TCONS_00049481 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049481
Unique NameTCONS_00049481
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length728

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049481 ID=TCONS_00049481|Name=TCONS_00049481|organism=Clytia hemisphaerica|type=transcript|length=728bp
CTTAGAATGGTCGAATGATTAGTTTGCTTCAAGACTTTAACGAGTCAGag
gGAAAACTATACATCATCAGTGAGCTCCTTCCATTAGTTAGAAACAAATA
ATGGTTGACAATCTAAATAGTCAGCAAAATGTTGGTATTGATAAAAACAA
ATGTCGAGAATGGATGAAAATTGCCAGATCTGTTCAAGTGTGTCTCAAAC
AAAACTTAATTGATATTCTACACGATCCTGAGATAGATGGTCTTCCAAAG
AATTCAAAGGACCGAGACGACATTCTAAACAAATATCGTCaagtaaatga
aaatgaattaAAAGAGATGATTATGTTTGGGCAACTAGATTTCATTTCAA
AGGATGGACAATCTCAAATCAGGAGATTATGCATTCCAAATCTGGTTTAC
TTAATCAATCGGTTAACCAATATTGATAAGATAGATTCTGGTAAGTTGGC
TGGTCTTTCCAGTGCGTTGGAAATCCATCAAGATATTTATAATGGGTCAA
TTACTTCCATGGGAGAAGAGAATTTCCAGAACCTTTGGAAACGAATCTAT
GATGTATTGATTGTTCTGGGATACTCTGAGATACCAGTTTTCCACTATCT
GAAAGAGAAAGCATCGCTAGATGAGATAGATACTGAACAAATTGAGGTTC
TAGATGAACGTTGCAGATCTTTAAAGGCCCTGGATAACGATATCGAAATA
AAACAAAGAGAAATGAGCTTTTTAATGG
Run BLAST on NCBI

protein sequence of TCONS_00049481-protein

>TCONS_00049481-protein ID=TCONS_00049481-protein|Name=TCONS_00049481-protein|organism=Clytia hemisphaerica|type=polypeptide|length=209bp
MVDNLNSQQNVGIDKNKCREWMKIARSVQVCLKQNLIDILHDPEIDGLPK
NSKDRDDILNKYRQVNENELKEMIMFGQLDFISKDGQSQIRRLCIPNLVY
LINRLTNIDKIDSGKLAGLSSALEIHQDIYNGSITSMGEENFQNLWKRIY
DVLIVLGYSEIPVFHYLKEKASLDEIDTEQIEVLDERCRSLKALDNDIEI
KQREMSFLM
Run BLAST on NCBI

transcript from alignment at scaffold_16:193948..194913+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049481 ID=TCONS_00049481|Name=TCONS_00049481|organism=Clytia hemisphaerica|type=transcript|length=966bp|location=Sequence derived from alignment at scaffold_16:193948..194913+ (Clytia hemisphaerica)
CTTAGAATGGTCGAATGATTAGTTTGCTTCAAGACTTTAACGAGTCAGGT
AAGTCGACTAAAAACTGAATTAATGAATTTTGACGACATTTAATTTAAGT
TTTGGTGGACTTTGTGTCATACTGGTCTGTACCACTCGTCGCACAGGCAa
ttctttatcttttgaaaaatgtttctccTGTAGGTACATGTGTAATTTGG
CTATGAAAGAAGGCTATCATAACTATTGGCGAGCATTTGCGTAAGAAATG
AATGGTTATGCTatcttgatattttttgatttttagaggGAAAACTATAC
ATCATCAGTGAGCTCCTTCCATTAGTTAGAAACAAATAATGGTTGACAAT
CTAAATAGTCAGCAAAATGTTGGTATTGATAAAAACAAATGTCGAGAATG
GATGAAAATTGCCAGATCTGTTCAAGTGTGTCTCAAACAAAACTTAATTG
ATATTCTACACGATCCTGAGATAGATGGTCTTCCAAAGAATTCAAAGGAC
CGAGACGACATTCTAAACAAATATCGTCaagtaaatgaaaatgaattaAA
AGAGATGATTATGTTTGGGCAACTAGATTTCATTTCAAAGGATGGACAAT
CTCAAATCAGGAGATTATGCATTCCAAATCTGGTTTACTTAATCAATCGG
TTAACCAATATTGATAAGATAGATTCTGGTAAGTTGGCTGGTCTTTCCAG
TGCGTTGGAAATCCATCAAGATATTTATAATGGGTCAATTACTTCCATGG
GAGAAGAGAATTTCCAGAACCTTTGGAAACGAATCTATGATGTATTGATT
GTTCTGGGATACTCTGAGATACCAGTTTTCCACTATCTGAAAGAGAAAGC
ATCGCTAGATGAGATAGATACTGAACAAATTGAGGTTCTAGATGAACGTT
GCAGATCTTTAAAGGCCCTGGATAACGATATCGAAATAAAACAAAGAGAA
ATGAGCTTTTTAATGG

Coding sequence (CDS) from alignment at scaffold_16:193948..194913+

>TCONS_00049481 ID=TCONS_00049481|Name=TCONS_00049481|organism=Clytia hemisphaerica|type=CDS|length=627bp|location=Sequence derived from alignment at scaffold_16:193948..194913+ (Clytia hemisphaerica)
ATGGTTGACAATCTAAATAGTCAGCAAAATGTTGGTATTGATAAAAACAA
ATGTCGAGAATGGATGAAAATTGCCAGATCTGTTCAAGTGTGTCTCAAAC
AAAACTTAATTGATATTCTACACGATCCTGAGATAGATGGTCTTCCAAAG
AATTCAAAGGACCGAGACGACATTCTAAACAAATATCGTCaagtaaatga
aaatgaattaAAAGAGATGATTATGTTTGGGCAACTAGATTTCATTTCAA
AGGATGGACAATCTCAAATCAGGAGATTATGCATTCCAAATCTGGTTTAC
TTAATCAATCGGTTAACCAATATTGATAAGATAGATTCTGGTAAGTTGGC
TGGTCTTTCCAGTGCGTTGGAAATCCATCAAGATATTTATAATGGGTCAA
TTACTTCCATGGGAGAAGAGAATTTCCAGAACCTTTGGAAACGAATCTAT
GATGTATTGATTGTTCTGGGATACTCTGAGATACCAGTTTTCCACTATCT
GAAAGAGAAAGCATCGCTAGATGAGATAGATACTGAACAAATTGAGGTTC
TAGATGAACGTTGCAGATCTTTAAAGGCCCTGGATAACGATATCGAAATA
AAACAAAGAGAAATGAGCTTTTTAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031394XLOC_031394Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049481-proteinTCONS_00049481-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049481-exon-scaffold_16-1491911889:193948..193995TCONS_00049481-exon-scaffold_16-1491911889:193948..193995Clytia hemisphaericaexon
TCONS_00049481-exon-scaffold_16-1510915933:193948..193995TCONS_00049481-exon-scaffold_16-1510915933:193948..193995Clytia hemisphaericaexon
TCONS_00049481-exon-scaffold_16-1575043694:193948..193995TCONS_00049481-exon-scaffold_16-1575043694:193948..193995Clytia hemisphaericaexon
TCONS_00049481-exon-scaffold_16-1491911889:194234..194913TCONS_00049481-exon-scaffold_16-1491911889:194234..194913Clytia hemisphaericaexon
TCONS_00049481-exon-scaffold_16-1510915933:194234..194913TCONS_00049481-exon-scaffold_16-1510915933:194234..194913Clytia hemisphaericaexon
TCONS_00049481-exon-scaffold_16-1575043694:194234..194913TCONS_00049481-exon-scaffold_16-1575043694:194234..194913Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:193948..194913 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	1.38176	1.28783	0	0.0833107	0	0.255777	5.72041	7.38348	0.295168	0.730378	0.0783778	0.0712568	0	0	0	0	0	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049481 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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