TCONS_00049225 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049225
Unique NameTCONS_00049225
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length611

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049225 ID=TCONS_00049225|Name=TCONS_00049225|organism=Clytia hemisphaerica|type=transcript|length=611bp
CAGAATGTAAACATTGGAAGCTTTTATAACACTGAGAATGAGCCAGTTCA
ACAGAGCATTCATCTATGGAGCAGCAACAATCAACAAGCAAACCTTCAAC
ACCAGAATACAGTCGCTGTAGATTGCCAACAAGATCAACACACTTACTGT
CCATCCTCAGAGCTGAACACCTTTCCACGCTATGCTTTCCAAGAGTCTCC
CAGCAATGGCCCCTGGATTTCACCTTGCATGGAAATCACGGCAACTGGGG
ACAGCGAATACATCAATAAACCAATTAATGAGCTTTCACAACAAACTGTA
CAAATGAACGAACCATCAAAAGCTTGCGAAAATTCATCATATTGTAAAAG
CTTTGGACAAAGGACGCACAAAAATGCCTCAATAACCGCTGAACACAAAA
CGGTGTTCGAAGCGTTAGAGATACCTGTTACAAACTACTCAAAACCACCC
ACCACACGCCAACGTCAACGCCATATTAGAAATCCTTACAGTCAAgcact
taaccctattcggcctagagggggctgtttctgttcggaggtcaaattat
tggtaatagctcctgaaataaaagagcttttgccatgaaattttctgtaa
atttctaactt
Run BLAST on NCBI

protein sequence of TCONS_00049225-protein

>TCONS_00049225-protein ID=TCONS_00049225-protein|Name=TCONS_00049225-protein|organism=Clytia hemisphaerica|type=polypeptide|length=195bp
QNVNIGSFYNTENEPVQQSIHLWSSNNQQANLQHQNTVAVDCQQDQHTYC
PSSELNTFPRYAFQESPSNGPWISPCMEITATGDSEYINKPINELSQQTV
QMNEPSKACENSSYCKSFGQRTHKNASITAEHKTVFEALEIPVTNYSKPP
TTRQRQRHIRNPYSQALNPIRPRGGCFCSEVKLLVIAPEIKELLP
Run BLAST on NCBI

transcript from alignment at scaffold_154:452685..454498+

Legend: exonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049225 ID=TCONS_00049225|Name=TCONS_00049225|organism=Clytia hemisphaerica|type=transcript|length=1814bp|location=Sequence derived from alignment at scaffold_154:452685..454498+ (Clytia hemisphaerica)
CAGAATGTAAACATTGGAAGCTTTTATAACACTGAGAATGAGCCAGTTCA
ACAGAGCATTCATCTATGGAGCAGCAACAATCAACAAGCAAACCTTCAAC
ACCAGAATACAGTCGCTGTAGATTGCCAACAAGATCAACACACTTACTGT
CCATCCTCAGAGCTGAACACCTTTCCACGCTATGCTTTCCAAGAGTCTCC
CAGCAATGGCCCCTGGATTTCACCTTGCATGGAAATCACGGCAACTGGGG
ACAGCGAATACATCAATAAACCAATTAATGAGCTTTCACAACAAACTGTA
CAAATGAACGGTGAGTGGATTTTACTGAATGAAGCGCGGATCCCTCCTAT
TTTCTTTATCAGTGTGAATAATAAGTcaacttatttttctttttggtttg
aCTCAAAAGTTTagaattttgacactttttttcttcacccgACCGCTGTA
GAAAACTCTGCTCAGTTGCGTTAGTTAAATCTAAATCTTCTCTCAAGCTA
GAACCAAAGCTCTGCGGATTGTTACTANTTGATGGTTATGCTTTCACACC
ATCTCAAACACAAATCCCAAACAATCCAACATATTTTCAGACATACCAGA
AAACGGAACTCAACCGACAAAGCATAGCTTTACGAGACACTGAGTTTATG
ACTCAGACTCCAGCTATAACTGGATATGACACAGACTGTGTCCACCCTAT
AACTAGTCCCATGACTGATTCGCTGCAACCAGACCACAGACAAGTCGCGC
ATGCTCTATTAAATCAAGGCAACGATCAACTCTCAGGTCAAGTTCTATTC
CAATGTAATGATACCAGCTATTTCCAAGATAAAACTTTCACTTTTCCATC
GCTGGTAAACAACCAAAATACTGGTACTGCAAACTACAACCAATCAGTTC
AACAAATGCCAGCTTTCCTCCAGAACCAGGGGAATCAGAATGTAAACATT
GGAAGCTTTTATAACACTGAGAATGAGCCAGTTCAACAGAGCATTCATCT
ATGGAGCAGCAACAATCAACAAGCAAACCTTCAACACCAGAATACAGTCG
CTGTAGATTGCCAACAAGATCAACACACTTACTGTCCATCCTCAGAGCTG
AACACCTTTCCACGCTATGCTTTCCAAGAGTCGCCCAGCAATGGCTCCTG
GATTCCACCTTGCATGGAAATCACGTCAATTGGGAACAGCGAATACATCA
ATGAGCCAATTAATGAGCTTTCACAACAAACTGTACAAATGAACGGTGAG
TGCTTTTTTTTACTGAATGAAGCGCGGATCACTCCTTTTCTTTATCAGTG
ACTAGGtaaacttatttttcttattggTTTGACTCAAAAGTTTagaattt
tgacacttttttctTCACCCGACCGCTGTAGAACACTCTACTCGGTCGCG
TTAAGTTAATTCTAGATCTTTGCTCAAGTAAGAACCAAAGCTCTGCAGAT
GGTTACTAAGCTTAAATATTATACACGATTGCAAATTTACCAAATTCATT
TCTCCATTATTAGAACCATCAAAAGCTTGCGAAAATTCATCATATTGTAA
AAGCTTTGGACAAAGGACGCACAAAAATGCCTCAATAACCGCTGAACACA
AAACGGTGTTCGAAGCGTTAGAGATACCTGTTACAAACTACTCAAAACCA
CCCACCACACGCCAACGTCAACGCCATATTAGAAATCCTTACAGTCAAgc
acttaaccctattcggcctagagggggctgtttctgttcggaggtcaaat
tattggtaatagctcctgaaataaaagagcttttgccatgaaattttctg
taaatttctaactt

Coding sequence (CDS) from alignment at scaffold_154:452685..454498+

>TCONS_00049225 ID=TCONS_00049225|Name=TCONS_00049225|organism=Clytia hemisphaerica|type=CDS|length=1176bp|location=Sequence derived from alignment at scaffold_154:452685..454498+ (Clytia hemisphaerica)
CAGAATGTAAACATTGGAAGCTTTTATAACACTGAGAATGAGCCAGTTCA
ACAGAGCATTCATCTATGGAGCAGCAACAATCAACAAGCAAACCTTCAAC
ACCAGAATACAGTCGCTGTAGATTGCCAACAAGATCAACACACTTACTGT
CCATCCTCAGAGCTGAACACCTTTCCACGCTATGCTTTCCAAGAGTCTCC
CAGCAATGGCCCCTGGATTTCACCTTGCATGGAAATCACGGCAACTGGGG
ACAGCGAATACATCAATAAACCAATTAATGAGCTTTCACAACAAACTGTA
CAAATGAACGAACCATCAAAAGCTTGCGAAAATTCATCATATTGTAAAAG
CTTTGGACAAAGGACGCACAAAAATGCCTCAATAACCGCTGAACACAAAA
CGGTGTTCGAAGCGTTAGAGATACCTGTTACAAACTACTCAAAACCACCC
ACCACACGCCAACGTCAACGCCATATTAGAAATCCTTACAGTCAAgcact
taaccctattcggcctagagggggctgtttctgttcggaggtcaaattat
tggtaatagctcctgaaataaaagagcttttgccatgaCAGAATGTAAAC
ATTGGAAGCTTTTATAACACTGAGAATGAGCCAGTTCAACAGAGCATTCA
TCTATGGAGCAGCAACAATCAACAAGCAAACCTTCAACACCAGAATACAG
TCGCTGTAGATTGCCAACAAGATCAACACACTTACTGTCCATCCTCAGAG
CTGAACACCTTTCCACGCTATGCTTTCCAAGAGTCTCCCAGCAATGGCCC
CTGGATTTCACCTTGCATGGAAATCACGGCAACTGGGGACAGCGAATACA
TCAATAAACCAATTAATGAGCTTTCACAACAAACTGTACAAATGAACGAA
CCATCAAAAGCTTGCGAAAATTCATCATATTGTAAAAGCTTTGGACAAAG
GACGCACAAAAATGCCTCAATAACCGCTGAACACAAAACGGTGTTCGAAG
CGTTAGAGATACCTGTTACAAACTACTCAAAACCACCCACCACACGCCAA
CGTCAACGCCATATTAGAAATCCTTACAGTCAAgcacttaaccctattcg
gcctagagggggctgtttctgttcggaggtcaaattattggtaatagctc
ctgaaataaaagagcttttgccatga
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031258XLOC_031258Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049225-proteinTCONS_00049225-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049225-exon-scaffold_154-1491911889:452685..452994TCONS_00049225-exon-scaffold_154-1491911889:452685..452994Clytia hemisphaericaexon
TCONS_00049225-exon-scaffold_154-1510915933:452685..452994TCONS_00049225-exon-scaffold_154-1510915933:452685..452994Clytia hemisphaericaexon
TCONS_00049225-exon-scaffold_154-1575043694:452685..452994TCONS_00049225-exon-scaffold_154-1575043694:452685..452994Clytia hemisphaericaexon
TCONS_00049225-exon-scaffold_154-1491911889:454198..454498TCONS_00049225-exon-scaffold_154-1491911889:454198..454498Clytia hemisphaericaexon
TCONS_00049225-exon-scaffold_154-1510915933:454198..454498TCONS_00049225-exon-scaffold_154-1510915933:454198..454498Clytia hemisphaericaexon
TCONS_00049225-exon-scaffold_154-1575043694:454198..454498TCONS_00049225-exon-scaffold_154-1575043694:454198..454498Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_154supercontigscaffold_154:452685..454498 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
5.6772	5.71207	6.47002	8.41487	1.13178	0.27218	1.88429	1.1038	0.463119	1.9512	3.25075	1.87639	5.13266	5.18621	8.19788	7.1622	1.61891	7.86214	7.742	16.8891	3.58225	2.82405	4.39752	4.04363	0.806047	0.992907	14.6994	22.6763	8.01585	8.83532
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049225 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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