TCONS_00051394 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00051394
Unique Name	TCONS_00051394
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	2629

Sequence

The following sequences are available for this feature:

transcript sequence
protein sequence
transcript from alignment at scaffold_201:642557..647139+
coding sequence from alignment at scaffold_201:642557..647139+

transcript sequence

>TCONS_00051394 ID=TCONS_00051394|Name=TCONS_00051394|organism=Clytia hemisphaerica|type=transcript|length=2629bp
TTATAGATAATTCACAGTAAAAAACTAATGAATAAAGATGCGTAACCAAC
CGTTGGAAGATGCAGAAACAGACTTTGATTATCTCTTCAAGATTGTTTTG
ATCGGGGATGCAGGAGTTGGTAAAACAGCCATCGTCCATCGTTTCAAGTA
CAATACTTTTGTTGAACGACATGCAAGCACCATTGGGGTTGATTTCACTA
TCAAAACCATGCAAGTTGATGACAAGAAAGTAAAAcTTCAGATTTGGGAT
ACAGCAGGACAAGAACGTTTTCGGACAATCACTCAAAGTTATTATCGATC
AGCCAATGGCGTCGTCTTAGTTTATGATATATCAACTGCAGATTCGTTCA
AGAATTTGGGACGTTGGTTGGAGGACGTCaagaaatatgctggaaaatgT
CTGCATCAAATGATGATAGGTAACAAGTGTGATCTTCACCATCGTAGAGA
AGTGTCTGAGGAGGAAGCCAAGAACTTTGCAAGTCATTATGGTATCGGTG
ATACATTGGAAACATCGGCTAAAGAAAATTCGAACATCGAGGAAGCGTTC
TGGCGGATAGCCAAACATTTAAAAGACCTTTATGAGAATGAAGAAGGACT
TAAAAGTTCCAATACACAAGAAGTTATTCTGGACTCAAAAAGTGTCGGTG
GAAGTAGCTGTTGCGGATCTTGAATGGCGAATCTTTGTGTGTTTGTTTTA
GCGAATTGTACCATATCGAATTCTTTATAGCGTTGTAGTAAGTTAATGGA
TGTAAATGAACTCTTCCGACCCAACTTTCCTGGAGACTTTCCAGTGTCAA
CCTCGCATTTGGTaagatttgaaatattacctctCTATCGGAAATTTGTT
ACAGAATATCGTGCTTCTATGATCATTTGCGATGATATGATTAACAATTA
ATAAGAAATGGTGTTTATAACTATTTTGTGTAAgtatttctttagttttt
tacAGTGCTCGATACATAAGTAAAGCTATGTCAGTcaggaagaaagaaaa
aaatgtgttttttctTCCTGACTAACTATTTTGTGTAGCATTGTTTTGGT
GCTTGCTTGTTTGGGTATTTTACTGATCTTTATTCATATACTTCTTTCAC
TGGATTTCTGTTCTCTTCGTGAAGTTGCTCAAAGTGTTGAACAAACCGCT
TGAATGTATTTGCAACTCCATGTCgcacatttttttaaacattttttagt
GAAGAAAGATACAGATTATTTCTGTATCCTGTCCATGCCATTTTACAATT
TCAGTACCTTCAGAACTCGTGGCTAATTTGTTGGCTTTGAAACGTTCTGC
AATTGAATTAATtgaataatcagatggtttgagatttttggcCCAAGCAA
ACCCACGTGGTCCCTCGGTCAAAATTTATGAAACCTCAAAAATTGGAAGA
TTCTACAGGCCACAAATCTCAAACTATCTCTTTATCCCTGTTAATTACTT
TTTCGACAACCATTGAATATGATTAAAAGGAAACACTTCACAATTTCACT
TCACTTCATAATTACCATTTTCTATGACTCGACATTTTCCTtcgggctag
agtagaatctctaacctttcccaggcaagaaaaagtgaagccacttattt
cccatccagaacgcgcctaaaACACGctgtaatcatgacgacggattgta
tctagaggctcctttgtttttgaggactgcattttttgaaaatctagcga
tagattacagtttcaatccggcgtttgtgtaaaaaccacgcgcgggcgtt
ctgaatgggaaataagtggcctcatttcccatccaggagtctcgagccTA
GCCCCTCGGGCTTCGAAGTTAATGCTCTTGACCGGGatttctttctttaa
ctttCCTACTATATgcgataaattttctttttatttatattcaatATTTG
TAACAATAAACAATCAATGACATTGAATCAAGTGGCTCCTTCCTTTTTTG
AAGGGTTAGAATTATCAGATCatagttttagattttttttgagttttcct
CCGCTCAGCAATTTAAAGCGATATGAGATTAAGATTTAAATAAAGCTtgg
tacaatcaaggtcataatatttgagaaaaaagaaaaattccccATGAAGT
TttaaaaccacaatcgatttgtaagtgctctaaagtagggtCGAAGGGTA
GAATTTTAACCCTGAGTTTTatcgctagacttaagacttcggaccttagg
atctaaggatgtaaaagttcaaaaatagtccaataaggctcagaatatag
cctggaagtctgccaacctctcccaaatcgaaatattcgattaaattaaa
gagatagcccaaaatcgactttctcgccggaactttaaatcttgaaaaac
gttaaaataaccgaaaTTCCTAATAtttttcaaccatgattgtagacaTA
TGATATGGTGCTCATAGTGTGGTTTTCCGCGTCCAGCAATTTTAATCATT
GTATTGTTTAAGTTGACAGACTACCTAGACTACCTAGAATCTCGGAAATT
AAGatgacaatttctttttttatattttagtttatagtttttgttctgtt
ttttcgggtaaaaatatattttgtatgTGGAAATAGTATAATATTTTAGA
TTATGAAATAAAACGaaagaaaagctcaa

Run BLAST on NCBI

protein sequence of TCONS_00051394-protein

>TCONS_00051394-protein ID=TCONS_00051394-protein|Name=TCONS_00051394-protein|organism=Clytia hemisphaerica|type=polypeptide|length=211bp
MRNQPLEDAETDFDYLFKIVLIGDAGVGKTAIVHRFKYNTFVERHASTIG
VDFTIKTMQVDDKKVKLQIWDTAGQERFRTITQSYYRSANGVVLVYDIST
ADSFKNLGRWLEDVKKYAGKCLHQMMIGNKCDLHHRREVSEEEAKNFASH
YGIGDTLETSAKENSNIEEAFWRIAKHLKDLYENEEGLKSSNTQEVILDS
KSVGGSSCCGS

Run BLAST on NCBI

transcript from alignment at scaffold_201:642557..647139+

Legend: exonfive_prime_UTRCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00051394 ID=TCONS_00051394|Name=TCONS_00051394|organism=Clytia hemisphaerica|type=transcript|length=4583bp|location=Sequence derived from alignment at scaffold_201:642557..647139+ (Clytia hemisphaerica)
TTATAGATAATTCACAGTAAAAAACTAATGAATAAAGATGCGTAACCAAC
CGTTGGAAGATGCAGAAACAGACTTTGATTATCTCTTCAAGATTGTTTTG
ATCGGGGATGCAGGAGTTGGTAAAACAGCCATCGTCCATCGTTTCAAGTA
CAATACTTTTGTTGAACGACATGCAAGCACCATTGGGGTTGATTTCACTA
TCAAAACCATGCAAGTTGATGACAAGAAAGTAAAAGTATGTATACCTTCG
TTGTTTTATTTCACCCTTGGCTTTTAAAGTCGTGAAATTTTTGGTTACAG
TTTGGAAGTTCTATCCTTTCATTCTTAAAATGTACAAATCTTGATCTATC
ACACAATAGCAGCTATTAAACCTCCTTTTTTGCtacaatgggctattcca
ttaaaaatccatacatgggggtggacgaaccttttcaagtgaaaataaaa
ttctcgGAAATGTAaagataccccctggaaaaaggcaaaatttgcaaaga
aacccttggaaaaatttctttttatacttAAATACCTAAatcttttaccc
cctgaaaattttagaatagctttttcaccccctggaaaatgaaaaaaaaa
tttttctcaggtTTACCCTGGAAATattcgtccaccccccccccccccta
tggAGATAAAATTGAATGACCCAATTCCTAATTATCTTTGCTGCGGCATA
TTCTAGAAATAAAGCACACCGTTTTTCGCTTAAgtcttaaaaaaagtttt
tctcagTCTGACCAGAAACTTTTAAAGAGTGTGAAAAGTGTTATAATCCA
GTATAATCTAATCCAAAATTATGCTCAAATTACTGACACACAAGAATTAT
TTTCtatcatttgtttatattttagcTTCAGATTTGGGATACAGCAGGAC
AAGAACGTTTTCGGACAATCACTCAAAGTTATTATCGATCAGCCAATGGC
GTCGTCTTAGTTTATGATATATCAACTGCAGGTACAGAATTCTTTCTCCC
AGATGTTCGGgttttttattggtttttatATCAGTCTTGCATCTAAAATC
TTCGCAGAAACATACATGAAAAAGTATATATTAAAAATCATACAGGTTTT
ATGAAACTTTCTCTGGTCCATCCGGTTCTATCAGTCTACAGCATTTTAAG
TTGTTTTAACGATATAACAATTTGTTAGGCTCTTTGGTCTTTTTCCGCtg
taatttaaaatattttttgttgaaatattcACCTCTCTCCCAAAAGATTC
GTTCAAGAATTTGGGACGTTGGTTGGAGGACGTCaagaaatatgctggaa
aatgTCTGCATCAAATGATGATAGGTAGGAAAAGAAAGAACTAATATAAT
AGGTCTAAAAAGTATCTCAAACTAATTTGACAATGAGTAAAAAAGCATTT
ATCTAAGAAAGAGAAGCAAGTCTCCATAACTGGAATAAATTTCGATTCTC
CGCACAGTTCCACATGTTTGAGTTTATATGAAGAGTCAGCTGTAAAACAA
TTTTAATGCAAAATATAaacaggccatttttcatgccctttctGGCACGT
TTTTAAAAAAGTGCTGTATATTTGATCTACAATGTTTCATTAGtgacgtt
ctaagattgaagattcTCTGATATGAAAATTATAGTCCCAGCACGATTCt
acagaaaaattatttttctcatttttctcattttttgaatgtttttgaat
tttcctATTTGGTAATAATGCACTCCTGACTTTTTGTCTCCGctgattat
tttgagacagatttTAGTGATTTACTAATCATACTCCATGTTTTGCAGGT
AACAAGTGTGATCTTCACCATCGTAGAGAAGTGTCTGAGGAGGAAGCCAA
GAACTTTGCAAGTCATTATGGTATCGGTGATACATTGGAAACATCGGCTA
AAGTGATTTAATTGTTTAATTGCCTGTTTAATATTCGGGTGAATCATCCA
CTCCCCAAacccgccaaattttctttctgccaaaatttctttccatcAAA
ATTTCTTTCNGCCAAacccgccaaattttctttccgccaaaatttcttcc
ctttaaGGTAGTTTTTGTATTACATGTCTGTAGCTTTATTCTCCGATGAG
GGGTTATCCTACCACCTGATAATCTGGATTAGATAGTTATTCATTGACAA
ATAAGCAAGAAGGTTCCCCAAGAGCTTTCGatataaatttgtttttatcg
TTAAGTCTATAGTTCGTGGTGAGTTGCACGAGATGTGATAAAGTTCGTGG
TATTCTTCATGTAAGGGATATGGCTGAAGAAAAAAGCATCATTAAAGTCT
CTACTTaatctgattattttcatatcaaaattctTGGCTTGGTAAAATGA
ATCTCAGAATAACTCCACGATTTTAGATTATCCATTATAATCGGCCTCTG
AGCATTTATCGATCGCGATGTAACGAGTTATGATTACAACTCTCATGTTG
ATTCCATATTCTATCTCACAATTTCAGGAAAATTCGAACATCGAGGAAGC
GTTCTGGCGGATAGCCAAACATTTAAAAGACCTTTATGAGAATGAAGAAG
GACTTAAAAGTTCCAATACACAAGAAGTTATTCTGGACTCAAAAAGTGTC
GGTGGAAGTAGCTGTTGCGGATCTTGAATGGCGAATCTTTGTGTGTTTGT
TTTAGCGAATTGTACCATATCGAATTCTTTATAGCGTTGTAGTAAGTTAA
TGGATGTAAATGAACTCTTCCGACCCAACTTTCCTGGAGACTTTCCAGTG
TCAACCTCGCATTTGGTaagatttgaaatattacctctCTATCGGAAATT
TGTTACAGAATATCGTGCTTCTATGATCATTTGCGATGATATGATTAACA
ATTAATAAGAAATGGTGTTTATAACTATTTTGTGTAAgtatttctttagt
tttttacAGTGCTCGATACATAAGTAAAGCTATGTCAGTcaggaagaaag
aaaaaaatgtgttttttctTCCTGACTAACTATTTTGTGTAGCATTGTTT
TGGTGCTTGCTTGTTTGGGTATTTTACTGATCTTTATTCATATACTTCTT
TCACTGGATTTCTGTTCTCTTCGTGAAGTTGCTCAAAGTGTTGAACAAAC
CGCTTGAATGTATTTGCAACTCCATGTCgcacatttttttaaacattttt
tagtGAAGAAAGATACAGATTATTTCTGTATCCTGTCCATGCCATTTTAC
AATTTCAGTACCTTCAGAACTCGTGGCTAATTTGTTGGCTTTGAAACGTT
CTGCAATTGAATTAATtgaataatcagatggtttgagatttttggcCCAA
GCAAACCCACGTGGTCCCTCGGTCAAAATTTATGAAACCTCAAAAATTGG
AAGATTCTACAGGCCACAAATCTCAAACTATCTCTTTATCCCTGTTAATT
ACTTTTTCGACAACCATTGAATATGATTAAAAGGAAACACTTCACAATTT
CACTTCACTTCATAATTACCATTTTCTATGACTCGACATTTTCCTtcggg
ctagagtagaatctctaacctttcccaggcaagaaaaagtgaagccactt
atttcccatccagaacgcgcctaaaACACGctgtaatcatgacgacggat
tgtatctagaggctcctttgtttttgaggactgcattttttgaaaatcta
gcgatagattacagtttcaatccggcgtttgtgtaaaaaccacgcgcggg
cgttctgaatgggaaataagtggcctcatttcccatccaggagtctcgag
ccTAGCCCCTCGGGCTTCGAAGTTAATGCTCTTGACCGGGatttctttct
ttaactttCCTACTATATgcgataaattttctttttatttatattcaatA
TTTGTAACAATAAACAATCAATGACATTGAATCAAGTGGCTCCTTCCTTT
TTTGAAGGGTTAGAATTATCAGATCatagttttagattttttttgagttt
tcctCCGCTCAGCAATTTAAAGCGATATGAGATTAAGATTTAAATAAAGC
TtggtacaatcaaggtcataatatttgagaaaaaagaaaaattccccATG
AAGTTttaaaaccacaatcgatttgtaagtgctctaaagtagggtCGAAG
GGTAGAATTTTAACCCTGAGTTTTatcgctagacttaagacttcggacct
taggatctaaggatgtaaaagttcaaaaatagtccaataaggctcagaat
atagcctggaagtctgccaacctctcccaaatcgaaatattcgattaaat
taaagagatagcccaaaatcgactttctcgccggaactttaaatcttgaa
aaacgttaaaataaccgaaaTTCCTAATAtttttcaaccatgattgtaga
caTATGATATGGTGCTCATAGTGTGGTTTTCCGCGTCCAGCAATTTTAAT
CATTGTATTGTTTAAGTTGACAGACTACCTAGACTACCTAGAATCTCGGA
AATTAAGatgacaatttctttttttatattttagtttatagtttttgttc
tgttttttcgggtaaaaatatattttgtatgTGGAAATAGTATAATATTT
TAGATTATGAAATAAAACGaaagaaaagctcaa

Coding sequence (CDS) from alignment at scaffold_201:642557..647139+

>TCONS_00051394 ID=TCONS_00051394|Name=TCONS_00051394|organism=Clytia hemisphaerica|type=CDS|length=3180bp|location=Sequence derived from alignment at scaffold_201:642557..647139+ (Clytia hemisphaerica)
ATGCGTAACCAACCGTTGGAAGATGCAGAAACAGACTTTGATTATCTCTT
CAAGATTGTTTTGATCGGGGATGCAGGAGTTGGTAAAACAGCCATCGTCC
ATCGTTTCAAGTACAATACTTTTGTTGAACGACATGCAAGCACCATTGGG
GTTGATTTCACTATCAAAACCATGCAAGTTGATGACAAGAAAGTAAAAcT
TCAGATTTGGGATACAGCAGGACAAGAACGTTTTCGGACAATCACTCAAA
GTTATTATCGATCAGCCAATGGCGTCGTCTTAGTTTATGATATATCAACT
GCAGATTCGTTCAAGAATTTGGGACGTTGGTTGGAGGACGTCaagaaata
tgctggaaaatgTCTGCATCAAATGATGATAGGTAACAAGTGTGATCTTC
ACCATCGTAGAGAAGTGTCTGAGGAGGAAGCCAAGAACTTTGCAAGTCAT
TATGGTATCGGTGATACATTGGAAACATCGGCTAAAGAAAATTCGAACAT
CGAGGAAGCGTTCTGGCGGATAGCCAAACATTTAAAAGACCTTTATGAGA
ATGAAGAAGGACTTAAAAGTTCCAATACACAAGAAGTTATTCTGGACTCA
AAAAGTGTCGGTGGAAGTAGCTGTTGCGGATCTTGAATGCGTAACCAACC
GTTGGAAGATGCAGAAACAGACTTTGATTATCTCTTCAAGATTGTTTTGA
TCGGGGATGCAGGAGTTGGTAAAACAGCCATCGTCCATCGTTTCAAGTAC
AATACTTTTGTTGAACGACATGCAAGCACCATTGGGGTTGATTTCACTAT
CAAAACCATGCAAGTTGATGACAAGAAAGTAAAAcTTCAGATTTGGGATA
CAGCAGGACAAGAACGTTTTCGGACAATCACTCAAAGTTATTATCGATCA
GCCAATGGCGTCGTCTTAGTTTATGATATATCAACTGCAGATTCGTTCAA
GAATTTGGGACGTTGGTTGGAGGACGTCaagaaatatgctggaaaatgTC
TGCATCAAATGATGATAGGTAACAAGTGTGATCTTCACCATCGTAGAGAA
GTGTCTGAGGAGGAAGCCAAGAACTTTGCAAGTCATTATGGTATCGGTGA
TACATTGGAAACATCGGCTAAAGAAAATTCGAACATCGAGGAAGCGTTCT
GGCGGATAGCCAAACATTTAAAAGACCTTTATGAGAATGAAGAAGGACTT
AAAAGTTCCAATACACAAGAAGTTATTCTGGACTCAAAAAGTGTCGGTGG
AAGTAGCTGTTGCGGATCTTGAATGCGTAACCAACCGTTGGAAGATGCAG
AAACAGACTTTGATTATCTCTTCAAGATTGTTTTGATCGGGGATGCAGGA
GTTGGTAAAACAGCCATCGTCCATCGTTTCAAGTACAATACTTTTGTTGA
ACGACATGCAAGCACCATTGGGGTTGATTTCACTATCAAAACCATGCAAG
TTGATGACAAGAAAGTAAAAcTTCAGATTTGGGATACAGCAGGACAAGAA
CGTTTTCGGACAATCACTCAAAGTTATTATCGATCAGCCAATGGCGTCGT
CTTAGTTTATGATATATCAACTGCAGATTCGTTCAAGAATTTGGGACGTT
GGTTGGAGGACGTCaagaaatatgctggaaaatgTCTGCATCAAATGATG
ATAGGTAACAAGTGTGATCTTCACCATCGTAGAGAAGTGTCTGAGGAGGA
AGCCAAGAACTTTGCAAGTCATTATGGTATCGGTGATACATTGGAAACAT
CGGCTAAAGAAAATTCGAACATCGAGGAAGCGTTCTGGCGGATAGCCAAA
CATTTAAAAGACCTTTATGAGAATGAAGAAGGACTTAAAAGTTCCAATAC
ACAAGAAGTTATTCTGGACTCAAAAAGTGTCGGTGGAAGTAGCTGTTGCG
GATCTTGAATGCGTAACCAACCGTTGGAAGATGCAGAAACAGACTTTGAT
TATCTCTTCAAGATTGTTTTGATCGGGGATGCAGGAGTTGGTAAAACAGC
CATCGTCCATCGTTTCAAGTACAATACTTTTGTTGAACGACATGCAAGCA
CCATTGGGGTTGATTTCACTATCAAAACCATGCAAGTTGATGACAAGAAA
GTAAAAcTTCAGATTTGGGATACAGCAGGACAAGAACGTTTTCGGACAAT
CACTCAAAGTTATTATCGATCAGCCAATGGCGTCGTCTTAGTTTATGATA
TATCAACTGCAGATTCGTTCAAGAATTTGGGACGTTGGTTGGAGGACGTC
aagaaatatgctggaaaatgTCTGCATCAAATGATGATAGGTAACAAGTG
TGATCTTCACCATCGTAGAGAAGTGTCTGAGGAGGAAGCCAAGAACTTTG
CAAGTCATTATGGTATCGGTGATACATTGGAAACATCGGCTAAAGAAAAT
TCGAACATCGAGGAAGCGTTCTGGCGGATAGCCAAACATTTAAAAGACCT
TTATGAGAATGAAGAAGGACTTAAAAGTTCCAATACACAAGAAGTTATTC
TGGACTCAAAAAGTGTCGGTGGAAGTAGCTGTTGCGGATCTTGAATGCGT
AACCAACCGTTGGAAGATGCAGAAACAGACTTTGATTATCTCTTCAAGAT
TGTTTTGATCGGGGATGCAGGAGTTGGTAAAACAGCCATCGTCCATCGTT
TCAAGTACAATACTTTTGTTGAACGACATGCAAGCACCATTGGGGTTGAT
TTCACTATCAAAACCATGCAAGTTGATGACAAGAAAGTAAAAcTTCAGAT
TTGGGATACAGCAGGACAAGAACGTTTTCGGACAATCACTCAAAGTTATT
ATCGATCAGCCAATGGCGTCGTCTTAGTTTATGATATATCAACTGCAGAT
TCGTTCAAGAATTTGGGACGTTGGTTGGAGGACGTCaagaaatatgctgg
aaaatgTCTGCATCAAATGATGATAGGTAACAAGTGTGATCTTCACCATC
GTAGAGAAGTGTCTGAGGAGGAAGCCAAGAACTTTGCAAGTCATTATGGT
ATCGGTGATACATTGGAAACATCGGCTAAAGAAAATTCGAACATCGAGGA
AGCGTTCTGGCGGATAGCCAAACATTTAAAAGACCTTTATGAGAATGAAG
AAGGACTTAAAAGTTCCAATACACAAGAAGTTATTCTGGACTCAAAAAGT
GTCGGTGGAAGTAGCTGTTGCGGATCTTGA

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_032568	XLOC_032568	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

The following polypeptide feature(s) derives from this transcript:


Feature Name	Unique Name	Species	Type
TCONS_00051394-protein	TCONS_00051394-protein	Clytia hemisphaerica	polypeptide

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_201	supercontig	scaffold_201:642557..647139 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.5252	4.14212	7.82812	11.0259	11.5762	7.87529	10.8652	11.7238	11.5625	12.1319	14.396	9.96919	16.4439	12.1564	9.91097	10.9781	12.3171	10.7516	9.24411	14.1438	11.7919	11.6731	11.6446	13.1796	14.1106	14.4785	15.1802	12.437	13.8474	12.5146

Annotated Terms

The following terms have been associated with this transcript:

Vocabulary: **INTERPRO**
Term	Definition
IPR001806	Small_GTPase
IPR005225	Small_GTP-bd_dom
IPR027417	P-loop_NTPase

Vocabulary: **Molecular Function**
Term	Definition
GO:0005525	GTP binding
GO:0003924	GTPase activity

GO Annotation

GO Assignments

This transcript is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003924	GTPase activity
molecular_function	GO:0005525	GTP binding

Blast

[Close]

BLAST of TCONS_00051394 vs. Swiss-Prot (Human)
Match: RAB43 (Ras-related protein Rab-43 OS=Homo sapiens GN=RAB43 PE=1 SV=1)

HSP 1 Score: 221.09 bits (562), Expect = 7.136e-66
Identity = 103/166 (62.05%), Postives = 129/166 (77.71%), Query Frame = 2

Query:   74 FDYLFKIVLIGDAGVGKTAIVHRFKYNTFVERHASTIGVDFTIKTMQVDDKKVKLQIWDTAGQERFRTITQSYYRSANGVVLVYDISTADSFKNLGRWLEDVKKYAGKCLHQMMIGNKCDLHHRREVSEEEAKNFASHYGIGDTLETSAKENSNIEEAFWRIAKHL 571
            +D+LFK+VL+GDA VGKT +V RFK   F ER  STIGVDFT+KT+++  K+VKLQIWDTAGQERFRTITQSYYRSANG +L YDI+   SF ++  W+EDV+KYAG  + Q++IGNK DL   REVS  EA++ A HY I   +ETSAK++SN+EEAF R+A  L
Sbjct:   15 YDFLFKLVLVGDASVGKTCVVQRFKTGAFSERQGSTIGVDFTMKTLEIQGKRVKLQIWDTAGQERFRTITQSYYRSANGAILAYDITKRSSFLSVPHWIEDVRKYAGSNIVQLLIGNKSDLSELREVSLAEAQSLAEHYDILCAIETSAKDSSNVEEAFLRVATEL 180

The following BLAST results are available for this feature:

BLAST of TCONS_00051394 vs. Swiss-Prot (Human)

BLAST of TCONS_00051394 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
RAB43	7.136e-66	62.05	Ras-related protein Rab-43 OS=Homo sapiens GN=RAB4...	[more]

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TCONS_00051394 (transcript) - C. hemisphaerica