TCONS_00048997 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048997
Unique NameTCONS_00048997
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1838

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048997 ID=TCONS_00048997|Name=TCONS_00048997|organism=Clytia hemisphaerica|type=transcript|length=1838bp
GTTCCGCGTACGTTTCTGTGAAAAACTTATTGTTCTTTAAGAACAATAGC
TAGAACAATTGATtattgttttgttgattttctttaaaCAATGGTTATAT
TAACAACTTCCTCTTTATTGTAGGGTTTAATGAGACCCAATTAGACAGGA
AAACATTTTAAGTAATTACAACAAGCGTTTTAATAGATATTTGAACTCTT
CTCTTTCTAATTGGCGTATATAAAAGAGCGTGGTCCATCATTTTCTGTCA
ATCTCAGAAAAAGCATCATATTGATTAAGACATGAACTAGTGTAGATGCA
ACAAACTGGTTCACATTATTtgcgaaaaattgattttgtattttatttgg
tGTTTCACGTAGTAACTAAAGCATAAAGCAGCAATAATAAATTAAACAAC
AGAATTTGTTTGTCCATTCTTGTGCTGGaaagaagatttatttttcattt
gaattGATTGGATGTTGAGCAGGAGAGTGAATACACAATAAAATCATGCA
GAATTTAGCATTACCAGATTTAAGAAGACAAATATTGGAAGATGTCCTTG
GCGATAGCGTGGAAGAATACGAGAATTTCAACAAGGAAGAGGCTGAAAGT
AAAAGACAACATCGTCAGCGTATCCCATTatggcaattcttattacatcT
ACTGAACCGAGACACAAACGAAAGATACATTCAGTGGAGTAAGGAATACG
AATTGGAGTTCCGGATCAAAGATACAGTCGGAGTAGCGGAACTATGGGGT
TCCGTAAAGAATAAAACCGACATGACTTATGAGAAACTTGGAAGAGCAAT
GCGATATTATTATGGGAAGAGCATCATTGAAAAGGTAACTGGAAGACGTT
ATTCGTACAGATTTATCCTGTCAAGGCGAACAAAGAAATACTTATCACAG
TTCATTAACGTCACTCAAATGACTATTCAACCGGCATCCGAATCTGATCA
CGAGATCAACGAAGATAACGCAATGTCACCACGCATGGCagatgaaaata
acaacaaacgCCGAAAGACCGTTAGTGTTAGTAGCCCACCTCCTCGTGAG
CGTACACAGAAAGACTATCGTACAGAATATAGTAGAAGTCCATCTTCGCA
ATTGAGTTGTCCAACTGCTATcactaaaacaaaaatttttcgtcCAGACG
AAAGTCTTTCTCGATATTTCGCCACCGCAGACCCTTCAATCCCACAAGAA
AAAGTcacgaaagaagaaaaaatctcaaCACCTTTAAAAATCAGAGATAC
TAGAAACTCCATCATTTATCATGATAGCACTCAAAGACGATCAGCATTCT
TTGTTCCAGAGAAATCGGTAAGCATTACCCGAGAAAATGCACCATCACTT
ATCCAAGCTCTTCAAACCATGCCTTTATCTCCTGTATCTTCAGAAACACA
AGTTACCCGTTCCCCAActtatcaggaaaatcgaaaacgCTCTTATCCGT
ACCCGACTAAATCGAGTATACGTGAGAAGAACGCTATTGCTTATTGCTGT
TGCGGATCACACAATTGTAAAATCAAATACGTTGATTATGCTAGTGAAGA
AAGCGAATGTGAATCATCTTATTCTCGTGAAAGCATTTCCCCAATCGCTG
TTATGGAAAAACCGAAAAAAACGACTGCATCGATGATGAATTCGCGAACG
AATTATATCGATTCGTACGGTTTACACGATTTTCATGAGGAATCGATTCG
TAAAGAACTGAGAGAATTAAAAGATTACAGAGAACGTGAAAAGAATGAAA
TTATGATTATGAAACAATCTTTAGGTGGTTCAAAACTGGATCCATTCATG
GGGTACAAGGACGCAGGACCACTCATGGATGATTTTTT
Run BLAST on NCBI

protein sequence of TCONS_00048997-protein

>TCONS_00048997-protein ID=TCONS_00048997-protein|Name=TCONS_00048997-protein|organism=Clytia hemisphaerica|type=polypeptide|length=447bp
MQNLALPDLRRQILEDVLGDSVEEYENFNKEEAESKRQHRQRIPLWQFLL
HLLNRDTNERYIQWSKEYELEFRIKDTVGVAELWGSVKNKTDMTYEKLGR
AMRYYYGKSIIEKVTGRRYSYRFILSRRTKKYLSQFINVTQMTIQPASES
DHEINEDNAMSPRMADENNNKRRKTVSVSSPPPRERTQKDYRTEYSRSPS
SQLSCPTAITKTKIFRPDESLSRYFATADPSIPQEKVTKEEKISTPLKIR
DTRNSIIYHDSTQRRSAFFVPEKSVSITRENAPSLIQALQTMPLSPVSSE
TQVTRSPTYQENRKRSYPYPTKSSIREKNAIAYCCCGSHNCKIKYVDYAS
EESECESSYSRESISPIAVMEKPKKTTASMMNSRTNYIDSYGLHDFHEES
IRKELRELKDYREREKNEIMIMKQSLGGSKLDPFMGYKDAGPLMDDF
Run BLAST on NCBI

transcript from alignment at scaffold_15:374909..378284+

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048997 ID=TCONS_00048997|Name=TCONS_00048997|organism=Clytia hemisphaerica|type=transcript|length=3376bp|location=Sequence derived from alignment at scaffold_15:374909..378284+ (Clytia hemisphaerica)
GTTCCGCGTACGTTTCTGTGAAAAACTTATTGTTCTTTAAGAACAATAGC
TAGAACAATTGATtattgttttgttgattttctttaaaCAATGGTTATAT
TAACAACTTCCTCTTTATTGTAGGGTTTAATGAGACCCAATTAGACAGGA
AAACATTTTAAGTAATTACAACAAGCGTTTTAATAGATATTTGAACTCTT
CTCTTTCTAATTGGCGTATATAAAAGAGCGTGGTCCATCATTTTCTGTCA
ATCTCAGAAAAAGCATCATATTGATTAAGACATGAACTAGTGTAGATGCA
ACAAACTGGTTCACATTATTtgcgaaaaattgattttgtattttatttgg
tGTTTCACGTAGTAACTAAAGCATAAAGCAGCAATAATAAATTAAACAAC
AGAATTTGTTTGTCCATTCTTGTGCTGGaaagaagatttatttttcattt
gaattGATTGGATGTTGAGCAGGAGAGTGAATACACAATAAAATCATGCA
GAATTTAGCATTACCAGATTTAAGAAGACAAATATTGGAAGATGTCCTTG
GCGATAGGTATGtttaaaaattccaaattttaagCACCGGGCCTACAGAG
CCTAAAAAAATTGTACTTTTCAAGAAGAACTCGGGCTTTGCTTCTCTTGT
ATCTGGctttaaaaatcattttcctTGTAAATCTGATATCttgttccaaa
aaaaaaacggtaGATTATCTGTAATCTCGAAcatttccttatttttcttt
tcttttgttgttttcagCGTGGAAGAATACGAGAATTTCAACAAGGAAGA
GGCTGAAAGTAAAAGACGTAAGTAATTTTAATCTTTACATTTTTACGaat
acttgaaaattttgaaagctaAGTCGTTTTTAGAAACACCAAAATTGTTT
TTGGTTTTGCATGTACAAATTGACGCCAGTCAACTGGGATAATTTGCAAT
AAAATAGTTAACAACAAATCAATTCGCAACTCAAATTATGTTATAATGCT
TTCCAATGATTTCCTCTCTATTACATTAATAAGTTCCTTTTAGAgagttg
tcaatttttttcccgCTCTTAATTGTTAGTATGTAGCAATGTCATACAGT
GACAATTctctagaaaaattaaaagattaaaGCCAAATCTCTTTTTTTCC
GTGTTTGCccgaaaaaatttcataaaaatcaaataataagCTCATTTCGA
GGGTCAGTGTTTTCTGAGTATTTAGTTTAAAAGATATTCATATTTTGTTA
ATTTACGtgatttccgccattatggaagcctTCCATAATGGTAATAATTA
CGTaatttaacaaaacatgaaaaatctcTATCAGACACAAAAAGATATTA
GTTAGCGTTCATTAGCGTCTTTTATTTCTTCCATGAAAAGTCCATAGCCC
TTTTTAGCCACGCAAACGCTATTTACCGCTTACTCACTGATAGCCTATAA
AATGCATAATTTCATGACCCATTTAGCCTGCGCTAACCCGGTGGGTAGAC
TGCATGCGGTGTGGGTTAAACGAATCAATTAAAATACCATTGACAACGTG
AGCGGgcgttggaaaatttttgtaaaaaacaatttcaggaaCAAATAACA
AGTCAATTACTGGAATATTAAGTGGGTTTGATTCACTTtaagaagaaaag
ttctttcTGATAGCCTAGCGGTATGGTCTATCTTCCTCCAGTGAAGAAGT
GTCAAGCGTCACGAACCTTTTCTCATTACGCGCCTTGGTGCACCTTCTTT
TATCACCTTTAACCCGATTATGTTTGATCTATACAGAACATCGTCAGCGT
ATCCCATTatggcaattcttattacatcTACTGAACCGAGACACAAACGA
AAGATACATTCAGTGGAGTAAGGAATACGAATTGGAGTTCCGGATCAAAG
ATACAGTCGGAGTAGCGGAACTATGGGGTTCCGTAAAGAATAAAACCGAC
ATGACTTATGAGAAACTTGGAAGAGCAATGCGATATTATTATGGGAAGAG
CATCATTGAAAAGGTGAggagcatacacgttttttaggccttcaggtgtt
cttaactttttgtgttttaagcctaaaaatgttcttatttttaccatttt
gtcagtattttggcccattttctcttaaaagatttttagaGTTTAACCTG
TTCTTGATATtctggccatcgaaaccttattatgttcttatatagtttgt
tgttataataaaaaaatgtgtatttagcTTAAGTCTTAGCATTTTTTTTA
GCCTACGTGTTTTAGAATTTGCTGATATgaaagaggaagaaaaaagattt
tttcaataaatatttCTGAGAAATTTACGTGTGTTTTTCTAAGGTTTTCT
CTATTGATTTTTGCGCATCTAGGTAACTGGAAGACGTTATTCGTACAGAT
TTATCCTGTCAAGGCGAACAAAGAAATACTTATCACAGTTCATTAACGTC
ACTCAAATGACTATTCAACCGGCATCCGAATCTGATCACGAGATCAACGA
AGATAACGCAATGTCACCACGCATGGCagatgaaaataacaacaaacgCC
GAAAGACCGTTAGTGTTAGTAGCCCACCTCCTCGTGAGCGTACACAGAAA
GACTATCGTACAGAATATAGTAGAAGTCCATCTTCGCAATTGAGTTGTCC
AACTGCTATcactaaaacaaaaatttttcgtcCAGACGAAAGTCTTTCTC
GATATTTCGCCACCGCAGACCCTTCAATCCCACAAGAAAAAGTcacgaaa
gaagaaaaaatctcaaCACCTTTAAAAATCAGAGATACTAGAAACTCCAT
CATTTATCATGATAGCACTCAAAGACGATCAGCATTCTTTGTTCCAGAGA
AATCGGTAAGCATTACCCGAGAAAATGCACCATCACTTATCCAAGCTCTT
CAAACCATGCCTTTATCTCCTGTATCTTCAGAAACACAAGTTACCCGTTC
CCCAActtatcaggaaaatcgaaaacgCTCTTATCCGTACCCGACTAAAT
CGAGTATACGTGAGAAGAACGCTATTGCTTATTGCTGTTGCGGATCACAC
AATTGTAAAATCAAATACGTTGATTATGCTAGTGAAGAAAGCGAATGTGA
ATCATCTTATTCTCGTGAAAGCATTTCCCCAATCGCTGTTATGGAAAAAC
CGAAAAAAACGACTGCATCGATGATGAATTCGCGAACGAATTATATCGAT
TCGTACGGTTTACACGATTTTCATGAGGAATCGATTCGTAAAGAACTGAG
AGAATTAAAAGATTACAGAGAACGTGAAAAGAATGAAATTATGATTATGA
AACAATCTTTAGGTGGTTCAAAACTGGATCCATTCATGGGGTACAAGGAC
GCAGGACCACTCATGGATGATTTTTT

Coding sequence (CDS) from alignment at scaffold_15:374909..378284+

>TCONS_00048997 ID=TCONS_00048997|Name=TCONS_00048997|organism=Clytia hemisphaerica|type=CDS|length=5364bp|location=Sequence derived from alignment at scaffold_15:374909..378284+ (Clytia hemisphaerica)
ATGCAGAATTTAGCATTACCAGATTTAAGAAGACAAATATTGGAAGATGT
CCTTGGCGATAGCGTGGAAGAATACGAGAATTTCAACAAGGAAGAGGCTG
AAAGTAAAAGACAACATCGTCAGCGTATCCCATTatggcaattcttatta
catcTACTGAACCGAGACACAAACGAAAGATACATTCAGTGGAGTAAGGA
ATACGAATTGGAGTTCCGGATCAAAGATACAGTCGGAGTAGCGGAACTAT
GGGGTTCCGTAAAGAATAAAACCGACATGACTTATGAGAAACTTGGAAGA
GCAATGCGATATTATTATGGGAAGAGCATCATTGAAAAGGTAACTGGAAG
ACGTTATTCGTACAGATTTATCCTGTCAAGGCGAACAAAGAAATACTTAT
CACAGTTCATTAACGTCACTCAAATGACTATTCAACCGGCATCCGAATCT
GATCACGAGATCAACGAAGATAACGCAATGTCACCACGCATGGCagatga
aaataacaacaaacgCCGAAAGACCGTTAGTGTTAGTAGCCCACCTCCTC
GTGAGCGTACACAGAAAGACTATCGTACAGAATATAGTAGAAGTCCATCT
TCGCAATTGAGTTGTCCAACTGCTATcactaaaacaaaaatttttcgtcC
AGACGAAAGTCTTTCTCGATATTTCGCCACCGCAGACCCTTCAATCCCAC
AAGAAAAAGTcacgaaagaagaaaaaatctcaaCACCTTTAAAAATCAGA
GATACTAGAAACTCCATCATTTATCATGATAGCACTCAAAGACGATCAGC
ATTCTTTGTTCCAGAGAAATCGGTAAGCATTACCCGAGAAAATGCACCAT
CACTTATCCAAGCTCTTCAAACCATGCCTTTATCTCCTGTATCTTCAGAA
ACACAAGTTACCCGTTCCCCAActtatcaggaaaatcgaaaacgCTCTTA
TCCGTACCCGACTAAATCGAGTATACGTGAGAAGAACGCTATTGCTTATT
GCTGTTGCGGATCACACAATTGTAAAATCAAATACGTTGATTATGCTAGT
GAAGAAAGCGAATGTGAATCATCTTATTCTCGTGAAAGCATTTCCCCAAT
CGCTGTTATGGAAAAACCGAAAAAAACGACTGCATCGATGATGAATTCGC
GAACGAATTATATCGATTCGTACGGTTTACACGATTTTCATGAGGAATCG
ATTCGTAAAGAACTGAGAGAATTAAAAGATTACAGAGAACGTGAAAAGAA
TGAAATTATGATTATGAAACAATCTTTAGGTGGTTCAAAACTGGATCCAT
TCATGGGGTACAAGGACGCAGGACCACTCATGGATGATTTTATGCAGAAT
TTAGCATTACCAGATTTAAGAAGACAAATATTGGAAGATGTCCTTGGCGA
TAGCGTGGAAGAATACGAGAATTTCAACAAGGAAGAGGCTGAAAGTAAAA
GACAACATCGTCAGCGTATCCCATTatggcaattcttattacatcTACTG
AACCGAGACACAAACGAAAGATACATTCAGTGGAGTAAGGAATACGAATT
GGAGTTCCGGATCAAAGATACAGTCGGAGTAGCGGAACTATGGGGTTCCG
TAAAGAATAAAACCGACATGACTTATGAGAAACTTGGAAGAGCAATGCGA
TATTATTATGGGAAGAGCATCATTGAAAAGGTAACTGGAAGACGTTATTC
GTACAGATTTATCCTGTCAAGGCGAACAAAGAAATACTTATCACAGTTCA
TTAACGTCACTCAAATGACTATTCAACCGGCATCCGAATCTGATCACGAG
ATCAACGAAGATAACGCAATGTCACCACGCATGGCagatgaaaataacaa
caaacgCCGAAAGACCGTTAGTGTTAGTAGCCCACCTCCTCGTGAGCGTA
CACAGAAAGACTATCGTACAGAATATAGTAGAAGTCCATCTTCGCAATTG
AGTTGTCCAACTGCTATcactaaaacaaaaatttttcgtcCAGACGAAAG
TCTTTCTCGATATTTCGCCACCGCAGACCCTTCAATCCCACAAGAAAAAG
TcacgaaagaagaaaaaatctcaaCACCTTTAAAAATCAGAGATACTAGA
AACTCCATCATTTATCATGATAGCACTCAAAGACGATCAGCATTCTTTGT
TCCAGAGAAATCGGTAAGCATTACCCGAGAAAATGCACCATCACTTATCC
AAGCTCTTCAAACCATGCCTTTATCTCCTGTATCTTCAGAAACACAAGTT
ACCCGTTCCCCAActtatcaggaaaatcgaaaacgCTCTTATCCGTACCC
GACTAAATCGAGTATACGTGAGAAGAACGCTATTGCTTATTGCTGTTGCG
GATCACACAATTGTAAAATCAAATACGTTGATTATGCTAGTGAAGAAAGC
GAATGTGAATCATCTTATTCTCGTGAAAGCATTTCCCCAATCGCTGTTAT
GGAAAAACCGAAAAAAACGACTGCATCGATGATGAATTCGCGAACGAATT
ATATCGATTCGTACGGTTTACACGATTTTCATGAGGAATCGATTCGTAAA
GAACTGAGAGAATTAAAAGATTACAGAGAACGTGAAAAGAATGAAATTAT
GATTATGAAACAATCTTTAGGTGGTTCAAAACTGGATCCATTCATGGGGT
ACAAGGACGCAGGACCACTCATGGATGATTTTATGCAGAATTTAGCATTA
CCAGATTTAAGAAGACAAATATTGGAAGATGTCCTTGGCGATAGCGTGGA
AGAATACGAGAATTTCAACAAGGAAGAGGCTGAAAGTAAAAGACAACATC
GTCAGCGTATCCCATTatggcaattcttattacatcTACTGAACCGAGAC
ACAAACGAAAGATACATTCAGTGGAGTAAGGAATACGAATTGGAGTTCCG
GATCAAAGATACAGTCGGAGTAGCGGAACTATGGGGTTCCGTAAAGAATA
AAACCGACATGACTTATGAGAAACTTGGAAGAGCAATGCGATATTATTAT
GGGAAGAGCATCATTGAAAAGGTAACTGGAAGACGTTATTCGTACAGATT
TATCCTGTCAAGGCGAACAAAGAAATACTTATCACAGTTCATTAACGTCA
CTCAAATGACTATTCAACCGGCATCCGAATCTGATCACGAGATCAACGAA
GATAACGCAATGTCACCACGCATGGCagatgaaaataacaacaaacgCCG
AAAGACCGTTAGTGTTAGTAGCCCACCTCCTCGTGAGCGTACACAGAAAG
ACTATCGTACAGAATATAGTAGAAGTCCATCTTCGCAATTGAGTTGTCCA
ACTGCTATcactaaaacaaaaatttttcgtcCAGACGAAAGTCTTTCTCG
ATATTTCGCCACCGCAGACCCTTCAATCCCACAAGAAAAAGTcacgaaag
aagaaaaaatctcaaCACCTTTAAAAATCAGAGATACTAGAAACTCCATC
ATTTATCATGATAGCACTCAAAGACGATCAGCATTCTTTGTTCCAGAGAA
ATCGGTAAGCATTACCCGAGAAAATGCACCATCACTTATCCAAGCTCTTC
AAACCATGCCTTTATCTCCTGTATCTTCAGAAACACAAGTTACCCGTTCC
CCAActtatcaggaaaatcgaaaacgCTCTTATCCGTACCCGACTAAATC
GAGTATACGTGAGAAGAACGCTATTGCTTATTGCTGTTGCGGATCACACA
ATTGTAAAATCAAATACGTTGATTATGCTAGTGAAGAAAGCGAATGTGAA
TCATCTTATTCTCGTGAAAGCATTTCCCCAATCGCTGTTATGGAAAAACC
GAAAAAAACGACTGCATCGATGATGAATTCGCGAACGAATTATATCGATT
CGTACGGTTTACACGATTTTCATGAGGAATCGATTCGTAAAGAACTGAGA
GAATTAAAAGATTACAGAGAACGTGAAAAGAATGAAATTATGATTATGAA
ACAATCTTTAGGTGGTTCAAAACTGGATCCATTCATGGGGTACAAGGACG
CAGGACCACTCATGGATGATTTTATGCAGAATTTAGCATTACCAGATTTA
AGAAGACAAATATTGGAAGATGTCCTTGGCGATAGCGTGGAAGAATACGA
GAATTTCAACAAGGAAGAGGCTGAAAGTAAAAGACAACATCGTCAGCGTA
TCCCATTatggcaattcttattacatcTACTGAACCGAGACACAAACGAA
AGATACATTCAGTGGAGTAAGGAATACGAATTGGAGTTCCGGATCAAAGA
TACAGTCGGAGTAGCGGAACTATGGGGTTCCGTAAAGAATAAAACCGACA
TGACTTATGAGAAACTTGGAAGAGCAATGCGATATTATTATGGGAAGAGC
ATCATTGAAAAGGTAACTGGAAGACGTTATTCGTACAGATTTATCCTGTC
AAGGCGAACAAAGAAATACTTATCACAGTTCATTAACGTCACTCAAATGA
CTATTCAACCGGCATCCGAATCTGATCACGAGATCAACGAAGATAACGCA
ATGTCACCACGCATGGCagatgaaaataacaacaaacgCCGAAAGACCGT
TAGTGTTAGTAGCCCACCTCCTCGTGAGCGTACACAGAAAGACTATCGTA
CAGAATATAGTAGAAGTCCATCTTCGCAATTGAGTTGTCCAACTGCTATc
actaaaacaaaaatttttcgtcCAGACGAAAGTCTTTCTCGATATTTCGC
CACCGCAGACCCTTCAATCCCACAAGAAAAAGTcacgaaagaagaaaaaa
tctcaaCACCTTTAAAAATCAGAGATACTAGAAACTCCATCATTTATCAT
GATAGCACTCAAAGACGATCAGCATTCTTTGTTCCAGAGAAATCGGTAAG
CATTACCCGAGAAAATGCACCATCACTTATCCAAGCTCTTCAAACCATGC
CTTTATCTCCTGTATCTTCAGAAACACAAGTTACCCGTTCCCCAActtat
caggaaaatcgaaaacgCTCTTATCCGTACCCGACTAAATCGAGTATACG
TGAGAAGAACGCTATTGCTTATTGCTGTTGCGGATCACACAATTGTAAAA
TCAAATACGTTGATTATGCTAGTGAAGAAAGCGAATGTGAATCATCTTAT
TCTCGTGAAAGCATTTCCCCAATCGCTGTTATGGAAAAACCGAAAAAAAC
GACTGCATCGATGATGAATTCGCGAACGAATTATATCGATTCGTACGGTT
TACACGATTTTCATGAGGAATCGATTCGTAAAGAACTGAGAGAATTAAAA
GATTACAGAGAACGTGAAAAGAATGAAATTATGATTATGAAACAATCTTT
AGGTGGTTCAAAACTGGATCCATTCATGGGGTACAAGGACGCAGGACCAC
TCATGGATGATTTT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031121XLOC_031121Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048997-exon-scaffold_15-1491911889:374909..375465TCONS_00048997-exon-scaffold_15-1491911889:374909..375465Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1510915933:374909..375465TCONS_00048997-exon-scaffold_15-1510915933:374909..375465Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1575043694:374909..375465TCONS_00048997-exon-scaffold_15-1575043694:374909..375465Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1491911889:375676..375725TCONS_00048997-exon-scaffold_15-1491911889:375676..375725Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1510915933:375676..375725TCONS_00048997-exon-scaffold_15-1510915933:375676..375725Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1575043694:375676..375725TCONS_00048997-exon-scaffold_15-1575043694:375676..375725Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1491911889:376695..376921TCONS_00048997-exon-scaffold_15-1491911889:376695..376921Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1510915933:376695..376921TCONS_00048997-exon-scaffold_15-1510915933:376695..376921Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1575043694:376695..376921TCONS_00048997-exon-scaffold_15-1575043694:376695..376921Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1491911889:377281..378284TCONS_00048997-exon-scaffold_15-1491911889:377281..378284Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1510915933:377281..378284TCONS_00048997-exon-scaffold_15-1510915933:377281..378284Clytia hemisphaericaexon
TCONS_00048997-exon-scaffold_15-1575043694:377281..378284TCONS_00048997-exon-scaffold_15-1575043694:377281..378284Clytia hemisphaericaexon
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048997-proteinTCONS_00048997-proteinClytia hemisphaericapolypeptide
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_15supercontigscaffold_15:374909..378284 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.435577	0.552183	0.123296	0.0723753	22.9967	15.0624	34.5522	34.2347	43.459	21.6188	35.9437	129.134	4.51914	3.35442	11.3032	12.3291	3.40065	3.15041	7.70942	6.34728	1.11602	1.01682	3.04649	3.29185	4.48953	5.90586	3.04604	1.62541	2.10304	1.15753
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000418Ets_dom
IPR011991WHTH_DNA-bd_dom
Vocabulary: Biological Process
TermDefinition
GO:0006355regulation of transcription, DNA-templated
Vocabulary: Molecular Function
TermDefinition
GO:0003700transcription factor activity, sequence-specific DNA binding
GO:0043565sequence-specific DNA binding
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006355 regulation of transcription, DNA-templated
molecular_function GO:0043565 sequence-specific DNA binding
molecular_function GO:0003700 transcription factor activity, sequence-specific DNA binding
Blast
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BLAST of TCONS_00048997 vs. Swiss-Prot (Human)
Match: ELK1 (ETS domain-containing protein Elk-1 OS=Homo sapiens GN=ELK1 PE=1 SV=2)

HSP 1 Score: 95.9005 bits (237), Expect = 4.507e-21
Identity = 41/80 (51.25%), Postives = 54/80 (67.50%), Query Frame = 1 
Query:  628 LWQFLLHLLNRDTNERYIQWSKEYELEFRIKDTVGVAELWGSVKNKTDMTYEKLGRAMRYYYGKSIIEKVTGRRYSYRFI 867
            LWQFLL LL    N   I W+     EF++ D   VA LWG  KNKT+M Y+KL RA+RYYY K+II KV+G+++ Y+F+
Sbjct:    7 LWQFLLQLLREQGNGHIISWTSRDGGEFKLVDAEEVARLWGLRKNKTNMNYDKLSRALRYYYDKNIIRKVSGQKFVYKFV 86
The following BLAST results are available for this feature:
BLAST of TCONS_00048997 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1
Match NameE-valueIdentityDescription
ELK14.507e-2151.25ETS domain-containing protein Elk-1 OS=Homo sapien... [more]
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