TCONS_00049495 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049495
Unique NameTCONS_00049495
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length908

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049495 ID=TCONS_00049495|Name=TCONS_00049495|organism=Clytia hemisphaerica|type=transcript|length=908bp
tttcagaaatatagaacaaaaataaaaataatttctaaatACCATGTAAA
TGTGGCTTTACACATTACGTCACCTTTCTCTTACTGGAATAAGAAAGTCA
TCTCAATTCGCTGGATCCAAATGGCTACCAAGGGCCTTTCGCCATCGAAC
GTACATCAATTCACCACGTGATGTAGTGATTTACGAGCATAAGAAATCCA
CAGCCTTCAATAAACTATTAACATTGGTTGGTGTTGGACAATGGTTCGTG
ACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAG
TTGGATAcccattgatgaGTCGGAGAAAAGGAAAGAAGGAAGCACACGTC
TACCATTAGCTGATTGGAAGTACCGTGCTGGATTCTCATTGTTTGTGATT
GGTACATCGACCGCTATGTTGGTGACCATTTGTGTCTTGTCACTTAGATC
AGTTACATCCATCACATTGATGAAGAACAGCTCGAATGTTTTAATCAATA
CAATAACGCCCGTAGGAACACCTTTCAAAACGATCACGCCCATTACTGAA
GTCTCAGCCATTCAACAGCGCACAAcgcAAGCTGGTAACATACCGTTGAA
GTTGAAGAATCATCGTTTTCATTTCTTGGTTGACAAAAGTGGACATTTTC
TACAACCCACTCTCTTCGATCGGACAGTTGGTATAAGTAGAAATTTTGGA
CAGGTCAAAAAATGAcataattattttaaagataGTCAAGGAATTTTGAA
taagtattattttttaaatagaaatttttacttttttgattttattgtat
attttttcgTTTTCTGTTTTGTAAGAAAATACCATAACccaagattttga
aatttgagtACGGAACCGCAGCTTGATTGTTATGAGAactaataaaaatt
aaaattgg
Run BLAST on NCBI

transcript from alignment at scaffold_16:77579..87967-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049495 ID=TCONS_00049495|Name=TCONS_00049495|organism=Clytia hemisphaerica|type=transcript|length=10389bp|location=Sequence derived from alignment at scaffold_16:77579..87967- (Clytia hemisphaerica)
TTTCAGAAATATAGAACAAAAATAAAAATAATTTCTAAATACCATGTAAA
TGTGGCTTTACACATTACGTCACCTTTCTCTTACTGGAATAAGAAAGTCA
TCTCAATTCGCTGGATCCAAATGGCTACCAAGGGTAACAAAGGTATCATT
CTTCGATCACAGTTGACTCTCTCTAATTCGATCTTCAAGGGACCAAGAAT
ATTATTCGGATTAGAGAAAGGTTCGAATTACAAAGAGTAGTTCACTTTCC
AGCTGAGGGGGCCAATATTTTGGTTCGAATTACAGAAAGATTCGAATTAG
AGAGAGTTGACTGTACTTAAGATCAGTGGTTTCGACATTCTTTACTAACC
GCATAATGACTTTGGTAGACATTTCTGACGTCATTTGTCTGCTCGCACTC
CACCCCCTTCATATAGTTTTAGTGCAAATTAATTCCAACATAGGAATAAA
GCAAGGGCCTATAAATTTAGTACCATTAAGCTACTGAATACTGGAGTGAG
ATTTGCCGCTCGCCACTAAAATTGAGTTTGTTGCGTTATTCTCGTGTTGG
CGTATGGTAACCACAGATTTCACAGAAGTCCAAAGGGCTAGATAGAGTGC
TTCAAACGCTTCTCCAAGCAAAAAAGTGAAAATCGCAAAAAAACATTGTT
ACTATTGTTTTTGAAAATCCGGTGCGCTTCTGTTTGGTCAAGCGCTGAAA
TTTTGTTGTATTAAAAATACAATGTCTCGTGACCTAGATAGGATTTCCTA
CCTATAACCACGGCACATTTTTCAACCATAGTATTCCATCTAGCCCTCCC
TAACTCCTTGAGGATGATATGAATTACGTATACTCTTCTGTTCTCGTTTC
CAGGCCTTTCGCCATCGAACGTACATCAATTCACCACGTGATGTAGTGAT
TTACGAGCATAAGAAATCCACAGCCTTCAATAAACTATTAACATTGGTTG
GTGTTGGACAATGGTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAA
AGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGCCT
CGTTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGC
CTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTC
TTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCC
TTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTC
GTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTT
TAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGAC
TGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTT
GGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCG
AAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATA
CCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATT
TGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCAT
TGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTT
AGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATG
AGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCA
TGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAA
GCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTT
CAAAGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAG
TCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAG
CATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCG
TTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGC
CTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTC
TTTTCGTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCC
TTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTC
GTGACTGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTT
TAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGAC
TGGCGAAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTT
GGATACCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCG
AAATTTGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATA
CCCATTGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATT
TGCTTAGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCAT
TGATGAGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTT
AGTCATGTTTCAAAGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATG
AGTAAGCAAGTCTCGTTTTCTTTTCGTGACTGGCGAAATTTGCTTAGTCA
TGTTTCAAAGCATGCCTGCCTTCTTTAGCTGGATACCCATTGATGAGTAA
GAAAGCCTCGTTTTTTTCGTGACTGGTTACACGAGTTTAGTCATGTTTCA
AAGTATGCCTGCCTTCTTTAGCTGGATACCCATTGATGAGTAAGAAAGCC
TCGTTTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGTAT
GCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGCAAGTCTCGTTT
TCTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCATGCCTG
CCTTCTTTAGTTGGATACCAATTGATGAGTAAGCAAGCCTCGTTTTTTTT
CGTGACTGGTTACACGAGTTTAGTCATGTTTCAAAGTATGCCTGCCTTCT
TTAGTTGGATACCCATTGATGAGTAAGAAAGCCTCGTTTTTTTCGTGACT
GGTTACACGAGTTTAGTCATGTTTCAAAGTATGCCTGCCTTCTTTAGCTG
GATACCCATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACA
TGAGTTCAGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCC
ATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTTC
AGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCCATTGATG
AGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTTCAGTCATG
TTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCCATTGATGAGTAAGA
AAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTTCAGTCATGTTTCAAA
GCATGCCTGCATTGTTTAGCTGGATACCCATTGATGAGTAAGAAAGCCTC
TTTTTTTTCGTGACTGGTTACATGAGTTCAGTCATGTTTCAAAGCATGCC
TGCATTGTTTAGCTGGATACCCATTGATGAGTAAGAAAGCCTCTTTTTTT
TCGTGACTGGTTACATGAGTTCAGTCATGTTTCAAAGCATGCCTGCATTG
TTTAGCTGGATACCCATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGAC
TGGTTACATGAGTTCAGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCT
GGATACCCATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTAC
ATGAGTTCAGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACC
CATTGATGAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTT
CAGTCATGTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCCATTGAT
GAGTAAGAAAGCCTCTTTTTTTTCGTGACTGGTTACATGAGTTCAGTCAT
GTTTCAAAGCATGCCTGCATTGTTTAGCTGGATACCCATTGATGAGTAAG
AAAACCTTATTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAA
AGCATGCCTGCCTTCTTTAGTTGGATACCCATTGATGAGTAAGAAAGCCT
CGTTTTTTTTTCGTGACTGGTTACATGAGTTTAGTCATGTTTCAAAGCAT
GCCTGCATTGTTTAGCTGGATACCCATTGATGAGTAAGAAAGCCTCTTTT
TTTTCGTGACTGGTTACATGAGTTCAGTCATGTTTCAAAGTATGCCTGCC
TTCTTTAGCTGGATACCCATTGATGAGTAAGAAAACCTTATTTTTTTCGT
GACTGGTTACATGAGTTCAGTCATGTTTCAAAGTATGCCTGCCTTCTTTA
GCTGGATACCCATTGATGAGTAAGAAAACCTTATTTTTTTCGTGACTGGT
TACATGAGTTTAGTCATGTTTCAAAGCATGCCTGTATTCTTTAGTTGGAT
GCCCCATTGATGAGTAAGCAAGCCTCGTTTTTTTTAATTTACATCTTGGA
ATCTCAAGCTTTTGTCATATGGAACGATATACTCTCAGGTCCCTAATAAA
CGAGGGAGGGGTGAAATCTGAAAATATTTTTTAACAAGCCGTATATGTAT
AAAAGTTGCGAAGCGATCCAGAGCCACCTCGATTCGCAAGTTGCAAGCAA
AACATTTAGTTCCAAATAATAGGAAAATTTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNTACTGTTTGTGTACATAAAAGTCATCTTTAAA
GTTCTATTTCAATGATCTTAAAAAGTTATCAAAAATAGCAAAACAAATTT
TTTCCAGCAAGCTGCATGTTCTCACGACAAAAGTTTTCCAAATTTTGAAC
GCATGAAAATTAAATGTTCATGGTTTGCTACAAAAGTTTTCCATAGTTTA
AACCAATTCTTTAAAGATAATTTCATATTTCACGACACGTTTTCCACATT
TTAATCAAAACGGAAGATCATTTCAAAGTTTACGATGAAAACTTTTAATT
TAAAAAGTTATGTAAGGTGATTTCCGATTGTTTACATCCATATTCAATGT
CTTTACGATTAGCTTACTTTTTCAGAGGTTGACATAACATTTATTCATCA
ACATCACCCATCAGGAGGCCGCCTGGCTGTGGTTGTCAGCTTCAAAAGTG
TTGGAAATAAGCTGCTACCGTATATAATTTCCTCCTCAAAGAGGTTTCAA
TTACCAGTCGAGTGTCATTGTTGTAGAAGAAGCACCAAGTAAAATTCAAT
CTATAGTTAATTTTGCTCCAGGTTCAAATTTTTCCAAACAACAAAATGAA
TGAAGCCAAGGCAAGGAACTTCAGACTTTTTTATTTTTAAAGCTGCAAGT
GTTTCATTTCCAGGCACAACATGGTCAGATTTCTCCAAAAATATTCAGTT
TTTTGCCCTGTTACAATTCATTTACATGTACAGGCAAAATTCAAGTTAGC
TTGTTGTCAAAATTGGCAAACTTGTCCTGTTTTTTTCAAGAAAATGCATC
TCTCATTCCAAACCAACAGAATTGAAACAAAACATCAAATCCAGGGAGGT
ATAATAAGAAAACTTTATCATCCACCAGTTCTTGTGCCAATCAGACAGAA
AACATGATCCAATTCGACTCTTGAAGCATGAAAATCGAAGAAAAATAACC
GAGGAGCAGTACATATTTGTTGTCTCCATTTGTTGCCGCCATCTTTAATG
TTTTGACGGCTAGAAACCAGTATGGTCTAATCATCAAGACCCTTCCGAGC
CGGGCGACGTTCTACAATCTGCAAGGAGAATAGAGCACCGCACCGATGTT
TTCCGGCGACGTGTCTTTAAAAATAACGTTGTCCGTCTCAAAAAAAGCCA
CTCTACTGTTCTCTCGCTCGGAGCTCGATTGAATACGAGCCATGTAGTCA
TACACGGAGTTTCAAATTCGAATACGTCAAATTTAATATAGTGGAGATAA
TTTTCTCTGTCATTTCCTGGAATATCCTTCATGTTTTATCCCCTTAATAT
TCATTGTCGCGCGACTCGGAGATACTAAACGTTTTTCCCATCTCCTGCCT
TTCAGATGGTTGAAAGAATGGAAAGTTAAAGGTACGCACACACGATAGCA
AAACTGCTTCGCTCATGTACATTCGCTTCGCAAAAATTACTAAACGAAAG
GGGTTCTTATAAGGTCCAGGGAGGTTTGTAAAAAATCGAAAAATTAACAA
GTGGGGTGGACTCGTTTTTGTGGCTGCTATGGATATTACATTAACGTTGT
TTTGACGTTATATGTCGCCCTGGACTCTCCTTTTCGGTTAACTGTTCATC
GATTAGCTTATGAATGATACCAATATGCCTCTTGTATAGGAATTTAGATT
TTGAACTTTTTTTTGTAGGTCGGAGAAAAGGAAAGAAGGAAGCACACGTC
TACCATTAGCTGATTGGAAGGTTTCTTCATCCCATTGTTATTATTTGACC
AGTCTGACTACTTTTTGACGTAAAAAGGCACAACAAGTTTTATACAGCCA
TAGTTGAATGAATTTATACAATAAAGATATTTAGGTATTTCCTATTGAAA
AGCACAAATTTGACGTCTTAAGTTAATGATACAATAACTTTACTTGGTCG
AGTAATGAATTTGTTTGAAGATCTGTCGTCAGATTTTGCTATTAGACGAG
GCAGAAAGTCGCTCGTCACAACATTAGACCTTAGTTTGAATCGACTTGAT
TCCATTGATTCCATTATAGAGGTCATTTCAATTGTTCTTTCTCTTAGTAC
CGTGCTGGATTCTCATTGTTTGTGATTGGTACATCGACCGCTATGTTGGT
GACCATTTGTGTCTTGTCACTTAGGTTTGTTATGTTATTGAAATGATTCT
CTTCAAATGATGGATTTTCTGCAGCCCCGCCTGTGGTTTCAGGTGGCCAA
CACCTGAGATTATTTTGGCTGAAATCTCCCATAGCCCCGTGTCTACTTAC
ATGTGAAATCAGCAAATTCTTATCTTATCTTCGTTATTACCCCAAATTAC
CAAAGCCTCATAAGATTCGTGAAGTTTCAACCTCAAGGGAATTTTTCTTA
CGGAAGACTTACTGAACTAAAAAAAAGACTATATGGGTTCACACTTCGTA
TGATTAAGTCTATTCGCAATATATTCTCCTTTTTCAGATCAGTTACATCC
ATCACATTGATGAAGAACAGCTCGAATGTTTTAATCAATACAATAACGCC
CGTAGGAACACCTTTCAAAACGATCACGCCCATTACTGAAGTCTCAGCCA
TTCAACAGCGCACAAGTTAGATTTACTGTGCCTTGTGTACATTTCTTCTC
GTTCATGTTTATACTTCTCAGCCATACAGATATTGAGCTTGTGGCAGTAT
TCATTTCCATTTATCGATCATGTATGCTTATTACTTCCGAAACAAAATCA
AAAAGTCACAAGATGGTGGTGCTGTACTGACATTTACAGTGTGTCCCAAA
AAGTGGACATAGGATCCACCCCCCACCCCCAGAGATTTGAGGGTACCTAA
AGAAAAAAAGTGTTAAAAAAGCCGGATACCTAGAAGTATTCTTAAATTTA
GGGGGTACCTGATATGTTTGGGGGTACCTGAATTTTCATTAGTGTGGGCG
GGGGCTGTTGTTTTTGTCTGAAGTCATCACCCTTGAATTCCTTGAAACCC
TTGAAACAACATTGAAAAGTCAATATTATTTTGGGGACCCTTGACATGCA
AGATTTATACCCTTGAAACCCTTGAAATGCCAAATTTTGTGGCCATTTTC
AGCCATTTTAACTTTCAGAAATACAAAATTTTTCCCATTGCGTGGGATAC
AAACATCGCAGTGACTTAAAAATGAGAGAACATACTTTTGGAACCCCTGA
GACTCAAGGGGATATTCCACGCTCATTCTTAGGGGGCTTACCTTTTAACC
CGTTAAGTGCCACTGGAATTATATGAGATTGGCAGGTCTGGGTGATAGAA
TGGGTGGTTGTAAAATTATCAATTACAATTATCAGCCAATTTAAGGACCC
TCCTTCACACAAAAATTGAAAATTCAACCTTTCTCCTTTTGTCGACAGAT
TTCCTTGAAATCTTTGAAAACTAGCAAAGATCAACTAAAAACCCTAGAAA
CCCTTGAAAGTTTGTAGTAAATAAAAATCTCTTGAAACCCTGGAAAATTA
TAGTAAAAAATGACACCCTTGAATTTGTTGAAAAAGAAGTGCTGGCTGCC
ATGGAAGTATTTTCCCAGGAATGACAAAAGAGCAAAAAATCCCTTTTTGT
ATTTTTAACAATAAAATAATTAAAAAGGGGGTAACTCAAAGTTGGGGGGT
TACTTTAGAATTCTAAAGATTTTTGGGGTACCAAAATGATTGGGGGTACC
TAAATCTTTTGTGGGTACCTGAACCCTGGACGACCCTATGGTGGACATTT
TTCATAAAGTGAAGTCCTCAAAACGCATTATCTAAAGTGGGTTTAGAATA
ATTGAAATAAGATTGAAATTCCCCGTCAATCAATAGATATTCCATTCCGA
AGATGATTGAATAGGTTTTTGAGATTAAAATATTAAGTATACAAGTCATA
AAGCCTCGCATGATTATGAGGATTTTACTTTATATAAAAATGTGTCCACT
TTTCTTTTTGGGACACACTGTATTTAACGAATTTTTCTTTACTAACTGCA
GTTTCGTAGAGATGTATGAATCCGACGACAACACTAAATTGAATTACAGT
GGACTTTTGTTCATTCAAACTTCTATTATTCGAATCTTTCTTTAATTCAA
ACTCTTTCTATAATTCGAACTTTTCTTCATTCCCCGTCAAGGAGAAACCC
TCGTGAAATACTTTCAATAATCCGAATCTTTCTATAATTCGAACAAAATA
GACTCCTCGTTCGAGTTCGAATTAGCGAGACTCACTGCACATTTTTTCAT
TTTCAGCGCAAGCTGGTAACATACCGTTGAAGTTGAAGAATCATCGTTTT
CATTTCTTGGTTGACAAAAGTGGACATTTTCTACAACCCACTCTCTTCGA
TCGGACAGTTGGTATAAGTAGAAATTTTGGACAGGTCAAAAAATGACATA
ATTATTTTAAAGATAGTCAAGGAATTTTGAATAAGTATTATTTTTTAAAT
AGAAATTTTTACTTTTTTGATTTTATTGTATATTTTTTCGTTTTCTGTTT
TGTAAGAAAATACCATAACCCAAGATTTTGAAATTTGAGTACGGAACCGC
AGCTTGATTGTTATGAGAACTAATAAAAATTAAAATTGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031399XLOC_031399Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049495-exon-scaffold_16-1575043694:87835..87967TCONS_00049495-exon-scaffold_16-1575043694:87835..87967Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1575043694:86930..87114TCONS_00049495-exon-scaffold_16-1575043694:86930..87114Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1575043694:80398..80449TCONS_00049495-exon-scaffold_16-1575043694:80398..80449Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1575043694:79994..80070TCONS_00049495-exon-scaffold_16-1575043694:79994..80070Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1575043694:79553..79680TCONS_00049495-exon-scaffold_16-1575043694:79553..79680Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1575043694:77579..77911TCONS_00049495-exon-scaffold_16-1575043694:77579..77911Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1510915933:87835..87967TCONS_00049495-exon-scaffold_16-1510915933:87835..87967Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1510915933:86930..87114TCONS_00049495-exon-scaffold_16-1510915933:86930..87114Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1510915933:80398..80449TCONS_00049495-exon-scaffold_16-1510915933:80398..80449Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1510915933:79994..80070TCONS_00049495-exon-scaffold_16-1510915933:79994..80070Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1510915933:79553..79680TCONS_00049495-exon-scaffold_16-1510915933:79553..79680Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1510915933:77579..77911TCONS_00049495-exon-scaffold_16-1510915933:77579..77911Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1491911889:87835..87967TCONS_00049495-exon-scaffold_16-1491911889:87835..87967Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1491911889:86930..87114TCONS_00049495-exon-scaffold_16-1491911889:86930..87114Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1491911889:80398..80449TCONS_00049495-exon-scaffold_16-1491911889:80398..80449Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1491911889:79994..80070TCONS_00049495-exon-scaffold_16-1491911889:79994..80070Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1491911889:79553..79680TCONS_00049495-exon-scaffold_16-1491911889:79553..79680Clytia hemisphaericaexon
TCONS_00049495-exon-scaffold_16-1491911889:77579..77911TCONS_00049495-exon-scaffold_16-1491911889:77579..77911Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_16supercontigscaffold_16:77579..87967 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.239959	0.101738	0.000118235	0.0595328	0	0	5.76132e-09	0	8.65701	5.07036	0	9.66331e-09	0.00177341	2.61349e-09	7.75279	1.91689	19.0324	19.825	5.29742	1.23665e-05	7.41007	8.03606	2.26385	6.92988	0	0	4.77979	6.85789	8.7287	4.69659
Blast
[Close]
BLAST of TCONS_00049495 vs. Swiss-Prot (Human)
Match: TM223 (Transmembrane protein 223 OS=Homo sapiens GN=TMEM223 PE=1 SV=1)

HSP 1 Score: 85.5001 bits (210), Expect = 1.188e-19
Identity = 57/179 (31.84%), Postives = 82/179 (45.81%), Query Frame = 2 
Query:  167 RDVVIYEHKKSTAFNKLLTLVGVGQWFVTGYMSLVMFQSMPAFFSWIPID--ESEKRKEGSTRLPLADWKYRAGFSLFVIGTSTAMLVTICVLSLRSVTSITLMKNSSNVLINTITPVGTPFKTITPITEVSAIQQRTTQAGNIPLKLKNHRFHFLVDKSGHFLQPTLFDRTVGISRNF 697
            RDV+++EH +   F  +L L   GQ      M++      P     +P+   ++E    G   L  A W+Y        IG    +L    + SLRSV S+ L      V + T  P G       P+ +VS +  R      +PLK+K  RF+FL+DK+GHF    LFD TVG  R+ 
Sbjct:   32 RDVLLFEHDRGRFFT-ILGLFCAGQGVFWASMAVAAVSRPP-----VPVQPLDAEVPNRGPFDLRSALWRYGLAVGCGAIGA--LVLGAGLLFSLRSVRSVVLRAGGQQVTLTTHAPFGLGAHFTVPLKQVSCMAHRGEVPAMLPLKVKGRRFYFLLDKTGHFPNTKLFDNTVGAYRSL 202
The following BLAST results are available for this feature:
BLAST of TCONS_00049495 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
TM2231.188e-1931.84Transmembrane protein 223 OS=Homo sapiens GN=TMEM2... [more]
back to top