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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00004850 ID=TCONS_00004850|Name=TCONS_00004850|organism=Clytia hemisphaerica|type=transcript|length=1440bp
TTTTGAACTTTTATGACTTTGGTTGGCTGTTTACGAACAGAGTGTTGAAC
AAGGGTTTTAGAAACATGCATTTGACATGGAAATTAAAGCGAAAGCTAAC
AGTATCGATTGGCATAATATACCAATGTCTTTATTGCTTTGAGTACTCAT
CGACTGCAATTTCTGCTTTATATTActataaaaactctttcaatgTCGAA
AATCCTAAATTTTATTATGGATGCTCAATGGCAGCAATATTTCTCAGCGC
TATCATTTCAAACTACATATGTGGACGAGTGATGGATAAGACAAGAGATT
TAAGGAAGGTTGTATTGAATTTATCGTTATGCAACATTCTTGGTAATCTA
ACATATACACTGACTTGGTCGCCCTGGCTCNATGGATAAGACAAGAGATT
TAAGGAAGATTGTATTGACTTTATCGTTATTTAACATTATTGGTAATCTA
ACATATACACTGACTTGGTCGCCCTGGCTTCCTGTTTTGGGCCGCTTTGT
GTGTGGTATTGCAACTGGAATTGGTGCTGCAGTTACAGGAGAGTTCAATC
GCATTTATAAGAAGAAGAAGGAGTTGGCACAAATGCTATCGTTGAAAGAA
CTTATCTCGACGACCTGTATGGCACTCGCACCATGCACGCCTTTGTTTTT
CTATGGCATTCATTTCCAAATCGGTTCGTGGAAAATCAATCAAGATAATT
TCATTGGCATATTTCTTGCTTCAATTACGTCATTCATGTGGATCTTCTCT
TATTTCGGGCTACACAATTTGACCAAGGATCCGGAAAGTCCTTTCTCTGA
TTGTAACACTATAAACAAGAATAATAGTAATGCAAAACCATCCAATGATG
ACAAACTATGGACAACAAAGGACATTCTAAAGGATCGACATCTAATGTTA
TTGTTGGTCGCTGAAGGGTTTCTAGCTTTTCAATACTTTCAAATGGAGCT
CGAAATCAATTTGATGGCAGTTGAATATTTCCATTGGCCAATGCTGCAAC
TTGGTTTAATCACAAGTATTGCTATTATTGTGTCTACTGGAACTTTGTAT
TTGACTCAGAAGAAACTCATGGGTTCTGCTTTGAATATATTCTTTCTCTA
TGTTGTTGGTTTGGTAATTATTGGAGTTCTAGAATCCATTATTTTATTTG
GTACTGTTACAAAGTTCGATAAACCATTGCAGCATGCAGTTATCTTCACC
TCCTTATTCTTTAACATCGTTCAGGGTTTCGGATCGACAGTTTACTGTCA
ATGGTTGATGTTCTCCATAACTCCTTCACATTCCTCGAGTATCGTCGAAT
CCCATCGATATATCATCGCCAGAGCTTTGGCGTGCTTGGCTTTTTTTACT
GCCAGTTatgtttatgatattttgaagTATATAATTCCAGTCTATAGTTT
AATtacttatattttaattttgttattgttgtcgAATCGG Run BLAST on NCBI transcript from alignment at sc0000049:203050..205357+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00004850 ID=TCONS_00004850|Name=TCONS_00004850|organism=Clytia hemisphaerica|type=transcript|length=2308bp|location=Sequence derived from alignment at sc0000049:203050..205357+ (Clytia hemisphaerica)
TTTTGAACTTTTATGACTTTGGTTGGCTGTTTACGAACAGAGTGTTGAAC
AAGGGTTTTAGAAACATGCATTTGACATGGAAATTAAAGCGAAAGCTAAC
AGTATCGATTGGCATAATATACCAATGTCTTTATTGCTTTGAGTACTCAT
CGACTGCAATTTCTGCTTTATATTActataaaaactctttcaatgTCGAA
AATCCTAAATTTTATTATGGATGCTCAATGGCAGCAATATTTCTCAGCGC
TATCATTTCAAACTACATATGTGGACGAGTGATGGATAAGACAAGAGATT
TAAGGAAGGTTGTATTGAATTTATCGTTATGCAACATTCTTGGTAATCTA
ACATATACACTGACTTGGTCGCCCTGGCTCNATGGATAAGACAAGAGATT
TAAGGAAGATTGTATTGACTTTATCGTTATTTAACATTATTGGTAATCTA
ACATATACACTGACTTGGTCGCCCTGGCTTCCTGTTTTGGGCCGCTTTGT
GTGTGGTATTGCAACTGGAATTGGTGCTGCAGTTACAGGTAAATAATTGA
TACTCGTTGGGTATCATACTTTcaacccctgtctcagtgacccggaaACG
TTAAAACCCACCGGGGTGGCTGTATGAAAATAGTAAATTTCACCgggtct
gaaaatttctatcatCGGGGTTAGGGTCAAAATATGCCAGAAATTTTGTC
ATCGAAAATAGTTCCGTCTATTGGGTGGTGTGTTTTAACATCGATGGTTT
TAAGTGAATTTCCACTTCTTTCTGCACCAAAAAATAAatgagttttattt
tttgatgcaGTTTGATGGCTCCctgaaaattctttgaaaaaaaacaacat
acaaGTGGCTTGCACCGACTGGAACAAATCTCGAATTGATTAGAAGCATT
TTTTTAAAGGTATCGAAAAACTGAAGTTATATGGATAAAAAGATGCCTGT
TTTGGGCCGCTTTGTGTGCGGTATTGCAGCGGGAATTGGAGTTTCATTAA
TAAGTACATTTTaagggaaaatttcaaaaatgaaattcacTTGGCATAAT
ACCTTTAGGATGGCAGTTCAAACCTAAATAGTCTTGCAAAGTTCTTACAC
CGGTTTATACAGTCCCCGAGCGAAACAGTCAAGTCGGTTCGTGGATCCTT
ATAATCCCGGAGAACTAATGAGAGAATACTGTCTAAAATCATCCTAGAAT
ACTAAGAAAATTATTGACTCCATCGATTTAGCCCgaggtccacttaaagc
ttttttatagactggatagCGCGATTAAGGGATTACTTCACTGGActcgt
catcaaaaattattagaaagcaaagttcagccagaagtagactctagtct
actaTCGATTTAGTTTTACAAAATACTTCATTTATGTTTCATTCTTCTTT
TCCCAGGAGAGTTCAATCGCATTTATAAGAAGAAGAAGGAGTTGGCACAA
ATGCTATCGTTGAAAGAACTTATCTCGACGACCTGTATGGCACTCGCACC
ATGCACGCCTTTGTTTTTCTATGGCATTCATTTCCAAATCGGTTCGTGGA
AAATCAATCAAGATAATTTCATTGGCATATTTCTTGCTTCAATTACGTCA
TTCATGTGGATCTTCTCTTATTTCGGGCTACACAATTTGACCAAGGATCC
GGAAAGTCCTTTCTCTGATTGTAACACTATAAACAAGAATAATAGTAATG
CAAAACCATCCAATGATGACAAACTATGGACAACAAAGGACATTCTAAAG
GATCGACATCTAATGTTATTGTTGGTCGCTGAAGGGTTTCTAGCTTTTCA
ATACTTTCAAATGGAGCTCGAAATCAATTTGATGGCAGTTGAATATTTCC
ATTGGCCAATGCTGCAACTTGGTTTAATCACAAGTATTGCTATTATTGTG
TCTACTGGAACTTTGTATTTGACTCAGAAGAAACTCATGGGTTCTGCTTT
GAATATATTCTTTCTCTATGTTGTTGGTTTGGTAATTATTGGAGTTCTAG
AATCCATTATTTTATTTGGTACTGTTACAAAGTTCGATAAACCATTGCAG
CATGCAGTTATCTTCACCTCCTTATTCTTTAACATCGTTCAGGGTTTCGG
ATCGACAGTTTACTGTCAATGGTTGATGTTCTCCATAACTCCTTCACATT
CCTCGAGTATCGTCGAATCCCATCGATATATCATCGCCAGAGCTTTGGCG
TGCTTGGCTTTTTTTACTGCCAGTTatgtttatgatattttgaagTATAT
AATTCCAGTCTATAGTTTAATtacttatattttaattttgttattgttgt
cgAATCGG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00004850-exon-sc0000049-1491911889:203050..203587 | TCONS_00004850-exon-sc0000049-1491911889:203050..203587 | Clytia hemisphaerica | exon |
| TCONS_00004850-exon-sc0000049-1510915933:203050..203587 | TCONS_00004850-exon-sc0000049-1510915933:203050..203587 | Clytia hemisphaerica | exon |
| TCONS_00004850-exon-sc0000049-1575043694:203050..203587 | TCONS_00004850-exon-sc0000049-1575043694:203050..203587 | Clytia hemisphaerica | exon |
| TCONS_00004850-exon-sc0000049-1491911889:204456..205357 | TCONS_00004850-exon-sc0000049-1491911889:204456..205357 | Clytia hemisphaerica | exon |
| TCONS_00004850-exon-sc0000049-1510915933:204456..205357 | TCONS_00004850-exon-sc0000049-1510915933:204456..205357 | Clytia hemisphaerica | exon |
| TCONS_00004850-exon-sc0000049-1575043694:204456..205357 | TCONS_00004850-exon-sc0000049-1575043694:204456..205357 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| sc0000049 | supercontig | sc0000049:203050..205357 + |
Blast
The following BLAST results are available for this feature:
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