TCONS_00049366 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049366
Unique NameTCONS_00049366
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length935

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049366 ID=TCONS_00049366|Name=TCONS_00049366|organism=Clytia hemisphaerica|type=transcript|length=935bp
GCAAAAACTGCTTCTACCAAGGCTTAATAACTTAAGCAAAGCATTCTCGG
ATGCCTTCAAACTCAAAACGCACTTGACTGGAGCACTCGACCATGGGCAG
AAACCATTTTGCAAGCTTGACCTGTTTCAGTGGCCACATGATTCGAACTT
GACGTTGAACATTCTTGTTCTGATATTGAGCAGACGAACTAGTCTACCGG
ACACACTTTATCTCCAAATGGACAACTGTTACCGTGAATGTAAAAACCAA
TACGTCGTATCGTTCCTTGCGCTTCTTGTCCATCTTGAAGTTTTCAAAAA
GATCAAGTTGAACTTCATGATGaaaggACATACACATGATGACATTGATC
AATTCTTTTCACGGATTTCAACCAACCCAAGCAACCTACTCAGGATCTTA
TGCGTGTTATCAGGGAAACCTACAAGCCAATGCCTGAAATATCATTGATG
GAGTACATGTACAATATTCGGTAATGGTTGGGTCCAATGATGAAAGGCCT
TCACAATATTGTGTACCCGCACTGTTTCAAGATCGTAAAGTCCAACGGTG
TGGCATCAATGAAATACAAAAACTGGGCCAACGACAAAGAATGGTTGCCA
CTTTACGAGacactaaaaattttaaatGAGGAAAACATCAACCTTCAAAT
CACACCAAAGCTTTTGCCAGTTAACAAAGATTGCCAAGACTTTGCACGCC
TGAAGAACGATATTGGAAAGTACTACCGAGAATCTCGTCTTTTCAAGGTC
GAACTGAAAGAGGAGTGGAGTGACTTGTTAAATATCGAGAGTGAGTTGTA
CCAATACCAAGGTGAAACTCAATGGGGGCTTCCGAAATTGCTGGAAAAGA
CCAATCCAACGGACTTCATAGCCTGGGactccaagctcataatcttagaa
aaaacaaaaaatacctcacctcacaaagttctaaa
Run BLAST on NCBI

transcript from alignment at scaffold_155:157474..159575-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049366 ID=TCONS_00049366|Name=TCONS_00049366|organism=Clytia hemisphaerica|type=transcript|length=2102bp|location=Sequence derived from alignment at scaffold_155:157474..159575- (Clytia hemisphaerica)
GCAAAAACTGCTTCTACCAAGGCTTAATAACTTAAGCAAAGCATTCTCGG
ATGCCTTCAAACTCAAAACGCACTTGACTGGAGCACTCGACCATGGGCAG
AAACCATTTTGCAAGCTTGACCTGTTTCAGTGGCCACATGATTCGAACTT
GACGTTGAACATTCTTGTTCTGATATTGAGCAGACGAACTAGTCTACCGG
ACACACTTTATCTCCAAATGGACAACTGTTACCGTGAATGTAAAAACCAA
TACGTCGTATCGTTCCTTGCGCTTCTTGTCCATCTTGAAGTTTTCAAAAA
GGTATGGTGTATTGGTTTTTTTTTTCGTTTTCTATGACAATCTTTAAAAA
TTATCCTCTCTTCGATTAAAAATGTTTTTTTGGATTTGTAATATATGTTT
TGCGTTCTTAACTGACTAAAATCTTGTCTTAATTATAGATCAAGTTGAAC
TTCATGATGAAAGGGTAAAAATATTTCATATATTATTATTTGCCCATGAA
ATGACAACTAGCTATTAGCCTAATCCACAACTGACTACAATGGTTATTAT
TTAGTTATTTTTGGAGCGAATATAGTGGCTTTATGATTGAATTGTGAGCT
GAAAAGAAATTCTCTTCGGTGATATACTAATAAGATGCCGAAAGTCACCC
TAGAATTAAAAACTTGTCCTTTTCTAGCATTTTCTTTTTCAATACCATTC
AGACATACACATGATGACATTGATCAATTCTTTTCACGGATTTCAACCAA
CCCAAGCAACCTACTCAGGGTAAATAGTAAATAATTTCGATTTCGTTGAT
TTTGGGAGTGGTGGGGATCAATCACCCTAGACGTTGGTAGTTTTTAAAAT
ACTTTTCCAATAAAAAAAATCACCAGTATGCACGAAATGTAGTAGTCTCA
ATAATGGCTCCTTAACTCAAACGATCCTTTTGGTACCGTCAGAACAAAGA
AAATCTTGTAAGTCAAATGGTACGGGGCCAGAATAATGTATATTTGTGTG
TGTATTTTTTAAGCCTCCAAATAGTTAGCACTCTATCTCAGATAATCAAT
ACCTATCACTGATTCACCAGAAAACAATCTATAGCGAGTTTATGTATCCC
GTATTTTCAATGGCGGCGACGGTTAGTTTTTTATTTTTCTCGGCTGAGGA
CTACGGTAAATCAGCGCTTTTTCCGTAATCGATTTTGCGTGTCAAAAATT
GTTTCATTACAAAAGGTAGATACATAAACTCGCTTAGGCTGCGGTGTGGG
GTGGAAATATTTGAAGATAATAGTTCGGTAATCTCATTTTAGATCTTATG
CGTGTTATCAGGGAAACCTACAAGCCAATGCCTGAAATATCATTGATGGA
GTACATGTACAATATTCGGTAATGGTTGGGTCCAATGATGAAAGGCCTTC
ACAATATTGTGTACCCGCACTGTTTCAAGATCGTAAAGTCCAACGGTGTG
GCATCAATGAAATACAAAAACTGGGCCAACGACAAAGAATGGTTGCCACT
TTACGAGACACTAAAAATTTTAAATGTAAGTTATATAAGCATCGACTTAC
AGTATCATTATAATAAAGGTGTGGACTGAGGTTCGGCAAAAAGATTCTAA
GTGAGACATTTTGATTTGTGGACTGCAAATATAATTCGAAAGATTTGCCA
TAAAGACTGCCTCTGAGAAGAAATGTTCATTACCTATCCGTGTTTTTGCG
ATCATGAGACTGAGACATATAGAAGTAAAAATAAGATAACTGTAGATCCC
AGTATTCTCCATTTTATGAAACTCTTTTTTTACTGTTCATATAGGAGGAA
AACATCAACCTTCAAATCACACCAAAGCTTTTGCCAGTTAACAAAGATTG
CCAAGACTTTGCACGCCTGAAGAACGATATTGGAAAGTACTACCGAGAAT
CTCGTCTTTTCAAGGTCGAACTGAAAGAGGAGTGGAGTGACTTGTTAAAT
ATCGAGAGTGAGTTGTACCAATACCAAGGTGAAACTCAATGGGGGCTTCC
GAAATTGCTGGAAAAGACCAATCCAACGGACTTCATAGCCTGGGACTCCA
AGCTCATAATCTTAGAAAAAACAAAAAATACCTCACCTCACAAAGTTCTA
AA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031334XLOC_031334Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049366-exon-scaffold_155-1575043694:159275..159575TCONS_00049366-exon-scaffold_155-1575043694:159275..159575Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1575043694:159112..159137TCONS_00049366-exon-scaffold_155-1575043694:159112..159137Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1575043694:158807..158873TCONS_00049366-exon-scaffold_155-1575043694:158807..158873Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1575043694:158051..158283TCONS_00049366-exon-scaffold_155-1575043694:158051..158283Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1575043694:157474..157781TCONS_00049366-exon-scaffold_155-1575043694:157474..157781Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1510915933:159275..159575TCONS_00049366-exon-scaffold_155-1510915933:159275..159575Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1510915933:159112..159137TCONS_00049366-exon-scaffold_155-1510915933:159112..159137Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1510915933:158807..158873TCONS_00049366-exon-scaffold_155-1510915933:158807..158873Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1510915933:158051..158283TCONS_00049366-exon-scaffold_155-1510915933:158051..158283Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1510915933:157474..157781TCONS_00049366-exon-scaffold_155-1510915933:157474..157781Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1491911889:159275..159575TCONS_00049366-exon-scaffold_155-1491911889:159275..159575Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1491911889:159112..159137TCONS_00049366-exon-scaffold_155-1491911889:159112..159137Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1491911889:158807..158873TCONS_00049366-exon-scaffold_155-1491911889:158807..158873Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1491911889:158051..158283TCONS_00049366-exon-scaffold_155-1491911889:158051..158283Clytia hemisphaericaexon
TCONS_00049366-exon-scaffold_155-1491911889:157474..157781TCONS_00049366-exon-scaffold_155-1491911889:157474..157781Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_155supercontigscaffold_155:157474..159575 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.00959132	0.0694763	0.203559	0	0	0.368737	0.183961	0	0.134461	0	0.309061	0	0.0175733	0	0.320242	4.47703e-08	0.521997	0.541752	0	0.22994	0.0992935	0	0	0	0	3.35441e-09	0.270661	0	0.340583	0
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049366 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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