TCONS_00049524 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049524
Unique NameTCONS_00049524
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length3099

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049524 ID=TCONS_00049524|Name=TCONS_00049524|organism=Clytia hemisphaerica|type=transcript|length=3099bp
ctaaagacAGTTTTCAGCTGGCGAGAGGTTAGAAAGTGAAGCCCCagaca
ttacgtaatgttttcgaAATTGAACTCTCCCCGATACGAATTAGGCGCga
cttaaaatttttttcatgagtttcaaaattgaagcGGTGGTTGTTTGTTG
GACTTGGTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACTTTGT
TGAAGAATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCCCCAA
GTTAATGTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCAGTGC
CCCAACAGGCTATGGAAAGTCAGTTGTTTTCCAAGCAGTGCCGAGGTACT
TTGAGGAGTTACGTCCAGAGATTAGCAATCCAGTGCTTCTAGTATTTTCA
CCACTCATAGCCTTGATAAACGATCAGATCAAGGCTGCTGGGGATAGCTG
TATCATGGCTATTTCCTTAGACAAGACTGTAACTGATGAGTGTTATGAAG
GTATGTCTATATTATTTAGATTTAGAATTATTTTACTTAAGATAAGTCTG
GTTGTTAGTATAGACTCTAGATTCATCAACAAAGAAGTACTCTTCTCTTA
ACTTAGGGGCCTACTGTAATAAATTAATACTTCGTCCTAAATTGATATTC
ATATAAGCCCTACCGTGaacatcaaatgactgaccaatcaaagcagaaga
atttcaaaacaaatgaactacgcagctccattcacagctctactctacaa
tttttgttttgattttatatactttgtattttaatgaccgaccaggtcat
tcatttgagggctatgcatgttatccTCCACTGATgaaagttacccgatc
tcacagtaACAATTAGCATGGAGTAACATGGCTTTACTTTCAGGCGACTT
CAGATAAATAACCCCTCGTTTCCTTAAACATTTTGGCAAATAACCCTCAA
TAACTGTCATTTGTTTATTACACACCAAAGAGTAGAGCAATAGCAATGTA
CTATTAAGTAAGCTGTCAGATAGTACAGCAgtttcattttataatatctc
tTAAAAAGTTTTATCTGAATTCAATGTTGTTCCCTCCAAGATATCAAAGC
TGGTACATATTCATTGGTGTATGCCTGTCCAGAAGTGTTGGAGACGAAAC
GTTGGCGAATGTTGTTTTCTGATTCTGAGTTTGTTGACCGTTGTATAGGA
GTCGTAGTTGATGAAGCACATGTAATGGTTGAATGGGGCAAGTCATCAAA
TGAATCCACAAAAGCATTCAGAGAAAGCTATTCCAAGATTGTTGAGCTGC
AAAGTCTCTTGTCATCAAAAGCAAGGTTCATGTTGTTCACTGCCACTGCA
ACCTCTGCTACTCAGGCCACCATCTTCTCAATGCTAAATCTTCAATCAAA
CGATGTGTACTGTGAAATATATCACCCTAACAAAAATAATGTTAGATTCA
CAGTCGAGCAGATTTCAATGGGCAAAGAGGATGGCAGGTATCTTGTCAAT
TTCTTTGACTTTATCATGGAAGAAATAATTGCCAAAAAAGAGCATACCTG
CAAAACCATTATATATGTCAACACAAGAAAGGAGGTCAACCTGTTAAATA
ATGGAATGGCCTCTAAACTCGGAGTTGATCTTTTTCTTAGTGGAAAGGAG
GGTAATCCAAGGTACCGCCTTGTTGAAGAGTTCCATGCATATAGTCCACA
GTCAGTAAAAAATCATGTCCTTGCCCAAGCTTCAATCCTTGAAAGTCATC
TACGTGTCATCATATGCACATCAGCTTTTGGTATGGGGGTCAATGTTAAA
GGTTTTAACCGATGCATCCATTTTGGACCGCCCTCTACGGTTGAATCTTT
TGTTCAGGAGGTTGGCAGAGTTGGTAGAGATGGTTCACCAAGCGAAAGTA
TTTTGATGTTCCATAAAAGTTTGGCAACCCATGCATCGTCTGATATGGTT
GAGTATGCTGGAAGCCATGTTAAGTGTAGGCGGGATTTTTTGATGGTCAA
GTTTCCAGGGACCTACTCGTCTCTTTCTAACTGTACTTGTTGTGATCTTT
GTTCAAATGTCTGTCAATGTAAGGAACCAAATTGTTGTAAGAAATTGAAG
CAACTTAATGTGAATGCTCAAGCTCCTGTAACTGAGCGTAGAAGAAACGT
ATCAATGGCTGAAAGGGATGAACTTAGGGGGTTATTGAATGATTTCCGTA
TGGAGatcttcaataaaaagaaaaatctaaaacagGTATCATTGCCTAAC
TTGTTCCATGAGTTCACAGAGTACCATGTGAAGCAAGTTATGGTAAAtgt
tacaaaaattttcaacatccaaGATCTTAAATCTCGTGTTGAGATCTGGC
GGACAAGACATGCAATCGAAGTCTTAAAAATTATAAACTCTGTTTTTCAT
GATATTGAAATAGACCAAATGGAACAGCTAAATCTTGAAGAGGAGCCTCT
GGGGCTTGATGATGCAAGTTTTATGAATGATACCAGATATCAATCTGTGA
CAGACTCACAAGTCAATAGCTATCTTCTTTCTGATTGCACTGATGGCAAT
ATTTCGAAACGAACTCTTGAAGATGAAGACTTTTAATTTATACTTACATG
TTTTGTGCACCCCTTTATCagggggttggtctaaaaagcagggttaGCTT
GTGGGGTACCCCTTTTTTGCCCAAATATTTGAAGGCTAGTGCAGGCTAGT
GTTTTAATTTGTTAAAATACAATGTTAGAACCTTTAACAGAAATCTggtt
taaatttaaaatccccAACATTCTAAAACagactcaaaatgaaaatcaga
cCAATGGGTTATCTCATAACATCAATGGATAATTTACCTCATACCTATGA
TAACTTTAGGGATTCACACCTTGTAGTTGTAAGGATTACATATCAAGGAT
ACATTTATTAATTATAGGTAATCAAAAGGTCTAAGTTCAAATAgtagaaa
aaacaaattttgaccATGTTGTGTtaattcaagttaaatctttggCTACC
CtcctttttagaccaacccattATCAGGTCAGTTATAGTTAAGGAAAGTC
CAAATCATAAAGACAAATTCAATATTGTCATTATTGGAAATAGAGAGAT
Run BLAST on NCBI

transcript from alignment at scaffold_160:45365..49244+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049524 ID=TCONS_00049524|Name=TCONS_00049524|organism=Clytia hemisphaerica|type=transcript|length=3880bp|location=Sequence derived from alignment at scaffold_160:45365..49244+ (Clytia hemisphaerica)
ctaaagacAGTTTTCAGCTGGCGAGAGGTTAGAAAGTGAAGCCCCagaca
ttacgtaatgttttcgaAATTGAACTCTCCCCGATACGAATTAGGCGCga
cttaaaatttttttcatgagtttcaaaattgaagcGGTGGTTGTTTGTTG
GACTTGGTTGCTACTTATTTTCTTGTATAGCATGGATGAATCAACTTTGT
TGAAGAATTTGGCGTTCCAGTTTGGTATCGAAGCTTTTCACCAGCCCCAA
GTTAATGTTCTGAGGGCATTTTTTAATGGAAAACACACATATTTCAGTGC
CCCAACAGGTTTGATTTGACAGGCAGTCATTATAGTAGTTTCATCTCTCC
CAAAAACTCTACTTTATTTGAGACAACTTCTCAAGATTGACCATCTAGGC
TACTAGGCAGGCATCAtacttaaaaatggtttttgaATTATACCCATCAA
AACAGCAGGGTAAAGATTCCAATTTTATCAAACGTACGTGTGTTTATAct
ataataaaattaaaaaaattaagaaagctTAAACAAATTTAACGTAGTCa
taaattaaaaatcagttGTGTTATTGTCATTTAGGCTATGGAAAGTCAGT
TGTTTTCCAAGCAGTGCCGAGGTACTTTGAGGAGTTACGTCCAGAGATTA
GCAATCCAGTGCTTCTAGTATTTTCACCACTCATAGCCTTGATAAACGAT
CAGATCAAGGCTGCTGGGGATAGCTGTATCATGGCTATTTCCTTAGACAA
GACTGTAACTGATGAGTGTTATGAAGGTATGTCTATATTATTTAGATTTA
GAATTATTTTACTTAAGATAAGTCTGGTTGTTAGTATAGACTCTAGATTC
ATCAACAAAGAAGTACTCTTCTCTTAACTTAGGGGCCTACTGTAATAAAT
TAATACTTCGTCCTAAATTGATATTCATATAAGCCCTACCGTGaacatca
aatgactgaccaatcaaagcagaagaatttcaaaacaaatgaactacgca
gctccattcacagctctactctacaatttttgttttgattttatatactt
tgtattttaatgaccgaccaggtcattcatttgagggctatgcatgttat
ccTCCACTGATgaaagttacccgatctcacagtaACAATTAGCATGGAGT
AACATGGCTTTACTTTCAGGCGACTTCAGATAAATAACCCCTCGTTTCCT
TAAACATTTTGGCAAATAACCCTCAATAACTGTCATTTGTTTATTACACA
CCAAAGAGTAGAGCAATAGCAATGTACTATTAAGTAAGCTGTCAGATAGT
ACAGCAgtttcattttataatatctctTAAAAAGTTTTATCTGAATTCAA
TGTTGTTCCCTCCAAGATATCAAAGCTGGTACATATTCATTGGTGTATGC
CTGTCCAGAAGTGTTGGAGACGAAACGTTGGCGAATGTTGTTTTCTGATT
CTGAGTTTGTTGACCGTTGTATAGGAGTCGTAGTTGATGAAGCACATGTA
ATGGTTGAATGGTTTGTAGATTATTTTAATCTTTCGGAAAGGCTTTACCA
TGTTTTTTTCATGACATTAATGAACCACATTTTTTTGTCTTCTAAAATTT
TACAAACCTCCTGCTCTCTAACACTactaattttctatttttgagtGTCT
CTTCATATATTATATGTCAACTAACCAGTCGTTACACGATTTCACTTAAA
ACATATTTAACAACCATAGGGGCAAGTCATCAAATGAATCCACAAAAGCA
TTCAGAGAAAGCTATTCCAAGATTGTTGAGCTGCAAAGTCTCTTGTCATC
AAAAGCAAGGTTCATGTTGTTCACTGCCACTGCAACCTCTGCTACTCAGG
CCACCATCTTCTCAATGCTAAATCTTCAATCAAACGATGTGTACTGTGAA
ATATATCACCCTAACAAAAATAATGTTAGGTAATAATTATTTAACTTTGG
TATATACAAAATATTCAACTAATTTTCTGATCTGACATTTTGTGGTTACA
GTATAGTAAAATTATAGTTATGATGGATGATAATAGAtatttgattataa
aaaattaGTAATAGCTCTCTTAGTAGATAATGTTATTAGAAGAAATTCCT
AAACTTTGTCTGTCAGGTTTCAaatcaaatctttaaaaagaaattttttt
attcacaaGGATTTTTAGACTTCAAGAAAAAGTACAATGATAAGGCTATC
AGTATCACATCATTTTTTGTCAATAGATTCACAGTCGAGCAGATTTCAAT
GGGCAAAGAGGATGGCAGGTATCTTGTCAATTTCTTTGACTTTATCATGG
AAGAAATAATTGCCAAAAAAGAGCATACCTGCAAAACCATTATATATGTC
AACACAAGAAAGGAGGTCAACCTGTTAAATAATGGAATGGCCTCTAAACT
CGGAGTTGATCTTTTTCTTAGTGGAAAGGAGGGTAATCCAAGGTACCGCC
TTGTTGAAGAGTTCCATGCATATAGTCCACAGTCAGTAAAAAATCATGTC
CTTGCCCAAGCTTCAATCCTTGAAAGTCATCTACGTGTCATCATATGCAC
ATCAGCTTTTGGTATGGGGGTCAATGTTAAAGGTTTTAACCGATGCATCC
ATTTTGGACCGCCCTCTACGGTTGAATCTTTTGTTCAGGAGGTTGGCAGA
GTTGGTAGAGATGGTTCACCAAGCGAAAGTATTTTGATGTTCCATAAAAG
TTTGGCAACCCATGCATCGTCTGATATGGTTGAGTATGCTGGAAGCCATG
TTAAGTGTAGGCGGGATTTTTTGATGGTCAAGTTTCCAGGGACCTACTCG
TCTCTTTCTAACTGTACTTGTTGTGATCTTTGTTCAAATGTCTGTCAATG
TAAGGAACCAAATTGTTGTAAGAAATTGAAGCAACTTAATGTGAATGCTC
AAGCTCCTGTAACTGAGCGTAGAAGAAACGTATCAATGGCTGAAAGGGAT
GAACTTAGGGGGTTATTGAATGATTTCCGTATGGAGatcttcaataaaaa
gaaaaatctaaaacagGTATCATTGCCTAACTTGTTCCATGAGTTCACAG
AGTACCATGTGAAGCAAGTTATGGTAAAtgttacaaaaattttcaacatc
caaGATCTTAAATCTCGTGTTGAGATCTGGCGGACAAGACATGCAATCGA
AGTCTTAAAAATTATAAACTCTGTTTTTCATGATATTGAAATAGACCAAA
TGGAACAGCTAAATCTTGAAGAGGAGCCTCTGGGGCTTGATGATGCAAGT
TTTATGAATGATACCAGATATCAATCTGTGACAGACTCACAAGTCAATAG
CTATCTTCTTTCTGATTGCACTGATGGCAATATTTCGAAACGAACTCTTG
AAGATGAAGACTTTTAATTTATACTTACATGTTTTGTGCACCCCTTTATC
agggggttggtctaaaaagcagggttaGCTTGTGGGGTACCCCTTTTTTG
CCCAAATATTTGAAGGCTAGTGCAGGCTAGTGTTTTAATTTGTTAAAATA
CAATGTTAGAACCTTTAACAGAAATCTggtttaaatttaaaatccccAAC
ATTCTAAAACagactcaaaatgaaaatcagacCAATGGGTTATCTCATAA
CATCAATGGATAATTTACCTCATACCTATGATAACTTTAGGGATTCACAC
CTTGTAGTTGTAAGGATTACATATCAAGGATACATTTATTAATTATAGGT
AATCAAAAGGTCTAAGTTCAAATAgtagaaaaaacaaattttgaccATGT
TGTGTtaattcaagttaaatctttggCTACCCtcctttttagaccaaccc
attATCAGGTCAGTTATAGTTAAGGAAAGTCCAAATCATAAAGACAAATT
CAATATTGTCATTATTGGAAATAGAGAGAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031419XLOC_031419Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049524-exon-scaffold_160-1491911889:45365..45672TCONS_00049524-exon-scaffold_160-1491911889:45365..45672Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1510915933:45365..45672TCONS_00049524-exon-scaffold_160-1510915933:45365..45672Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1575043694:45365..45672TCONS_00049524-exon-scaffold_160-1575043694:45365..45672Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1491911889:45949..46875TCONS_00049524-exon-scaffold_160-1491911889:45949..46875Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1510915933:45949..46875TCONS_00049524-exon-scaffold_160-1510915933:45949..46875Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1575043694:45949..46875TCONS_00049524-exon-scaffold_160-1575043694:45949..46875Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1491911889:47084..47293TCONS_00049524-exon-scaffold_160-1491911889:47084..47293Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1510915933:47084..47293TCONS_00049524-exon-scaffold_160-1510915933:47084..47293Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1575043694:47084..47293TCONS_00049524-exon-scaffold_160-1575043694:47084..47293Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1491911889:47591..49244TCONS_00049524-exon-scaffold_160-1491911889:47591..49244Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1510915933:47591..49244TCONS_00049524-exon-scaffold_160-1510915933:47591..49244Clytia hemisphaericaexon
TCONS_00049524-exon-scaffold_160-1575043694:47591..49244TCONS_00049524-exon-scaffold_160-1575043694:47591..49244Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_160supercontigscaffold_160:45365..49244 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.623422	0.123042	0	0.229959	0.640211	0.798789	0.364301	0.455057	0.213204	0.0984035	0.118816	0.380039	0.550745	0.685322	0.155174	0.240919	0.125845	0.223514	0.742763	0.929491	0.489081	0	0.201167	0.271841	0.64616	0.14034	1.51544	0.653334	0.633406	0.579725
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049524 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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