TCONS_00049480 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00049480
Unique Name	TCONS_00049480
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	594

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_16:187250..194913+

transcript sequence

>TCONS_00049480 ID=TCONS_00049480|Name=TCONS_00049480|organism=Clytia hemisphaerica|type=transcript|length=594bp
GTATTGATGAAAACAAATGTCGAGAATGGATGAAAATTGCCAGATCTGTT
CAAGTGTGTCTCAAACAAAACTTAATTGATATTCTAGACGATCCTGAGAT
AGATGGTCTTCCAAAGAATTCAAAGGAACGAGACGACATTCTAAACAAAT
ATCGTCaagtaaatgaaaatgaattaAAAGAGATGATTATGTTTGGGCAA
CTAGATTTCATTTCAAAGGATGGACAATCTCAAATCAGGAGATTATGCAT
TCCAAATCTGGTTTACTTAATCAATCGGTTAACCAATATTGATAAGATAG
ATTCTGGTAAGTTGGCTGGTCTTTCCAGTGCGTTGGAAATCCATCAAGAT
ATTTATAATGGGTCAATTACTTCCATGGGAGAAGAGAATTTCCAGAACCT
TTGGAAACGAATCTATGATGTATTGATTGTTCTGGGATACTCTGAGATAC
CAGTTTTCCACTATCTGAAAGAGAAAGCATCGCTAGATGAGATAGATACT
GAACAAATTGAGGTTCTAGATGAACGTTGCAGATCTTTAAAGGCCCTGGA
TAACGATATCGAAATAAAACAAAGAGAAATGAGCTTTTTAATGG

Run BLAST on NCBI

transcript from alignment at scaffold_16:187250..194913+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00049480 ID=TCONS_00049480|Name=TCONS_00049480|organism=Clytia hemisphaerica|type=transcript|length=7664bp|location=Sequence derived from alignment at scaffold_16:187250..194913+ (Clytia hemisphaerica)
GTATTGATGAAAACAAATGTCGAGAATGGATGAAAATTGCCAGATCTGTT
CAAGTGTGTCTCAAACAAAACTTAATTGATATTCTAGACGATCCTGAGAT
AGATGGTCTTCCAAAGAATTCAAAGGAACGAGACGACATTCTAAACAAat
attagtagggggaaatttgtaaaatcgtNAATATCGTCaagtaaatgaaa
atgaattaAAAGAGATGATTATGTTTGGGCAACTAGATTTCATTTCATAG
GATGGACAATCTCAAATCAGGAGATTATGTATTCCAAATCTGGTTTACTT
AATCAATCAGCTAACCAATATTGATAAGATGCATTCTGGTAAATTGGCTG
GTCTTTCCAGTGCATTGGAAATCTATCAAGATATTTATAAAGGGTCGATT
AGTTCCATGGAGTTTGGCTGCTTCACAATCTCAAGATTAAAGTGGTTCTG
ATGGAGCCTCGTTTCACCAATATTGACGGAAATATTTTGAGTCATGAACT
TTGGGGGATTATTCGGGTAGTTGATTTAAAGAGAGTGCCAGTTGTTAGAG
ATTTTATGTCTACATGCAATTcaaatagaacaattttataaaaacaaaat
tcaatgtttcttataaaagcgttgtgaatttataaagttttgaattttga
ctttttagaagatatattttatgagaacaagacgctcaattttggaaaaa
aattgagaacaaattaagaataatcccagcctcagatttcagaaatgccT
AAGAAAATGCCTCATTTAAGTCCCTAGATTTTATAAATCACAAAGTAATA
AGAACAATCGAggctgagccaaaatttactgattgttaaaaaaaaagccT
AAGTCTAAAGAAAATAGTGCTATATGTCaaaaaactgtactttttgctGT
AAAGATATTTTAAAGNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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NNNNNNNNNNNATTTTCTTTAAGTGACTCGGATATTTTTAGAGTTTCTAT
TTACCATCCCATCCCCGACCACCGTCCCACCGAATTTCCTTTTACGTATA
TCTTGACGGGTattaactacttgtggtattgCTAGAAATCGTTTGGGAAA
TACCCTTTTTCGTTATTACTATACTTTAGAAATTGACAATGAAATCGTCA
TCACACTATCGTGTTACAACAGGGTTTGAACCCACACCGATTATAGACCT
TCAGATTTGAATGCACGCGTACTAACTGTTTGTGAGTTAAGGTAAAGCAA
GCTAGCGTTATTTTCTAGGAAGTCTCGATCAATCAACCTTCAATTTAAGT
AATGGGCTGTTTTTCGCGTATAAAACAACTGACTCAGGGTTTGAACCAGC
ACGCTATTCAACTCTTAGATTGGTAAGATTACACTCTTGCTAACTGCGCT
ACTTAAACAtgacatttccataatcatCTGACGTAAGTAATGTAATAATC
AAACGAAAAGTATTTCCTTGCTTGGACTCAAGTGAGTGCAATGCAGAACG
ATTGGCTAACGACCTACCGttgagaaaatatcttaaaaGATGTTATACCT
ATGTGTTCTGAAACATGAAAAATAGTATCAACcctgtatttttgttttta
acacCCGCTTGTGGGCAACGAGGGAAGGTTCAGGCTTCTAGGTTTTCTAT
NGTTGATTATTTTATCTACGGCTGAGCAAGAACATTCAAATGAAGGCTCC
GTTCCCAGGAAAATAGAGGTTTCCGTGCTGCAGTCCATACCAGTCTGTAT
GCGCCCTAACCATGATTATTCATGGTTTAACTTGCGGCAGCCGGTTCCTG
GGAATGTCACGATGCGTGAATTTGAGAGTGATTCTTGTTATTGAAGCAAA
GGTGCTCCAAGGATATTCATCAACCTTAGCTAGTAATTCGGTTATGTATT
CATAATCAATGCTACTAACGTTCGGTGGATAGAAAGCCTTTGCCCTTGCT
AAGCTCTATGACCCGGACACTCTATTACATATTGATCAGTTGATTCCCGG
ACACTCTATTTCATGAAAAACCAAAATAATGGAAATCCAATACCTTGTAT
TCAACAAATATAATCTTTTTCAATGGTCTTCTAAtccaaaatcattttct
ttaagTGACTCGgatatttttagaatttctatTTACCATCCCATCCCCGA
CCACCGTCCCACCGAATTTCCTTTTACGTATATCTTGACGGGTattaact
acttgtggtattgCTAGAAGTCGTTTGGGAAATACCCTTTTTCGTTATTA
CTATACTTTAGAAATTGACAATGAAATCGTCATCACACTATTGTGTTACA
ACAGGGTTTGAACCCACACCGATTATAGACCTTCAGATTAGAATGCACGC
GTACTAACTATTTGTGAGTTAAGGTAAAGCAAGCTAGCGTTATTTTCTAG
GAAGTCTCGATCAATCAACCTTCAATTTAAGTAATGGGCTGTTTTTCGCG
TATAAAACAACTGACTCAGGGTTTGAACCAGCACGCTATTCAACTCTTAG
ATTGGTAAGATTACACTCTTGCTAACTGCGCTACTTAAACAtgacatttc
cataatcatCTGACGTAAGTAATGTAATAATCAAACGAAAAGTATTTCCT
TGCTTGGACTCAAGTGAGTGCAATGCAGAACGATTGGCTAACGACCTACC
GttgagaaaatatcttaaaaGATGTTATACCTATGTGTTCTGAAACATGA
AAAATAGTATCAACCCTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
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TGAAGGCTTTATCTTTTGTATCTTTTGAAGTGGTACCCTGGTGATACCAT
TATGACTAGATATCCTGTTGCTAGGGAAATGCATAGTgaccaaatcaaaa
aatcaagtcGAGCATAATTTCCTAGTTTGTTTGAAGTAACACAGCTTGCT
TAGAATGGTCGAATGATTAGTTTGCTTCAAGACTTTAACGAGTCAGGTAA
GTCGACTAAAAACTGAATTAATGAATTTTGACGACATTTAATTTAAGTTT
TGGTGGACTTTGTGTCATACTGGTCTGTACCACTCGTCGCACAGGCAatt
ctttatcttttgaaaaatgtttctccTGTAGGTACATGTGTAATTTGGCT
ATGAAAGAAGGCTATCATAACTATTGGCGAGCATTTGCGTAAGAAATGAA
TGGTTATGCTatcttgatattttttgatttttagaggGAAAACTATACAT
CATCAGTGAGCTCCTTCCATTAGTTAGAAACAAATAATGGTTGACAATCT
AAATAGTCAGCAAAATGTTGGTATTGATAAAAACAAATGTCGAGAATGGA
TGAAAATTGCCAGATCTGTTCAAGTGTGTCTCAAACAAAACTTAATTGAT
ATTCTACACGATCCTGAGATAGATGGTCTTCCAAAGAATTCAAAGGACCG
AGACGACATTCTAAACAAATATCGTCaagtaaatgaaaatgaattaAAAG
AGATGATTATGTTTGGGCAACTAGATTTCATTTCAAAGGATGGACAATCT
CAAATCAGGAGATTATGCATTCCAAATCTGGTTTACTTAATCAATCGGTT
AACCAATATTGATAAGATAGATTCTGGTAAGTTGGCTGGTCTTTCCAGTG
CGTTGGAAATCCATCAAGATATTTATAATGGGTCAATTACTTCCATGGGA
GAAGAGAATTTCCAGAACCTTTGGAAACGAATCTATGATGTATTGATTGT
TCTGGGATACTCTGAGATACCAGTTTTCCACTATCTGAAAGAGAAAGCAT
CGCTAGATGAGATAGATACTGAACAAATTGAGGTTCTAGATGAACGTTGC
AGATCTTTAAAGGCCCTGGATAACGATATCGAAATAAAACAAAGAGAAAT
GAGCTTTTTAATGG

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031394	XLOC_031394	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00049480-exon-scaffold_16-1491911889:187250..187386	TCONS_00049480-exon-scaffold_16-1491911889:187250..187386	Clytia hemisphaerica	exon
TCONS_00049480-exon-scaffold_16-1510915933:187250..187386	TCONS_00049480-exon-scaffold_16-1510915933:187250..187386	Clytia hemisphaerica	exon
TCONS_00049480-exon-scaffold_16-1575043694:187250..187386	TCONS_00049480-exon-scaffold_16-1575043694:187250..187386	Clytia hemisphaerica	exon
TCONS_00049480-exon-scaffold_16-1491911889:194457..194913	TCONS_00049480-exon-scaffold_16-1491911889:194457..194913	Clytia hemisphaerica	exon
TCONS_00049480-exon-scaffold_16-1510915933:194457..194913	TCONS_00049480-exon-scaffold_16-1510915933:194457..194913	Clytia hemisphaerica	exon
TCONS_00049480-exon-scaffold_16-1575043694:194457..194913	TCONS_00049480-exon-scaffold_16-1575043694:194457..194913	Clytia hemisphaerica	exon

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_16	supercontig	scaffold_16:187250..194913 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5.03457	1.45655	0.560891	2.33609e-07	0	0	0	0	0	0	0	0

Blast

The following BLAST results are available for this feature:

BLAST of TCONS_00049480 vs. Swiss-Prot (Human)

BLAST of TCONS_00049480 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0


Match Name	E-value	Identity	Description

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TCONS_00049480 (transcript) - C. hemisphaerica