TCONS_00049144 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049144
Unique NameTCONS_00049144
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1305

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049144 ID=TCONS_00049144|Name=TCONS_00049144|organism=Clytia hemisphaerica|type=transcript|length=1305bp
tttcAGCTCAATTCAGCAAATATGGCAATGCAAAGAGGTATACCCAATCA
ACAACCTAGATTCCCTGGCATGATGAATCAAAAACTACCTGGCATGCAAA
TGCCAAATCAAATGCAACAACATCGACCAAATATGATCAATAGAATGAAC
AACCCTGCAATGTTTGCAAATTCTGGCCAAACCATGCAGATGAACCAGCA
GTTGCAACAACATAATCAAAACCAAAATTTGCCTcagcagcaacaacaac
aactgtCTCAAAATCAGAACAACCAATTTCAATCACAACCAAACCAACAG
CCTGTGAACAACTTTCAAATGAATCAACAACCAAACTCTATGAACAATTT
ACCTTCTCAAAACTTACCGACAAGTCTCTCTAACCCTGTCAAAGTGGAAG
ATCAAGTAATGAGCTCGTGTATTCCAACTAGTAGTACTGACCAAATTTCC
ACGCAACCATCGTCTACTCCTTCAACTCTCACTTCTTCAGCTTTAGGCTT
GCAAACTCCTAAAACTGAAACATCCCTATTATCTTGTAATTCAAACGTGA
AAACGGAACCACCATCTCCCATGCAAACTTCAACAGAAGATGTTAAACCG
GACATCAAAACTGAAGTGAAAATGGAAATATCAGAAAGCACTTCTACATC
AACAACTACTGCAACAACATCAGCCACTGTTTCTTCTTCAAGTGCTGTCG
TAAAGACTGAAGCATCAGGATCCCCTGCCACTGTCAAAACTGAAGTCAAG
CCAAAAGTCTATAAAATATGGACAAAGGAGGAATTGATTGAAAGTTTGAT
GCCAGTCTTTGATAAAGTTCACAAAATAGATCCAGAATCTGGACCTTTCT
TAACTCCCGTCAACCCAGACCAACTAGGAATTCCAGATTACTTTCACATT
GTCAAGAATCCAATGGATTTGTCAACAATCAAAAGTAAATTGGACAATGG
TGACTACAAGGATCCCTGGGGTTTTTGCGATGACATGAGGTTAATGTTTG
AAAATGCTTGGTTATACAACAAGAAGACAACGAAAGTTTATAAATACTGT
TCAAAACTTTATGATATATTTGAAGCTGACATTGATCCAGTGATGAAGAA
ACTTGGTTACTGTTGTGGTAGTAAGCATCTTTTCAATCCTCAAGTTTTGT
ATTGTCTTGGTCAAAATGGTTCATGTACAATTGGTCGAGATAAACAATAC
TATTCCTACCAAGACAGGTATCACTATTGTGAAAATTGTTTCAACGCCTT
CGAAGGTGATTCCATCAATTTTGGTGAAGACACAATATTAGAAAAAACGT
CCAAT
Run BLAST on NCBI

transcript from alignment at scaffold_153:129458..132313+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049144 ID=TCONS_00049144|Name=TCONS_00049144|organism=Clytia hemisphaerica|type=transcript|length=2856bp|location=Sequence derived from alignment at scaffold_153:129458..132313+ (Clytia hemisphaerica)
tttcAGCTCAATTCAGCAAATATGGCAATGCAAAGAGGTATACCCAATCA
ACAACCTAGATTCCCTGGCATGATGAATCAAAAACTACCTGGCATGCAAA
TGCCAAATCAAATGCAACAACATCGACCAAATATGATCAATAGAATGAAC
AACCCTGCAATGTTTGCAAATTCTGGCCAAACCATGCAGATGAACCAGCA
GTTGCAACAACATAATCAAAACCAAAATTTGCCTcagcagcaacaacaac
aactgtCTCAAAATCAGAACAACCAATTTCAATCACAACCAAACCAACAG
CCTGTGAACAACTTTCAAATGAATCAACAACCAAACTCTATGAACAATTT
ACCTTCTCAAAACTTACCGACAAGTCTCTCTAACCCTGTCAAAGTGGAAG
ATCAAGTAATGAGCTCGTGTATTCCAACTAGTAGTACTGACCAAATTTCC
ACGCAACCATCGTCTACTCCTTCAACTCTCACTTCTTCAGCTTTAGGCTT
GCAAACTCCTAAAACTGAAACATCCCTATTATCTTGTAATTCAAACGTGA
AAACGGAACCACCATCTCCCATGCAAACTTCAACAGAAGATGTTAAACCG
GACATCAAAACTGAAGTGAAAATGGAAATATCAGAAAGCACTTCTACATC
AACAACTACTGCAACAACATCAGCCACTGTTTCTTCTTCAAGTGCTGTCG
TAAAGACTGAAGCATCAGGATCCCCTGCCACTGTCAAAACTGAAGTCAAG
CCAAAAGTCTATAAAAGTAAGTTAAAGGCTATAGTTACTTTCCTTGCTGA
CTCATtaatttttaagtatttttatcCAAAACAATCTACTTTTGCATGTT
TTaaaccattttttgaaattctcacaTTAGTATGGACAAAGGAGGAATTG
ATTGAAAGTTTGATGCCAGTCTTTGATAAAGTTCACAAAATAGATCCAGA
ATCTGGACCTTTCTTAACTCCCGTCAACCCAGACCAACTAGGAATTCCAG
TAAGTATAATTATAAACgtttttcaaaaagcattttatTCTATTCCTTAG
TCtttgaatccaaaaaaaattgattatttattATAGGCCCTTACCAAATT
CCTTTACCTCACTTTATTAGGATTACTTTCACATTGTCAAGAATCCAATG
GATTTGTCAACAATCAAAAGTAAATTGGACAATGGTGACTACAAGGATCC
CTGGGGTGTAAGTATACTGAATTTGTTCATTCCGTTAGTGGacgaaaaat
agtgtttttaaCTGTGATGTTATTTTTGATCTAATATTTGATTCATCAAT
ATCGAAAATCAATTTGCAATATGAGTTTCTAACctttcaattttcaatct
tCTTAGTTTTGCGATGACATGAGGTTAATGTTTGAAAATGCTTGGTTATA
CAACAAGAAGACAACGAAAGTTTATAAATACTGTTCAAAAGTAAGACCTT
TTATCtacactttaatgaaaatttttgtgtgattatATTATTTCTTTGCC
CCATgaaataccgggtgacccacgaaaaagttcagacgtttcccgacgtc
ttgaggccgaacaaatgtcccaaagtgcttggagttttgatatttagaaa
ttagatatcctaacttaaaatttgagctatcactttttaaatttgaccaa
cttgttctctgcctatgagcttttaaagtcaaaattcactttacggaaag
tcaaaattcattttacggaaagtcaaaattcactttacggaaagtgtaaa
aaacatctaaaaatagggtatcaaatttggtatttttagacgtttttgat
atacagtttttgaaaaaatctatgaaagcgccaatttttatataaactag
tcttattttaaacaaaaattactttcaaaggtgtttttattgattattaA
TGTCATCAAACTctttaaataagtcaatttgtaagtgattttctaattga
ttgcatgaatttaatacctcttttttacatgttttttacacttttcgaaa
agtgaattttgactttaaaagctcataagtagagaacatgttggtcaaat
ttaaaaagtgatggctcaaattttaagttaggatatctactttctaaata
tcaaaactccaagcactttgggacattttttcggcctcaagacgtcggga
aacatctgaactttttcgtgggtcacccggtactaATACTGAAGGTGACA
TAAACGACCTAAAAACATTGGCTTTTTTTTAGCTTTATGATATATTTGAA
GCTGACATTGATCCAGTGATGAAGAAACTTGGTTACTGTTGTGGTAGTAA
GGTATGGTTTCGTTTTGCTTCCTCTTGTTATTAAGCATCTTTCAGTTAAA
CAAATAACTTAGAATTTGAATATCACGTCCAaattctaaaatgacagata
gtATTCATTTATATCCCTATCGAGAGTAACTGTTCAGTTCATATGTAAAA
GGAACTTTTTACTTGGCTTGGTTTCAATAaagtttttaatgttttcaaca
TTATCAACTTGTGTTACATAGTTAATTAATAGATTAATTTCTCTGTTTTA
GCATCTTTTCAATCCTCAAGTTTTGTATTGTCTTGGTCAAAATGGTTCAT
GTACAATTGGTCGAGATAAACAATACTATTCCTACCAAGACAGGTAACTT
GAAATATTCATAAGGTTCTTAAAACCATTCAACAAATAAGTTGTGTTAAG
AATTGTTTGCTTTTTCTTGCTCATTGGAATCTTTTGATGgctaaaatatt
caaattttgttttcacaGGTATCACTATTGTGAAAATTGTTTCAACGCCT
TCGAAGGTGATTCCATCAATTTTGGTGAAGACACAATATTAGAAAAAACG
TCCAAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031230XLOC_031230Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049144-exon-scaffold_153-1491911889:129458..130223TCONS_00049144-exon-scaffold_153-1491911889:129458..130223Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1510915933:129458..130223TCONS_00049144-exon-scaffold_153-1510915933:129458..130223Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1575043694:129458..130223TCONS_00049144-exon-scaffold_153-1575043694:129458..130223Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1491911889:130338..130456TCONS_00049144-exon-scaffold_153-1491911889:130338..130456Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1510915933:130338..130456TCONS_00049144-exon-scaffold_153-1510915933:130338..130456Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1575043694:130338..130456TCONS_00049144-exon-scaffold_153-1575043694:130338..130456Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1491911889:130578..130664TCONS_00049144-exon-scaffold_153-1491911889:130578..130664Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1510915933:130578..130664TCONS_00049144-exon-scaffold_153-1510915933:130578..130664Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1575043694:130578..130664TCONS_00049144-exon-scaffold_153-1575043694:130578..130664Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1491911889:130814..130897TCONS_00049144-exon-scaffold_153-1491911889:130814..130897Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1510915933:130814..130897TCONS_00049144-exon-scaffold_153-1510915933:130814..130897Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1575043694:130814..130897TCONS_00049144-exon-scaffold_153-1575043694:130814..130897Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1491911889:131690..131758TCONS_00049144-exon-scaffold_153-1491911889:131690..131758Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1510915933:131690..131758TCONS_00049144-exon-scaffold_153-1510915933:131690..131758Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1575043694:131690..131758TCONS_00049144-exon-scaffold_153-1575043694:131690..131758Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1491911889:132009..132100TCONS_00049144-exon-scaffold_153-1491911889:132009..132100Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1510915933:132009..132100TCONS_00049144-exon-scaffold_153-1510915933:132009..132100Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1575043694:132009..132100TCONS_00049144-exon-scaffold_153-1575043694:132009..132100Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1491911889:132226..132313TCONS_00049144-exon-scaffold_153-1491911889:132226..132313Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1510915933:132226..132313TCONS_00049144-exon-scaffold_153-1510915933:132226..132313Clytia hemisphaericaexon
TCONS_00049144-exon-scaffold_153-1575043694:132226..132313TCONS_00049144-exon-scaffold_153-1575043694:132226..132313Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_153supercontigscaffold_153:129458..132313 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
Sort Descending | Sort Ascending | Only Non-Zero Values | Tile/Chart | Reset | Show/Hide Values

Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0	0	4.99348e-10	0	0	0	0	3.94638e-08	0	0	0	0	0	0	0	0	0	0	0	0	0	0.000914818	0.0352658	0	0	0	0
Blast
[Close]
BLAST of TCONS_00049144 vs. Swiss-Prot (Human)
Match: EP300 (Histone acetyltransferase p300 OS=Homo sapiens GN=EP300 PE=1 SV=2)

HSP 1 Score: 244.588 bits (623), Expect = 4.402e-70
Identity = 110/197 (55.84%), Postives = 143/197 (72.59%), Query Frame = 1 
Query:  724 PATVKTEVKPKV----YKIWTKEELIESLMPVFDKVHKIDPESGPFLTPVNPDQLGIPDYFHIVKNPMDLSTIKSKLDNGDYKDPWGFCDDMRLMFENAWLYNKKTTKVYKYCSKLYDIFEADIDPVMKKLGYCCGSKHLFNPQVLYCLGQNGSCTIGRDKQYYSYQDRYHYCENCFNAFEGDSINFGEDTILEKTS 1302
            P+T  T+  P       KI+  EEL ++LMP  + +++ DPES PF  PV+P  LGIPDYF IVK+PMDLSTIK KLD G Y++PW + DD+ LMF NAWLYN+KT++VYKYCSKL ++FE +IDPVM+ LGYCCG K  F+PQ L C G+   CTI RD  YYSYQ+RYH+CE CFN  +G+S++ G+D    +T+
Sbjct: 1030 PSTSATQSSPAPGQSKKKIFKPEELRQALMPTLEALYRQDPESLPFRQPVDPQLLGIPDYFDIVKSPMDLSTIKRKLDTGQYQEPWQYVDDIWLMFNNAWLYNRKTSRVYKYCSKLSEVFEQEIDPVMQSLGYCCGRKLEFSPQTLCCYGKQ-LCTIPRDATYYSYQNRYHFCEKCFNEIQGESVSLGDDPSQPQTT 1225
The following BLAST results are available for this feature:
BLAST of TCONS_00049144 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
EP3004.402e-7055.84Histone acetyltransferase p300 OS=Homo sapiens GN=... [more]
back to top