TCONS_00049066 (transcript) - C. hemisphaerica

Overview
NameTCONS_00049066
Unique NameTCONS_00049066
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length722

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00049066 ID=TCONS_00049066|Name=TCONS_00049066|organism=Clytia hemisphaerica|type=transcript|length=722bp
CCAAACCTACTTAATTATTTTCCAGGACAAAGCAGACGAATGCTATGTGA
CTCGAGAACAGATGAGTTTTTGGATGCAAAGAATCAAACAGCTCGAAACG
AAAGACGAAAAGCTCACAGattctgaaaatgaaatcaCTGCGTTGaacaa
aaaagttgaagagcAAGAAAGGTTGATCAAATGCTTACAAGTGGAGATtc
aaactctaaaacaaaaCACCACGGTTAAAAAACCGAATCCCAACGTTTTG
CTCAGTGATATCCATGTATGGAAGATCAATCAATTTATGAAGAAAAGAAA
TCAAGCTTTAAGCAATTATTATAGCAgtaattttatagaaaaatatttct
atacCACACAAGGACAAAAGTTAGAAGTGACACTGTATTTTAATGGCGTT
TTGGAAAGTGTTGGTAAATCACTATCGATAGGCTTCAAAACTTTAAAAGG
AGCCTTTGACGATTCAGTCACGTGACCCATGAGAGGTGTAATTAATGTGT
ACGTCCTGTTGAATGGTAATAAGATGTATGAGCAGCAATTAAAAACTGAT
ACATCTGGTAATGCTCGTTACTTTCAGAAACCAGACGAGTCAGAGTCAAA
TGTAGCTCTGACAAACTTTATCCCGTTGAACAAACTTCATGACGTGCTAT
TCAGGAATACTTTAACCTTGAAGTTTGAAGTTGAATTTTGACCATTATGA
CCgttttttcatactttttttt
Run BLAST on NCBI

protein sequence of TCONS_00049066-protein

>TCONS_00049066-protein ID=TCONS_00049066-protein|Name=TCONS_00049066-protein|organism=Clytia hemisphaerica|type=polypeptide|length=157bp
QTYLIIFQDKADECYVTREQMSFWMQRIKQLETKDEKLTDSENEITALNK
KVEEQERLIKCLQVEIQTLKQNTTVKKPNPNVLLSDIHVWKINQFMKKRN
QALSNYYSSNFIEKYFYTTQGQKLEVTLYFNGVLESVGKSLSIGFKTLKG
AFDDSVT
Run BLAST on NCBI

transcript from alignment at scaffold_15:522641..523362

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00049066 ID=TCONS_00049066|Name=TCONS_00049066|organism=Clytia hemisphaerica|type=transcript|length=722bp|location=Sequence derived from alignment at scaffold_15:522641..523362 (Clytia hemisphaerica)
aaaaaaaagtatgaaaaaacGGTCATAATGGTCAAAATTCAACTTCAAAC
TTCAAGGTTAAAGTATTCCTGAATAGCACGTCATGAAGTTTGTTCAACGG
GATAAAGTTTGTCAGAGCTACATTTGACTCTGACTCGTCTGGTTTCTGAA
AGTAACGAGCATTACCAGATGTATCAGTTTTTAATTGCTGCTCATACATC
TTATTACCATTCAACAGGACGTACACATTAATTACACCTCTCATGGGTCA
CGTGACTGAATCGTCAAAGGCTCCTTTTAAAGTTTTGAAGCCTATCGATA
GTGATTTACCAACACTTTCCAAAACGCCATTAAAATACAGTGTCACTTCT
AACTTTTGTCCTTGTGTGgtatagaaatatttttctataaaattacTGCT
ATAATAATTGCTTAAAGCTTGATTTCTTTTCTTCATAAATTGATTGATCT
TCCATACATGGATATCACTGAGCAAAACGTTGGGATTCGGTTTTTTAACC
GTGGTGttttgttttagagtttgaATCTCCACTTGTAAGCATTTGATCAA
CCTTTCTTgctcttcaacttttttgttCAACGCAGtgatttcattttcag
aatCTGTGAGCTTTTCGTCTTTCGTTTCGAGCTGTTTGATTCTTTGCATC
CAAAAACTCATCTGTTCTCGAGTCACATAGCATTCGTCTGCTTTGTCCTG
GAAAATAATTAAGTAGGTTTGG

Coding sequence (CDS) from alignment at scaffold_15:522641..523362

>TCONS_00049066 ID=TCONS_00049066|Name=TCONS_00049066|organism=Clytia hemisphaerica|type=CDS|length=474bp|location=Sequence derived from alignment at scaffold_15:522641..523362 (Clytia hemisphaerica)
TCACGTGACTGAATCGTCAAAGGCTCCTTTTAAAGTTTTGAAGCCTATCG
ATAGTGATTTACCAACACTTTCCAAAACGCCATTAAAATACAGTGTCACT
TCTAACTTTTGTCCTTGTGTGgtatagaaatatttttctataaaattacT
GCTATAATAATTGCTTAAAGCTTGATTTCTTTTCTTCATAAATTGATTGA
TCTTCCATACATGGATATCACTGAGCAAAACGTTGGGATTCGGTTTTTTA
ACCGTGGTGttttgttttagagtttgaATCTCCACTTGTAAGCATTTGAT
CAACCTTTCTTgctcttcaacttttttgttCAACGCAGtgatttcatttt
cagaatCTGTGAGCTTTTCGTCTTTCGTTTCGAGCTGTTTGATTCTTTGC
ATCCAAAAACTCATCTGTTCTCGAGTCACATAGCATTCGTCTGCTTTGTC
CTGGAAAATAATTAAGTAGGTTTG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031176XLOC_031176Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049066-proteinTCONS_00049066-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00049066-exon-scaffold_15-1491911889:522641..523362TCONS_00049066-exon-scaffold_15-1491911889:522641..523362Clytia hemisphaericaexon
TCONS_00049066-exon-scaffold_15-1510915933:522641..523362TCONS_00049066-exon-scaffold_15-1510915933:522641..523362Clytia hemisphaericaexon
TCONS_00049066-exon-scaffold_15-1575043694:522641..523362TCONS_00049066-exon-scaffold_15-1575043694:522641..523362Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:522641..523362 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
13.3474	12.1391	4.30669	2.68127	0.932626	0.663276	2.48956	3.16308	2.56421	2.02121	0.98092	1.19752	1.83978	1.28967	2.35619	1.55927	3.01114	3.24596	0.88219	0.76929	1.13671	1.95687	3.33037	5.69513	3.11855	2.51816	0.568971	0.202407	1.30491	2.34617
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR008974TRAF-like
Vocabulary: Molecular Function
TermDefinition
GO:0005515protein binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0005515 protein binding
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00049066 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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