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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049391 ID=TCONS_00049391|Name=TCONS_00049391|organism=Clytia hemisphaerica|type=transcript|length=1065bp
attttttgcAAGGATCAGCTCAAAAGTTTTTCTCATCAATTTTCGACAAT
TTTATACGTGTAAACATTTTACGGAAAAGGGAACCACGAAATAAAATACT
TCCTGACGAAAGGACCCTTTGGAGATGCAAAGATCTCACCTGAAACACAA
CGCTTCGAGTTTCGCGATGACAACAAAGAGTCAGACTATCATCACATCGC
GCTGACAGAAGAGACCGATTGTAACCGCCTGCTAGCCGCACGCACAATCA
ATTTCCGAATCATGATGTTTTTAGTCAAGAAGTGaacaaaaaagcttttc
tttgTGTGTgtgaaaactgaaaatttgtcATGTGAATTTTTTACAAGGCT
GTGCAAATAGTTTCACGGTTTCACTTTTAGATTCACATTTCTTTATTGTA
AAAGTGCCATTCTTTTGTTTAACGCATCTTTTGAACTgaattaataaaaa
tattacTTTCAAACTCCTGGATTTACAAAAGTCAGCTAgaacttttgttt
taaagttaaaGATATTTCTTTCTTCCAGCCTTTTGAtgtaattacacgtt
tttttataagaacatccaaaatctttgaagccttctgatgttcttagctt
tttgagatttaagcctaaaaatgttcttaattttgccATTTTACGAATAT
TTTTGCGCAATTTCTAAGAAGTTAGGTGTTTCAGAGTcaatgaagcctta
aaatgttcttagcttattcttaatattttgaccatcgaagtcttatgttc
ttatattgttcttataaaaaaaatgtgtaaaaagcGTAGAATTTCTAAGA
GTCACACATACTTAATGTATAACATAATATGTATTGTTGAaagttatata
tatatatatattacgAGGAGAAATGCCTATTTATTTTATACAAGAAAATA
ACATGCAATTATTTTAAGTAATACAAAATTTAATTGCTTAATGACCCACC
CTGTGTAAATAGATTTAGAGAATATAGTTGCTTATTTTGAAACTCAgtct
tttgattatttttaagtAAGAATATTGTGttttagattttagattttttt
tactaCTGAATATAA Run BLAST on NCBI transcript from alignment at scaffold_156:19904..21251+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049391 ID=TCONS_00049391|Name=TCONS_00049391|organism=Clytia hemisphaerica|type=transcript|length=1348bp|location=Sequence derived from alignment at scaffold_156:19904..21251+ (Clytia hemisphaerica)
attttttgcAAGGATCAGCTCAAAAGTTTTTCTCATCAATTTTCGACAAT
TTTATACGTGTAAACATTTTACGGTAAGAGTTATAAAAGggtaatcagat
ggtttgagatatttggcctgCAAAAACCTTCTGGGGTCCTGAGTAGAACC
TCTAAGAATTTGTAGTTTTTCCCAAAGTTCTTGTGTTTTGCACGGTTTCT
TGCgtttaaattctattgttttcttactAATGGTTTAAAAATTAGATATC
TCGGCAAATATCACAAACCTTCTGGTAATCCCTTTAAGAATGCCTTCAAT
ATGTCTGCAACTATTGACCTTAAAATATTAAGTCTAACTATACTCTTATT
TTTCAGGAAAAGGGAACCACGAAATAAAATACTTCCTGACGAAAGGACCC
TTTGGAGATGCAAAGATCTCACCTGAAACACAACGCTTCGAGTTTCGCGA
TGACAACAAAGAGTCAGACTATCATCACATCGCGCTGACAGAAGAGACCG
ATTGTAACCGCCTGCTAGCCGCACGCACAATCAATTTCCGAATCATGATG
TTTTTAGTCAAGAAGTGaacaaaaaagcttttctttgTGTGTgtgaaaac
tgaaaatttgtcATGTGAATTTTTTACAAGGCTGTGCAAATAGTTTCACG
GTTTCACTTTTAGATTCACATTTCTTTATTGTAAAAGTGCCATTCTTTTG
TTTAACGCATCTTTTGAACTgaattaataaaaatattacTTTCAAACTCC
TGGATTTACAAAAGTCAGCTAgaacttttgttttaaagttaaaGATATTT
CTTTCTTCCAGCCTTTTGAtgtaattacacgtttttttataagaacatcc
aaaatctttgaagccttctgatgttcttagctttttgagatttaagccta
aaaatgttcttaattttgccATTTTACGAATATTTTTGCGCAATTTCTAA
GAAGTTAGGTGTTTCAGAGTcaatgaagccttaaaatgttcttagcttat
tcttaatattttgaccatcgaagtcttatgttcttatattgttcttataa
aaaaaatgtgtaaaaagcGTAGAATTTCTAAGAGTCACACATACTTAATG
TATAACATAATATGTATTGTTGAaagttatatatatatatatattacgAG
GAGAAATGCCTATTTATTTTATACAAGAAAATAACATGCAATTATTTTAA
GTAATACAAAATTTAATTGCTTAATGACCCACCCTGTGTAAATAGATTTA
GAGAATATAGTTGCTTATTTTGAAACTCAgtcttttgattatttttaagt
AAGAATATTGTGttttagattttagattttttttactaCTGAATATAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049391-exon-scaffold_156-1491911889:19904..19976 | TCONS_00049391-exon-scaffold_156-1491911889:19904..19976 | Clytia hemisphaerica | exon |
| TCONS_00049391-exon-scaffold_156-1510915933:19904..19976 | TCONS_00049391-exon-scaffold_156-1510915933:19904..19976 | Clytia hemisphaerica | exon |
| TCONS_00049391-exon-scaffold_156-1575043694:19904..19976 | TCONS_00049391-exon-scaffold_156-1575043694:19904..19976 | Clytia hemisphaerica | exon |
| TCONS_00049391-exon-scaffold_156-1491911889:20260..21251 | TCONS_00049391-exon-scaffold_156-1491911889:20260..21251 | Clytia hemisphaerica | exon |
| TCONS_00049391-exon-scaffold_156-1510915933:20260..21251 | TCONS_00049391-exon-scaffold_156-1510915933:20260..21251 | Clytia hemisphaerica | exon |
| TCONS_00049391-exon-scaffold_156-1575043694:20260..21251 | TCONS_00049391-exon-scaffold_156-1575043694:20260..21251 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_156 | supercontig | scaffold_156:19904..21251 + |
Blast
The following BLAST results are available for this feature:
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