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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049489 ID=TCONS_00049489|Name=TCONS_00049489|organism=Clytia hemisphaerica|type=transcript|length=2449bp
CTCTCTTTGTGATATTTCGTGGCGCGTGACAAATAAAATCAGAACATTCT
ATTTATTCAGGTAAAAGATTGTTTACaatcgaaatcaaaacaaatatggc
ggaCGAAGAATACAGTTTGTCAGAAtttgaagaagatgaagaaagtTTTG
AAGAATCTGATGGCGAATCttatgaaagtgaaaatgatcATGTAGATGAA
AGTAAAGACTTTTCAGAAACTGATAAAGAGCTTCATAATTTATTTGAAAG
TACAAATTTAGAGGATGTTGGTGGTGATGAATTTGCAATTCAAAGTCCTG
AAATTTTGTTAGCAACTTTGCGGAAGGAAGGAAGAATACAGTTTGTCAGA
AtttgaagaagatgaagaaagtTTTGAAGAATCTGATGGCGAATCttatg
aaagtgaaaatgatcATGTAGATGAAAGTAAAGACTTTTCAGAAACTGAT
AAAGAGCTTCATAATTTATTTGAAAGTACAAATTTAGAGGATGTTGGTGG
TGATGAATTTGCAATTCAAAGTCCTGAAATTTTGTTAGCAACTTTGCGGA
AGGAAGATGACACATACCTTGAATTTGAGTCACTAAAAGTAAACAGAATT
AAGTGTTTGGGACTATGTAAAATAATATTTGGACATGATGACTGGAGAAC
AGCAGAAGCACATATCCAACTTGCAGAAGCATACACCAAAGGGAAATGGT
ACCACCAGCAATCATTGAAACATGCAAATTTGGCACGTGACATTCTACTA
GCAGTTCAGAACAAAAACAAAGGTTCTGTTCCTTATCTCGAGCTTGAAAG
TCTTCTTCAAAACATGTACTTAATTCttggaaaaacaaatttaaagttAG
GAAGAGATAAAGCTTCAGAAAACTGTTTGTTAAAAGCAAAACTTGTTTCT
GACAAAACTCAGTCTGGGAGTATCAAATTTCAGCTTCTGCGTGTATCAAT
TTTATCAGCTTTGGCTGATACCTCAAGTAAGCttggaaattttggacaaa
GTACTGAATTTATTGAGGAAGCTTTAGAAAATGTCCATAAAATGGATGAC
ACTTATAAACACCTTGCAATAAACTTGTACAAACAAATGGTAAATATTGA
GCTGCTTAatgaaaagtatgcaaatctTGATGCTGCAAATGATTCAGCAC
AAAAAGCTTTGAGTATTTCTATTGATGAGAATGGACATGACTTCCAAGAG
ACAGCAGAACTTTTTACTTTACTTTGTAAAGTAGAATCACTCAGAGAAAT
TAGTGATTATGATAAAATCGAGAAAAATATCTCTGAAGCATTAGGAATCT
ATGAAACTCTTGATCTTAATGAAAACAAATATCAACTTTACAAATACATT
GCAAAATTCTGATGCAACAAGATAAACTGGTTGATGCAAAATCACTCTTA
GATGGAGCTATTGAAAAATGTGAGAATTGGTTTGGGGACTGTTCTCTACA
AACTGCAGAATTGTATGATCTCATGGGAAGTATACTGTTTGCACAAAAAA
GGTTACCAAATGCACTGTCTTACTTTACAAAGGCTTTTGAGATTTATGAT
GGGAAAAGAAAATGTctcaagaagaaagaaaaattaaaacatatcATTGA
GATCATTCGAAAGACTTGCAAAGATGATAAGCTGAAGACATCAGAGGAAC
GTTTGAAAGAGAGACCTAGGTTTGCATGATCTTTGTTTATGTAATTTAAC
TTATTGTTACACTTTATACACTAATAACTTTTTACACTaataacttttgt
tttgttaCACTAATTTCATACTAATTTTGCGTAAAATTATctttaggtgt
acaaactttcacgagcagaaactttcgcgaaatttgcgaaagtttatgct
cgtgaaaaattctcaaaaaaattggaagTCTATAAAACTTAGCGAGCCTC
ACCAACCagaaaccgggatttttcattccatttctataattgcgtagaaa
aaacgcgggtgacgccTATACTACAGGCTAATAAAACCTCGAAATTGCGA
AATCGTAATAATTATCAAATGTTCGGcatatttttatcatttaaTGCCTT
TTTAATGTCGTTGGGCGGCCGTCTgcctttccttggacacaggaacgcgg
taATAGTACATAGAAAATACAAATTACTGCGGGAGATTggtttggaaaga
aaaaatagCATTCAGCAAACGTAGTGAGCCGATTGCAAGCGTAAGCTGTA
GCGAAAAACAACGACGTTGTTTACTAGTCTaatttttatccaacgattcg
cgaaagtttatgcttgcgaaaaacattttttcctaaaattcgcgaaagta
aatgtcataGATTTCGTCAGTTTCTCacctcgcaaaagtttctgctcgcg
aaagtttgtatgcCTAAATATTACATATTTGTAAATGAAGAATTAAATac
tctttaaaagtttttttaagattacaaaaaatataaacataaaaacGAG Run BLAST on NCBI protein sequence of TCONS_00049489-protein >TCONS_00049489-protein ID=TCONS_00049489-protein|Name=TCONS_00049489-protein|organism=Clytia hemisphaerica|type=polypeptide|length=182bp
MYLILGKTNLKLGRDKASENCLLKAKLVSDKTQSGSIKFQLLRVSILSAL
ADTSSKLGNFGQSTEFIEEALENVHKMDDTYKHLAINLYKQMVNIELLNE
KYANLDAANDSAQKALSISIDENGHDFQETAELFTLLCKVESLREISDYD
KIEKNISEALGIYETLDLNENKYQLYKYIAKF Run BLAST on NCBI transcript from alignment at scaffold_16:22541..25375- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049489 ID=TCONS_00049489|Name=TCONS_00049489|organism=Clytia hemisphaerica|type=transcript|length=2835bp|location=Sequence derived from alignment at scaffold_16:22541..25375- (Clytia hemisphaerica)
CTCTCTTTGTGATATTTCGTGGCGCGTGACAAATAAAATCAGAACATTCT
ATTTATTCAGGTAAAAGATTGTTTACAATCGAAATCAAAACAAATATGGC
GGACGAAGAATACAGTTTGTCAGAATTTGAAGAAGATGAAGAAAGTTTTG
AAGAATCTGATGGCGAATCTTATGAAAGTGAAAATGATCATGTAGATGAA
AGTAAAGACTTTTCAGAAACTGATAAAGAGCTTCATAATTTATTTGAAAG
TACAAATTTAGAGGATGTTGGTGGTGATGAATTTGCAATTCAAAGTCCTG
AAATTTTGTTAGCAACTTTGCGGAAGGAAGATGACACATACCTTGAATTT
GAGTCACTAAAAGTAAACAGAATTAAGTGTTTGGGACTATGTAAAATAAT
ATTTGGACATGATGACTGGAGAACAGCAGAAGCACATATCCAACTTGCAG
AAGCATACACCAAAGGGAAATGGTNATTACCTGAAGTGACTCCTATACTT
GAAATGTGCTTACGCGGTCATTCTGAGTATCGAATCTCTATTTGTGATAT
TTCGTGGCGCGTGACAAATAAAATCAGAACATTCTATTTATTCAGGTAAA
AGATTGTTTACAATCGAAATCAAAACAAATATGGCGGACGAAGAATACAG
TTTGTCAGAATTTGAAGAAGATGAAGAAAGTTTTGAAGAATCTGATGGCG
AATCTTATGAAAGTGAAAATGATCATGTAGATGAAAGTAAAGACTTTTCA
GAAACTGATAAAGAGCTTCATAATTTATTTGAAAGTACAAATTTAGAGGA
TGTTGGTGGTGATGAATTTGCAATTCAAAGTCCTGAAATTTTGTTAGCAA
CTTTGCGGAAGGAAGATGACACATACCTTGAATTTGAGTCACTAAAAGTA
AACAGAATTAAGTGTTTGGGACTATGTAAAATAATATTTGGACATGATGA
CTGGAGAACAGCAGAAGCACATATCCAACTTGCAGAAGCATACACCAAAG
GGAAATGGTACCACCAGCAATCATTGAAACATGCAAATTTGGCACGTGAC
ATTCTACTAGCAGTTCAGAACAAAAACAAAGGTTCTGTTCCTTATCTCGA
GCTTGAAAGTCTTCTTCAAAACATGTACTTAATTCTTGGAAAAACAAATT
TAAAGTTAGGAAGAGATAAAGCTTCAGAAAACTGTTTGTTAAAAGCAAAA
CTTGTTTCTGACAAAACTCAGTCTGGGAGTATCAAATTTCAGCTTCTGCG
TGTATCAATTTTATCAGCTTTGGCTGATACCTCAAGTAAGCTTGGAAATT
TTGGACAAAGTACTGAATTTATTGAGGAAGCTTTAGAAAATGTCCATAAA
ATGGATGACACTTATAAACACCTTGCAATAAACTTGTACAAACAAATGGT
AAATATTGAGCTGCTTAATGAAAAGTATGCAAATCTTGATGCTGCAAATG
ATTCAGCACAAAAAGCTTTGAGTATTTCTATTGATGAGAATGGACATGAC
TTCCAAGAGACAGCAGAACTTTTTACTTTACTTTGTAAAGTAGAATCACT
CAGAGAAATTAGTGATTATGATAAAATCGAGAAAAATATCTCTGAAGCAT
TAGGAATCTATGAAACTCTTGATCTTAATGAAAAGCAAATATCGACTTTA
CAAATACATTGTAAGATTCTGATGCAACAGNATCTACGAAACTCTTGATC
TTAATGAAAAGCAAATATCAACTTTACAAATACATTGCAAAATTCTGATG
CAACAAGATAAACTGGTTGATGCAAAATCACTCTTAGATGGAGCTATTGA
AAAATGTGAGAATTGGTTTGGGGACTGTTCTCTACAAACTGCAGAATTGT
ATGATCTCATGGGAAGTATACTGTTTGCACAAAAAAGGTTACCAAATGCA
CTGTCTTACTTTACAAAGGCTTTTGAGATTTATGATGGGAAAAGAAAATG
TCTCAAGAAGAAAGAAAAATTAAAACATATCATTGAGATCATTCGAAAGA
CTTGCAAAGATGATAAGCTGAAGACATCAGAGGAACGTTTGAAAGAGAGA
CCTAGGTTTGCATGATCTTTGTTTATGTAATTTAACTTATTGTTACACTT
TATACACTAATAACTTTTTACACTAATAACTTTTGTTTTGTTACACTAAT
TTCATACTAATTTTGCGTAAAATTATCTTTAGGTGTACAAACTTTCACGA
GCAGAAACTTTCGCGAAATTTGCGAAAGTTTATGCTCGTGAAAAATTCTC
AAAAAAATTGGAAGTCTATAAAACTTAGCGAGCCTCACCAACCAGAAACC
GGGATTTTTCATTCCATTTCTATAATTGCGTAGAAAAAACGCGGGTGACG
CCTATACTACAGGCTAATAAAACCTCGAAATTGCGAAATCGTAATAATTA
TCAAATGTTCGGCATATTTTTATCATTTAATGCCTTTTTAATGTCGTTGG
GCGGCCGTCTGCCTTTCCTTGGACACAGGAACGCGGTAATAGTACATAGA
AAATACAAATTACTGCGGGAGATTGGTTTGGAAAGAAAAAATAGCATTCA
GCAAACGTAGTGAGCCGATTGCAAGCGTAAGCTGTAGCGAAAAACAACGA
CGTTGTTTACTAGTCTAATTTTTATCCAACGATTCGCGAAAGTTTATGCT
TGCGAAAAACATTTTTTCCTAAAATTCGCGAAAGTAAATGTCATAGATTT
CGTCAGTTTCTCACCTCGCAAAAGTTTCTGCTCGCGAAAGTTTGTATGCC
TAAATATTACATATTTGTAAATGAAGAATTAAATACTCTTTAAAAGTTTT
TTTAAGATTACAAAAAATATAAACATAAAAACGAG Coding sequence (CDS) from alignment at scaffold_16:22541..25375- >TCONS_00049489 ID=TCONS_00049489|Name=TCONS_00049489|organism=Clytia hemisphaerica|type=CDS|length=1098bp|location=Sequence derived from alignment at scaffold_16:22541..25375- (Clytia hemisphaerica)
CAAATATCAACTTTACAAATACATTGCAAAATTCTGAATGTACTTAATTC
TTGGAAAAACAAATTTAAAGTTAGGAAGAGATAAAGCTTCAGAAAACTGT
TTGTTAAAAGCAAAACTTGTTTCTGACAAAACTCAGTCTGGGAGTATCAA
ATTTCAGCTTCTGCGTGTATCAATTTTATCAGCTTTGGCTGATACCTCAA
GTAAGCTTGGAAATTTTGGACAAAGTACTGAATTTATTGAGGAAGCTTTA
GAAAATGTCCATAAAATGGATGACACTTATAAACACCTTGCAATAAACTT
GTACAAACAAATGGTAAATATTGAGCTGCTTAATGAAAAGTATGCAAATC
TTGATGCTGCAAATGATTCAGCACAAAAAGCTTTGAGTATTTCTATTGAT
GAGAATGGACATGACTTCCAAGAGACAGCAGAACTTTTTACTTTACTTTG
TAAAGTAGAATCACTCAGAGAAATTAGTGATTATGATAAAATCGAGAAAA
ATATCTCTGAAGCATTAGGAATCTATGAAACTCTTGATCTTAATGAAAAC
AAATATCAACTTTACAAATACATTGCAAAATTCTGAATGTACTTAATTCT
TGGAAAAACAAATTTAAAGTTAGGAAGAGATAAAGCTTCAGAAAACTGTT
TGTTAAAAGCAAAACTTGTTTCTGACAAAACTCAGTCTGGGAGTATCAAA
TTTCAGCTTCTGCGTGTATCAATTTTATCAGCTTTGGCTGATACCTCAAG
TAAGCTTGGAAATTTTGGACAAAGTACTGAATTTATTGAGGAAGCTTTAG
AAAATGTCCATAAAATGGATGACACTTATAAACACCTTGCAATAAACTTG
TACAAACAAATGGTAAATATTGAGCTGCTTAATGAAAAGTATGCAAATCT
TGATGCTGCAAATGATTCAGCACAAAAAGCTTTGAGTATTTCTATTGATG
AGAATGGACATGACTTCCAAGAGACAGCAGAACTTTTTACTTTACTTTGT
AAAGTAGAATCACTCAGAGAAATTAGTGATTATGATAAAATCGAGAAAAA
TATCTCTGAAGCATTAGGAATCTATGAAACTCTTGATCTTAATGAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049489-exon-scaffold_16-1575043694:25046..25375 | TCONS_00049489-exon-scaffold_16-1575043694:25046..25375 | Clytia hemisphaerica | exon |
| TCONS_00049489-exon-scaffold_16-1575043694:23742..24736 | TCONS_00049489-exon-scaffold_16-1575043694:23742..24736 | Clytia hemisphaerica | exon |
| TCONS_00049489-exon-scaffold_16-1575043694:22541..23664 | TCONS_00049489-exon-scaffold_16-1575043694:22541..23664 | Clytia hemisphaerica | exon |
| TCONS_00049489-exon-scaffold_16-1510915933:25046..25375 | TCONS_00049489-exon-scaffold_16-1510915933:25046..25375 | Clytia hemisphaerica | exon |
| TCONS_00049489-exon-scaffold_16-1510915933:23742..24736 | TCONS_00049489-exon-scaffold_16-1510915933:23742..24736 | Clytia hemisphaerica | exon |
| TCONS_00049489-exon-scaffold_16-1510915933:22541..23664 | TCONS_00049489-exon-scaffold_16-1510915933:22541..23664 | Clytia hemisphaerica | exon |
| TCONS_00049489-exon-scaffold_16-1491911889:25046..25375 | TCONS_00049489-exon-scaffold_16-1491911889:25046..25375 | Clytia hemisphaerica | exon |
| TCONS_00049489-exon-scaffold_16-1491911889:23742..24736 | TCONS_00049489-exon-scaffold_16-1491911889:23742..24736 | Clytia hemisphaerica | exon |
| TCONS_00049489-exon-scaffold_16-1491911889:22541..23664 | TCONS_00049489-exon-scaffold_16-1491911889:22541..23664 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_16 | supercontig | scaffold_16:22541..25375 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR011990 | TPR-like_helical_dom |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0005515 | protein binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0005515 |
protein binding |
Blast
The following BLAST results are available for this feature:
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