TCONS_00004948 (transcript) - C. hemisphaerica

Overview
NameTCONS_00004948
Unique NameTCONS_00004948
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length387

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00004948 ID=TCONS_00004948|Name=TCONS_00004948|organism=Clytia hemisphaerica|type=transcript|length=387bp
TGTTTTTGCGCTTTCAACATCACATTTTCTACCTTCACTTTTTCCATCTC
AAAGTCATTTTTCAGCTCTTCGATTCCGCGTTTCATTCTTTCAACTACAT
CTGCTGTAAAGTCGTTCCCAACTCCTTCGAGTTTGAGTCGTGCATTCTCA
GTCTTTAATCTTTCATGTTCTTTTTGTTTAAAGGTTTTCAAACTTCCCTC
CAATGGGGAAACTCTATCATGACCAGCGTTCTCTGTCCTTTCCGAACCTC
CAACAAATTGTTGGTTTTCGTCCTCGCGTACGCCTGCGGCATTATGCTCT
TCCGTCCGCCGCTCACCATGCGCATTATGCTCTCTAAACTCGTCCGCAAC
CTTTTCCATGATAATTGTAAAGTCGTTTACATCTTAG
Run BLAST on NCBI

protein sequence of TCONS_00004948-protein

>TCONS_00004948-protein ID=TCONS_00004948-protein|Name=TCONS_00004948-protein|organism=Clytia hemisphaerica|type=polypeptide|length=119bp
MEKVADEFREHNAHGERRTEEHNAAGVREDENQQFVGGSERTENAGHDRV
SPLEGSLKTFKQKEHERLKTENARLKLEGVGNDFTADVVERMKRGIEELK
NDFEMEKVKVENVMLKAQK
Run BLAST on NCBI

transcript from alignment at sc0000049:44510..44896

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00004948 ID=TCONS_00004948|Name=TCONS_00004948|organism=Clytia hemisphaerica|type=transcript|length=387bp|location=Sequence derived from alignment at sc0000049:44510..44896 (Clytia hemisphaerica)
CTAAGATGTAAACGACTTTACAATTATCATGGAAAAGGTTGCGGACGAGT
TTAGAGAGCATAATGCGCATGGTGAGCGGCGGACGGAAGAGCATAATGCC
GCAGGCGTACGCGAGGACGAAAACCAACAATTTGTTGGAGGTTCGGAAAG
GACAGAGAACGCTGGTCATGATAGAGTTTCCCCATTGGAGGGAAGTTTGA
AAACCTTTAAACAAAAAGAACATGAAAGATTAAAGACTGAGAATGCACGA
CTCAAACTCGAAGGAGTTGGGAACGACTTTACAGCAGATGTAGTTGAAAG
AATGAAACGCGGAATCGAAGAGCTGAAAAATGACTTTGAGATGGAAAAAG
TGAAGGTAGAAAATGTGATGTTGAAAGCGCAAAAACA

Coding sequence (CDS) from alignment at sc0000049:44510..44896

>TCONS_00004948 ID=TCONS_00004948|Name=TCONS_00004948|organism=Clytia hemisphaerica|type=CDS|length=357bp|location=Sequence derived from alignment at sc0000049:44510..44896 (Clytia hemisphaerica)
ATGGAAAAGGTTGCGGACGAGTTTAGAGAGCATAATGCGCATGGTGAGCG
GCGGACGGAAGAGCATAATGCCGCAGGCGTACGCGAGGACGAAAACCAAC
AATTTGTTGGAGGTTCGGAAAGGACAGAGAACGCTGGTCATGATAGAGTT
TCCCCATTGGAGGGAAGTTTGAAAACCTTTAAACAAAAAGAACATGAAAG
ATTAAAGACTGAGAATGCACGACTCAAACTCGAAGGAGTTGGGAACGACT
TTACAGCAGATGTAGTTGAAAGAATGAAACGCGGAATCGAAGAGCTGAAA
AATGACTTTGAGATGGAAAAAGTGAAGGTAGAAAATGTGATGTTGAAAGC
GCAAAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_002796XLOC_002796Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004948-proteinTCONS_00004948-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00004948-exon-sc0000049-1491911889:44510..44896TCONS_00004948-exon-sc0000049-1491911889:44510..44896Clytia hemisphaericaexon
TCONS_00004948-exon-sc0000049-1510915933:44510..44896TCONS_00004948-exon-sc0000049-1510915933:44510..44896Clytia hemisphaericaexon
TCONS_00004948-exon-sc0000049-1575043694:44510..44896TCONS_00004948-exon-sc0000049-1575043694:44510..44896Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
sc0000049supercontigsc0000049:44510..44896 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0	0	0	0.220785	0	0	0.256249	0	0.503872	0.832169	0	0	1.45813	0.688308	3.28212	1.70038	0	0.920156	9.32247	6.20791	0.385415	0.281988	3.42793	3.11648	2.78192	3.43772	0.546596	1.16668	1.32733	0.901561
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00004948 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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