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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00049062 ID=TCONS_00049062|Name=TCONS_00049062|organism=Clytia hemisphaerica|type=transcript|length=980bp
attcctgaatttttttaaacacgAATGCTTTTTATTTCCTAATTTAGTAA
TTTATAGATCCTTGAAATATAGTAGTTATCTAAAAGTACTGCTAAAATGG
TTGATACGATATTCAATAAATTGTTACATTCAAACtcgaaattttacttt
taatatTATATTAATATTGCATAGACTATATATTTAAAAACagtaatttt
catcaaaaagaaTTTATGTTGAAATTTGTCAGTTTGAAATAAATTAATCC
CTTGTACAACGAGGTGTAAAAAGCATTCTTCCTCGGTAAGAATTCCAgcc
cagctagcacacaacgttgtttcaacgtttatttaccGTTCAAAACGTCc
acataacgttagatgaacgttgaaacaacgttgtctgTCAGCAGGGTTAC
TTTTTATATCCGTGGGTTTACACTGTTTTTGACAGCTATGGATTCCTAAA
CCATCATATTATCAAGCCTGTCTTTGGCGTTCGTTATTCATCAACAAATC
AACCAGTAGTTCTTTGGGCATTCTCTCATAAATCTGTCTTAAAAATGTAT
TCCGGTTATTTGGCCTTGTTACGTCATTGTTCATAATTATTTTATCCAAT
GATGCTTCATCCATAGAAATTTGTTTAGAATctgcagccattttgttttg
catGGATGATAGTGCCAACATGTCTCGTTTACCCAGATTACATTTCTTGC
TGCATATACGATGTTGTTCCAAGCAGATAAACTTATCACTGAAATTTTGA
ATAGCAGGATTATTGAGGCATAGATATTTATCATTAGTGCAGGAGCTTCG
GCAATCATCACTTCTTTTGTTTGGCATGCTTACCAAGAGCAGATCATTTC
TTATTGAGGCTTCATATGTGTTTGTGATGAACAACGATACCAACAATATT
GATAAAGCACCAAGAGATCTTAGTTTATCCATAGCTACCATTGGTTATTG
TAAATCTTGATACTTTATATACTGatctaa Run BLAST on NCBI protein sequence of TCONS_00049062-protein >TCONS_00049062-protein ID=TCONS_00049062-protein|Name=TCONS_00049062-protein|organism=Clytia hemisphaerica|type=polypeptide|length=159bp
MVAMDKLRSLGALSILLVSLFITNTYEASIRNDLLLVSMPNKRSDDCRSS
CTNDKYLCLNNPAIQNFSDKFICLEQHRICSKKCNLGKRDMLALSSMQNK
MAADSKQISMDEASLDKIIMNNDVTRPNNRNTFLRQIYERMPKELLVDLL
MNNERQRQA Run BLAST on NCBI transcript from alignment at scaffold_15:464186..465165 Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00049062 ID=TCONS_00049062|Name=TCONS_00049062|organism=Clytia hemisphaerica|type=transcript|length=980bp|location=Sequence derived from alignment at scaffold_15:464186..465165 (Clytia hemisphaerica)
ttagatCAGTATATAAAGTATCAAGATTTACAATAACCAATGGTAGCTAT
GGATAAACTAAGATCTCTTGGTGCTTTATCAATATTGTTGGTATCGTTGT
TCATCACAAACACATATGAAGCCTCAATAAGAAATGATCTGCTCTTGGTA
AGCATGCCAAACAAAAGAAGTGATGATTGCCGAAGCTCCTGCACTAATGA
TAAATATCTATGCCTCAATAATCCTGCTATTCAAAATTTCAGTGATAAGT
TTATCTGCTTGGAACAACATCGTATATGCAGCAAGAAATGTAATCTGGGT
AAACGAGACATGTTGGCACTATCATCCatgcaaaacaaaatggctgcagA
TTCTAAACAAATTTCTATGGATGAAGCATCATTGGATAAAATAATTATGA
ACAATGACGTAACAAGGCCAAATAACCGGAATACATTTTTAAGACAGATT
TATGAGAGAATGCCCAAAGAACTACTGGTTGATTTGTTGATGAATAACGA
ACGCCAAAGACAGGCTTGATAATATGATGGTTTAGGAATCCATAGCTGTC
AAAAACAGTGTAAACCCACGGATATAAAAAGTAACCCTGCTGAcagacaa
cgttgtttcaacgttcatctaacgttatgtgGACGTTTTGAACggtaaat
aaacgttgaaacaacgttgtgtgctagctgggcTGGAATTCTTACCGAGG
AAGAATGCTTTTTACACCTCGTTGTACAAGGGATTAATTTATTTCAAACT
GACAAATTTCAACATAAAttctttttgatgaaaattactGTTTTTAAATA
TATAGTCTATGCAATATTAATATAatattaaaagtaaaatttcgaGTTTG
AATGTAACAATTTATTGAATATCGTATCAACCATTTTAGCAGTACTTTTA
GATAACTACTATATTTCAAGGATCTATAAATTACTAAATTAGGAAATAAA
AAGCATTcgtgtttaaaaaaattcaggaat Coding sequence (CDS) from alignment at scaffold_15:464186..465165 >TCONS_00049062 ID=TCONS_00049062|Name=TCONS_00049062|organism=Clytia hemisphaerica|type=CDS|length=480bp|location=Sequence derived from alignment at scaffold_15:464186..465165 (Clytia hemisphaerica)
ATGGTAGCTATGGATAAACTAAGATCTCTTGGTGCTTTATCAATATTGTT
GGTATCGTTGTTCATCACAAACACATATGAAGCCTCAATAAGAAATGATC
TGCTCTTGGTAAGCATGCCAAACAAAAGAAGTGATGATTGCCGAAGCTCC
TGCACTAATGATAAATATCTATGCCTCAATAATCCTGCTATTCAAAATTT
CAGTGATAAGTTTATCTGCTTGGAACAACATCGTATATGCAGCAAGAAAT
GTAATCTGGGTAAACGAGACATGTTGGCACTATCATCCatgcaaaacaaa
atggctgcagATTCTAAACAAATTTCTATGGATGAAGCATCATTGGATAA
AATAATTATGAACAATGACGTAACAAGGCCAAATAACCGGAATACATTTT
TAAGACAGATTTATGAGAGAATGCCCAAAGAACTACTGGTTGATTTGTTG
ATGAATAACGAACGCCAAAGACAGGCTTGA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00049062-exon-scaffold_15-1491911889:464186..465165 | TCONS_00049062-exon-scaffold_15-1491911889:464186..465165 | Clytia hemisphaerica | exon |
| TCONS_00049062-exon-scaffold_15-1510915933:464186..465165 | TCONS_00049062-exon-scaffold_15-1510915933:464186..465165 | Clytia hemisphaerica | exon |
| TCONS_00049062-exon-scaffold_15-1575043694:464186..465165 | TCONS_00049062-exon-scaffold_15-1575043694:464186..465165 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_15 | supercontig | scaffold_15:464186..465165 . |
Blast
The following BLAST results are available for this feature:
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