffold_160:55769..58769 - |
Blast
The following BLAST results are available for this feature:
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