TCONS_00048982 (transcript) - C. hemisphaerica

Overview


Name	TCONS_00048982
Unique Name	TCONS_00048982
Type	transcript
Organism	Clytia hemisphaerica (Jellyfish)
Sequence length	1919

Sequence

The following sequences are available for this feature:

transcript sequence
transcript from alignment at scaffold_15:259853..270344+

transcript sequence

>TCONS_00048982 ID=TCONS_00048982|Name=TCONS_00048982|organism=Clytia hemisphaerica|type=transcript|length=1919bp
ATATCTTATGATTTTGGTTAGATAGATGCTCTTTGTTGTAAGTAAGTATC
AGAAGCAAGTAGTAAATGCGGATTCACGAGTTTATTAATCAGAATCATGA
AAGGGTCAAGCAGTGAGCAACAAATGATCTTCAGCATTGATGGATTGCGG
CCACCTGTCCGAAAAATTTACGATGACCTTATTCAGTTCTTGGACACTGA
AGTCTACCCACGTGAGAAAGAAATCATGGCTGAGAGACCTGAAAGCGTAC
GATGGACTGTTCACCCATTAATAGAAGAATTAAAGGAGAAAGCCAAATCA
CAAGGATTGTGGAACCTCTTCATTCCGGCTGAAACTGATCCCGAACAAAA
ATACGGTGCTGGTTTTACGAATGTTGAATATGCATTGTTTTGTGAACAAA
TGGGGAAATGTCTCTACGCACCAGAGATTTTCAATTGTGCGGCACCAGAC
ACAGGAAATATGGAAGTCTTGATCAAATACGGGACTGAAGAACAAAAGGA
GAAATGGTTGACCCCGTTATTGGATGGCAAAATACGATCTTGTTTTGGTA
TGACAGAACCACAGGTAGCTTCGTCTGACGCTTCGAACATCGAATCGAGG
ATCGAGAGACATGGGGACGAATACGTCATCAATGGTCGAAAATGGTGGAC
TTCAGGTGCGAATCATCCAGATTGTAAAATCTGCGTTTTCATGGGCAAGA
CAGACTTCACTGCTGACAGAACAAAACAACAGTCGATGATTTTGGTGCCG
ATGGATGCACCAGGAGTGAGAGTGATTCGTCCTTTGACAGTTTTTGGTTT
TGATGATGCACCTCATGGACATGCTGAAGTCGAATTCACCGATGTTCGCG
TGCCAGCATCCAATATTTTGCTCGGTGAAGGACGAGGATTCGAAATTGCA
CAGgGTCGTCTTGGGCCAGGTCGTATCCACCACTGTATGCGCTTGATCGG
TTATGCTGAACGCGCGCTCGATATGATGATCGAGCGGACGAGTTCGCGCG
TAGCTTTTGGTGCTCCCATACTGAAACAAGGAACCATTCAATCTGATATC
GCTGAATCAAGGATGGAAATTGAACAAGCAAGATTATTAACGTTGAAAGC
AGCCCATATGATGGATACTGTTGGTAACAAGAAAGCAGCCAAAGAGATAG
CGATGATCAAAGTAGTGGCACCACGAATGGCTCAAGCAGTTATTGATCGT
GCTATGCAGTCATTTGGTGGTATGGGATTATCTGGTGATACCCCTTTGGC
TGGTTTGTTCATATGGGCACGAGTGCTTCGATTGGCTGACGGACCTGATG
AAGTCCATAAGAGAAGTATCGCCAGGATGGAGATTGCTCAACAGCTGAAA
GGTCGTTTGTAGTTAGAAAtgggaattttttattttgttctgtTCTAAAT
ACTGCACGCATTTAAATACTTGATTTTTATAAACCTCGTTCCttgtgtat
tatcagcttttttatgcttactgatagcgctagatagtTCTCTGGCGTCT
ATCAGTAATGTAAGTAAAGCCTGGAACACATGGGGACGAggtttagtttt
tattttacttttgtaTTTCGGGAACGGGATTGAGATTACAAATTGTCATA
CCCTTTCAATTATCTGTCATTATCGAATATCCGTTAAATAAATCGAATAG
CTAGAACCCTTAAGGGGTTGATTTTAGAATCCATTCATCCTAACTGACAT
AAGTTTTTCAGATAAATAATTTGACTAGGAAAACTCGAATGTTGTATAGG
GGATGATCACATATAAGGGTTTTTAAAGTAACTAAAAgtagtttttttga
atttttccttttaaaattttgtaaatataattttcagataatttttctta
gattagataaaaaataatcaatgaattttcatatttttgtaaataaatat
aCAATACACAgaataaaaa

Run BLAST on NCBI

transcript from alignment at scaffold_15:259853..270344+

Legend: exon

Hold the cursor over a type above to highlight its positions in the sequence below.

>TCONS_00048982 ID=TCONS_00048982|Name=TCONS_00048982|organism=Clytia hemisphaerica|type=transcript|length=10492bp|location=Sequence derived from alignment at scaffold_15:259853..270344+ (Clytia hemisphaerica)
ATATCTTATGATTTTGGTTAGATAGATGCTCTTTGTTGTAAGTAAGTATC
AGAAGCAAGTAGTAAATGCGGATTCACGAGTTTATTAATCAGAATCATGA
AAGGTAGAGAAATTATTCTTTTTAGTTTCTGGATAATATTTCTGGTGTAT
CTTATAACTTTCCCTAAATCAACCACTTAAAATTGGGTTGACAAACCAAG
ATGTTTGTCTGAGGGGGTAactttttggtcttttttaaaaacataatgAG
ATGTGTTTTTTCAAAGAACAAAGATTCTTTGAAACAGATATTCATAAATA
ACGGTTTAGTAGACTTCAAACTATCTGATTACCAATACCAGTCTGAGAAA
TTGTTTGTTATGGAATCTTAAAGGTCGTTGTTAGCATAGCTATCAGTGtt
caaagttcttccgtctcacaAAGATTTCAACCTCAGCGAAGTATATAAAG
ATGTTTTttcgtctcaaaattctgcataatctccaaaaattgtttgaaaa
tatgCGCTAAATTGTTatataaaatccattttccttCTCGTACGAAAAAC
CTTGCTCATCACGATAACCCACTATATCATTTTGTTGATAGGGTCAAGCA
GTGAGCAACAAATGATCTTCAGCATTGATGGATTGCGGCCACCTGTCCGA
AAAATTTACGATGACCTTATTCAGTTCTTGGACACTGAAGTCTACCCACG
TGAGAAAGAAATCATGGCTGAGAGACCTGAAAGCGTACGATGGACTGTTC
ACCCATTAATAGAAGAATTAAAGGTCAATTATTTTTCTTAGTCTTGGTTG
TTGATAGTTTGATTGACCTTTTGTTTGTAAACATTGttgaatttagcaaa
aagtatCTCAGAGGGATGAGCAAAAGAGTTTATTAGTGAACCGGCCAAcc
ggggcacttaggcaaaattgggtacggggacgtgccgctggtcagggtca
tTTATATCAATTTACTAGTTTTGAAGATGCGtttctgacagggtcgactt
ttggtaatttttgacaattttcagggtggaaactATAAAATTATTAAGAT
TTTTCGTCTATTTTTAGTCAATTTAGCCACTTTCAGGTTGAAAATGGGAa
acattttcgatttttctttcTGACAGGGTTCCAAATCTATAAATTTTCAT
TGTGGCAGTGTCCATTTTTTAAACTGCAGCGGTACGtacccgtcggccgt
caaggtcagtgtgCCCCCCACCCCCGGGACGGGCCAGCACAATCTTGCAA
AATATCATGTTTAAGGTGAATGGCGCTCCTCCTAGCATAATAGACTGCGA
TCAATTTAGCACAAGTTGATAGTAGTTAAAACAAACATACAGTACAAATT
GTTAGTCGACTACGATACCTGATACCTTGTAAACTTTCGAGCACTCGTTC
gttcagaatttgaaaacattacCAGAAAATACAAATGCTATTTCTCATTA
TATGAAGTTCAACAACACTTAGTGACAACAGCAGTATATGCTCGCTTACC
CGAGCCGCACTGAAGAGCcctgggaaggacgaaacacgtgtctgcggata
gatGTATTACGCTCAGAACTTTGGTTTATTGAGCACTCTATAGACTCTGT
TGAGGAGCAAACTCTCCTTCTCCGTTCACAACAAGCGAATATGCGAAGCT
CAAAACTTAGCgttttgagcactctggtgacaacagtagtctatgctcgc
ttacccGAGCCGCACTGGAAAGGACGAAACACATGTCTGCGGATAAGTGT
TATTTCTCACTATAATTTCAAAAGATATAAAGACGATTTCAAAAGATGAT
GCAAGCGCCGCCTCCTTTGTATTCATCCCACTGCCAATGGAACCAATTTA
CAGCTATTAGTCTTCAGCGTGATTTATTTGGaaatttgcttgtttttttt
tcgtagGAGAAAGCCAAATCACAAGGATTGTGGAACCTCTTCATTCCGGC
TGAAACTGATCCCGAACAAAAATACGGTGCTGGTTTTACGAATGTTGAAT
ATGCATTGTTTTGTGAACAAATGGGGAAATGTCTCTACGCACCAGAGGTA
AGCTGAACCAGGTTGAACTCGGGTTAACTCGCTGAGCATTGTGGTACCCT
AATGTTGGCAATATTCAATAGTGGTATAGATGCATTATACCTTATTGGTT
TGAACTTGCCACTAAtcccatttttaatttttatctgTCGAATATtcatc
aagctcgactgaataTTTGTCAATACCCGATTTTTTCTTGTCGAATCTCT
GCTTAATAGCACTCACGGCGAACCGTGGTGCAGGGGAAGAgtatccggct
acggttcgcaaggttgtgggttcaactcCCAGCCGAGTCAtgccaaagat
tctcaaaatggtacttgatgactctctgcttgatgctcagcaattaagag
aaggatcaagggtaagtggagaaatccagagagaaagagtggcgccctcc
cctactaTCGGGTAGATAGAgccgaaagaggagccttttggtcgcctccg
actgtggtCGCAGACTTGCTATGACTCGAACTTAACTGaacattttgctt
ttttttacttgatgtTCAGATTTTCAATTGTGCGGCACCAGACACAGGAA
ATATGGAAGTCTTGATCAAATACGGGACTGAAGAACAAAAGGTATAATTT
CAGTTATCCTTACTGAAAACTCATAACTTACTAATTTTTTGCTCACTGTA
AATTTGCAGAAAGATTCAATTGGTtgactacacgtttttatataagaaca
aactgtataagaacgtaaggctttgatgaccaaaatgctaagaacaagtt
aagaacattttaaggctttgggaacTCTAAATcaaccgatttcttaggaa
cacGGACAAAAATGCccacaaaatgttgaaaataagaacattttaagaat
atttttaggctttaaatctcaaaaagttaagaacatttgaaggcttcaaa
aaattcggatgttctaataaaaaaaacatgtaatctaCTAACCACTCACA
AAAGATAAATACTTCTGGCATGAGGTTTTCAATCTAAATCACGTTGCTTA
TTTTAGCCCTCCCCCggtttttatttggcattttggTTTCAATagttaag
taaaaaaaatatgatTATCTTTCATAGGAGAAATGGTTGACCCCGTTATT
GGATGGCAAAATACGATCTTGTTTTGGTATGACAGAACCACAGGTTATTA
TTATTTTGCGTtgccttattggaactaatattcgcggtcgaaaaaTAAAA
TCGGAAATAATTGCATTTCACGGGTTTTAAtgttcgcggttttgcccttt
tttggacgaatttctttcactttcctagagatttttcaaatttttcgata
gaattggaaaaaattgtattttgcgggttcaaattttcacggctttgcca
aaaaaccgcgaaaaacgctaaaattaattcccgcaaaaattaattccaaa
TATGGTATTTTGTATTCTTGATGCTGTCTTTATTCTCGTactttctcgaa
attcacgttTCTTTTTAGAacaactatataagaacataaggcttcgctgg
ccaatgttaaggacattttaaggctttgtggactcaaaaacactcttttt
cttaggaaaatggtcaaaagtattcacaaaatggtcaaaataagagcatg
ttaagaacatttttaggcttaagttTTAAgaccatccaaaggcttcaaaa
attttggatgttcttataaaaaaacgtgtttaaGATATAATAGAAAGGAT
GGCCCATCCTAATTAGAGGAACTGACTTAAAATATTATAAAGAATAATGT
AATCCTTAGATCAAGCATGGATTTATTGACATTGAGATTCGAGCAAAAAT
TGATCCATCTTGAAATTCTCATAGTGCAAGAATCTGTAAATGACTGAACT
GAATTTTCCGGTCAATCCGGAGACGATCTAGATTCTAAATTGGAAAGATT
TCTGTGGcacttaaaagttttatttttacataagtgttcccgtttcatat
cagacacatatttcatatcaagacagtgtctgcctattgttaatttgttg
atataaacaaaaaatgtttttctttccctctttctgatcatcttgctcca
cattggtgtcgatccaatgtgaaaaagattgtaaattaaaattgatgagt
aagcaaaaaatatcactcgttaaaaacaaaacctttaatacacttgttcc
ttgggggaATTTTGGAAGtgtctttcaattttttgaaaattcatacTCAT
TACACCTGTGAGTGCTTTAACCAATTTCACCAATgctgaaattcgatttt
tgaaacGGTTTGGGAAAAATTAGTGAATTTGATCTCAATAAACAAACACC
GTTGCTTTTCCAGGTAGCTTCGTCTGACGCTTCGAACATCGAATCGAGGA
TCGAGAGACATGGGGACGAATACGTCATCAATGGTCGAAAATGGTGGACT
TCAGGTGAGTAAGGTTCATAACATGTTGTTTAATAgatatcttttttaat
tttttagtaagtaaagtagtaaaaagtagtaagtctgcgactgcAGATCT
CCTTAGATTGCACCACTTATCTTTTATTCTTCTGTTAAGTGCTGAGCATC
TAGCAGTGAGGCATCAAGTACTAATTTTTTACGAAGTCATTGGTATGACC
TAGACTTCCAGtgtacttctgactgaactttgagtccagtgaagtagact
aaaattataaataaatcAACAAAACGATAAAACTTATTCTAAATCCTCAT
CAAAGTTTATaaaactataataaaaacatgaaaatacttcaaaatttgga
aaaaatcggTCCATAGATCATGGtcttctgtttgtttttcgccaaaaaag
gactggatctagtggcatGGATTTGCTACCACTTCAAGCAAAGTCAAAAT
ATGGAATCTGTCAAATtgccgggccacttatcagtgCCATCCAGTTTATC
AAAAAACTATAGGTATCCCCTGGGCTAGGTATGACCCGCCCGCAGATTGA
ACCGTTGCATTAGGAGCGCTTATTTGGCCATCGTTCTTTTCGAAAGAGAA
TAATGTTATTCATAAGTTTACTTCTTCTAAAACTAGTTAGgcctacgtca
tatcttccttcgtttcgagcgtaaaactcctactgttcgggatatgcgca
ctgctcttgttttgaatattgaatttttccggatacatcgcatgcgcact
gaggttttgattaaacaaatgaaagtttcgaaacctaagccaatcagctg
tgttttaaacaatcttttatttcaaatctctattgataaactccttttgt
ttaaaatttctatGATGCTTATCCTATTAAAAAGTGAATTCCTGGTGGTT
GTCACTGGTGACCCCCATAACAGTGCATATAggccaagagtaaggcctaa
aagcctggagctgtctattgtgtaaaCTAGAATTAGTTCGTAACTATCGT
CATACTCctgccctttttgtcaataattttgtaattttttggaATTGCTT
TTGTAGGTGCGAATCATCCAGATTGTAAAATCTGCGTTTTCATGGGCAAG
ACAGACTTCACTGCTGACAGAACAAAACAACAGGTAGGTCTTTTGAATTT
GAATCAAGCAATCTGCCGActcagaaattatttttttcatgaagtGAAAC
TTCAGAGACAAAgattttgcttataaaagaggCAGACTCGCAGCTTTTGT
ACCGCTCTATGTCCTCAATTTGACATCTTCTTCAGATCCTTTCTTCTTCA
CAGTTCGTTCATTTCATTTGTCTTCCTTGTATGATTTTGTACTCTTTGAT
CTGTTAGATTGGTTCTCATTTCGTGGAGAGCCTCTCTGAAGAGAATTGAA
CTGGTTTGCCATACTTCATTCTCATAAAGGTTTTTTATAAAAGCATccac
agtttgttcttataagaaaacgttTATTATTATGAATTTTAAAAGAGTAA
ATTTCATTTGCAGTCGATGATTTTGGTGCCGATGGATGCACCAGGAGTGA
GAGTGATTCGTCCTTTGACAGTTTTTGGTTTTGATGATGCACCTCATGGA
CATGCTGAAGTCGAATTCACCGATGTTCGCGTGCCAGCATCCAATATTTT
GCTCGGTGAAGGACGAGGATTCGAAATTGCACAGGTGAAAGAttgttatg
ttgtttttttgatTACCTTTATTGGACCCCTTTCCAcaggaaaaattgtc
caaaatattgtccctggtggaaaattatcctacaaatttttgtccccact
gaaagtaatcaaataaactaattctcactgcaaaatattatgctattttt
cccatccccactcaattttgaaaacaaaagaattgaaaaatcccCAGCGA
TAAAAAATATGGCaatatcaatctccatcgagtttcagtctgttattttt
attcccactaGCTGAataaatcctaccgggtctgtgagaagagagTGTGT
GTGGATAAGTGTCCCAAAACAGCTTCAGGTGATAAAAAGAGAGACGGCAA
GATAATGGAATCGGCAGTAACCCGATACGTGATGGCCTTCTTTTCATAGT
CATTTATCGCTGGTGTACctatcctgcattactaaataGTTATCTACCAC
TCTGATTCCTagttttctattgtctttattttCTGTTTCGAAAAGTCTGT
ACAAAACTATTCTTAGCTTAAAAAGATCCGCCATGTACGTAACTCAATGT
CACAGGGCTAAACACGACAGGATAAGAAAAAGGCTAAAAATCGCCCGTGG
TAGGGTGAGACAGGCTAGTTTTAAACAAGCAAATGAATTAATTTTCTTGT
AGGGGTGGTAGTCACTGGCCAAATTCGGGGTTTGGGACGgcaaaatatgt
cgttctttgatagttagggttggggtttgtcgttctttttgtcgcttttt
aatagttatttgtcgtttaTTTTAGATGGTTACAGTCTCTTAAGAAGACT
TTGATCTGTAATGTTTTTATACCCTGCTAagattttccttattttcaggG
TCGTCTTGGGCCAGGTCGTATCCACCACTGTATGCGCTTGATCGGTTATG
CTGAACGCGCGCTCGATATGATGATCGAGCGGACGAGTTCGCGCGTAGCT
TTTGGTGCTCCCATACTGAAACAAGGAACCATTCAATCTGATATCGCTGA
ATCAAGGATGGAAATTGAACAAGCAAGGTATTTATATGAATTGTTTTCTT
AATTTGTAGTTATAGGGTTAGAGGCTTTAAGGTTCATATGACAACTAAtc
ccattttgaatttttccgttttcgatacaccttttcgaccgtggTCGCTA
TTTActaccctaaactcgatccaatcctttttttacacttttttctattg
tctttagtgCGAAAAAGAAAGACTGGGACGGATTTAGGATGGTAAAACGT
TCAAAAAAatcccgcgcggcaattggcggctacggtcgaacaAGTGTATT
AAGGGCATATGACTTTGAACCTTACATAATTTCCTATACTCACTAGGTAG
GGGGGATTTCGGGTTGTGTGATGATTTTACACAATTAtaaatacacgggt
tgcaaaattttgtcagtgcagtcaaaacatgtgattactcgaaaaagttc
acgtgattttattcccatgttgctttacaacttacggctgctaactttat
tagtgttaataaattcgaaccaatcagaaataaatgtcatgtgacaagca
cataaaaatttcgagtaaaagcatgatttgtcttcagacttaaATTTTGC
AACCTGTATATTGATGAAATTAATCTCGTTAACCTAACTTTTGGATAATA
TAGAATCAGACAAGTAACTCCACTAACTTCCAATTATATAATAGATtata
tcggagtttttgatttttctaaagcgatccattgtgggattgtttcggga
atattacaatagaaacaggggggggtgaagcagttactacaagacatcat
gccggttagtaccgtggtggtgtgcCATATAAATTGGATAAAGTCACTTA
GTACTCAGatgtactaactgcaaaaaagggtggtcccctGCTAAAAATTT
GCCAAATTTTGGTACTAACTgtgtaaaaaataggattttgtgagaaaatt
taaaaaaaagacaatattttaccaaaaaagattttggggaagtagatttt
tttttcaaattttcgaaatttttttttcaaatcttaaaaacaatttgctN
gattttctaaaatgttgttttttcctattgaaagctatggaaaattgaat
catttttaagatattaaattttattttattttattttattgaatttatga
aggtttcagttagtactaactgtactaagtgtaccaaggtggtggtgtta
ctaagttcttccgagaaagcagttagtaggcatgatgtcttgtactaact
gcttcaccccccctGATAGAAAcgtcttaggaattcctcgagggaatcct
attgtaatactcccgaaacaatcccacaatgcatcgcttttttagaaaaa
tccaaaactccgataagatccaTTGGGGAGTCCCTCTTTGTCATTGTGGT
TCATTATTTTTCAGATTATTAACGTTGAAAGCAGCCCATATGATGGATAC
TGTTGGTAACAAGGTACACTTGGTGGATTACTAAGTCTTTGGATTTGCTT
TCCACCATCCCTCAGTTTCGAAAACTATTTTGGTATTGAATcggaaaaaa
gctttttttataacttatactctaaaatattaaaagatatctctttcatc
agaaaaattaaaagagtaCACTCTTTTATTTTGTACATTTGAAAAGTGCA
GTAGCACGAAACTAGGAGTAGTGTACTGTGTactcttttaatttttgtga
tgaaagagatcttttaatattttacttggctctggttttcattgagcact
ctgcaacatcaatcacaaacaaTACTTAACTTAAAACCCTCAAATAAGTG
Ccatcaaatacacgttttttataagaaccaactatataagaacacaaggc
ttcgatggccgaaatactaagaacaagttaagaacattttaaggctttgt
ggactccgATTagcaaaatggacaaaaataatgcaaaaacggcgaaaaga
agaacatgttaagaacaattttaggcttaaatctcaaaaagttaagaaca
tccgaaggcttcaaacattttatatgttcttataaaagaactgTTCTTTG
ACTTCAAGTGTGGGTTTACGGCTCAACTAATAAATGGCACCTTATAACGT
ATTATTTCCTCTCCTCTCCAGAAAGCAGCCAAAGAGATAGCGATGATCAA
AGTAGTGGCACCACGAATGGCTCAAGCAGTTATTGATCGTGCTATGCAGG
TTTGtagatattttttgaaagtttttttctataatTACGTTTTTTCACCT
AAAGCAGCACAAATTCGTCAATCGATATTTTAATGTCTCTTGAAGTGATA
GTTCTGATAGATAGAATACTTTCTTTTGGACTGTCATTGTCAAAACTTTT
ACAGCTTGTCTTTATTATATCCATGTAGCTGGAAAATGatcaaatacagt
tgacgctatctaatttgatgttttattattcgatatgctccattattcga
taacatttaaacatttaaagtccctgtcaacaagaaactctcataaacga
cgctcccttattcaataagctcccttattcgatgaaaatctaattcccCT
TGAACATCGAATTAGAAAGCTTCAACTGTAGTTAAAAAAAGTAACTTCAG
TTAACAAATATACCCGCGTATTATTGTTCCAGTCATTTGGTGGTATGGGA
TTATCTGGTGATACCCCTTTGGCTGGTTTGTTCATATGGGCACGAGTGCT
TCGATTGGCTGACGGACCTGATGAAGTCCATAAGAGAAGTATCGCCAGGA
TGGAGATTGCTCAACAGCTGAAAGGTCGTTTGTAGTTAGAAAtgggaatt
ttttattttgttctgtTCTAAATACTGCACGCATTTAAATACTTGATTTT
TATAAACCTCGTTCCttgtgtattatcagcttttttatgcttactgatag
cgctagatagtTCTCTGGCGTCTATCAGTAATGTAAGTAAAGCCTGGAAC
ACATGGGGACGAggtttagtttttattttacttttgtaTTTCGGGAACGG
GATTGAGATTACAAATTGTCATACCCTTTCAATTATCTGTCATTATCGAA
TATCCGTTAAATAAATCGAATAGCTAGAACCCTTAAGGGGTTGATTTTAG
AATCCATTCATCCTAACTGACATAAGTTTTTCAGATAAATAATTTGACTA
GGAAAACTCGAATGTTGTATAGGGGATGATCACATATAAGGGTTTTTAAA
GTAACTAAAAgtagtttttttgaatttttccttttaaaattttgtaaata
taattttcagataatttttcttagattagataaaaaataatcaatgaatt
ttcatatttttgtaaataaatataCAATACACAgaataaaaa

Gene-mRNA-Prot

This transcript is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type
XLOC_031113	XLOC_031113	Clytia hemisphaerica	gene

The following exon feature(s) are a part of this transcript:

Position

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
scaffold_15	supercontig	scaffold_15:259853..270344 +

Expression

Values :

    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
1.00127	0	6.38545	9.05129	0	0	2.32039	3.50183	6.38268	4.50619	7.3361	3.7927	7.33867	9.33746	9.60462	7.56485	6.37909	7.51212	9.94709	5.20459	4.34368	4.94481	3.09046	2.92536	4.7218	3.66106	4.73949e-08	1.60419	3.99592	3.04679

Blast

[Close]

BLAST of TCONS_00048982 vs. Swiss-Prot (Human)
Match: ACD10 (Acyl-CoA dehydrogenase family member 10 OS=Homo sapiens GN=ACAD10 PE=1 SV=1)

HSP 1 Score: 567.385 bits (1461), Expect = 0.000e+0
Identity = 258/413 (62.47%), Postives = 323/413 (78.21%), Query Frame = 1

Query:  109 SSEQQMIFSIDGLRPPVRKIYDDLIQFLDTEVYPREKEIMAERPESVRWTVHPLIEELKEKAKSQGLWNLFIPAETDPEQKYGAGFTNVEYALFCEQMGKCLYAPEIFNCAAPDTGNMEVLIKYGTEEQKEKWLTPLLDGKIRSCFGMTEPQVASSDASNIESRIERHGDEYVINGRKWWTSGANHPDCKICVFMGKTDFTADRTKQQSMILVPMDAPGVRVIRPLTVFGFDDAPHGHAEVEFTDVRVPASNILLGEGRGFEIAQGRLGPGRIHHCMRLIGYAERALDMMIERTSSRVAFGAPILKQGTIQSDIAESRMEIEQARLLTLKAAHMMDTVGNKKAAKEIAMIKVVAPRMAQAVIDRAMQSFGGMGLSGDTPLAGLFIWARVLRLADGPDEVHKRSIARMEIAQQL 1347
            +S   ++ S + L PPVR++Y  L  F++  VYP E E+ + +  + RW+  PLIE+LKEKAK++GLWNLF+P E DPE+KYGAG TNVEYA  CE MG  LYAPE+ NC+APDTGNME+L++YGTE QK +WL PLL+GK RSCF MTEPQVASSDA+NIE+ I      YVING KWW +G   P C++CVFMGKTD  A R +QQS++LVPMD PG+++IRPLTV+G +DAP GH EV F  VRVP  N++LG GRGFEIAQGRLGPGRIHHCMRLIG++ERAL +M  R  SR+AFG P+++QGT+ +DIA+SR+EIEQARLL L+AAH+MD  GNK AA +IAMIK+VAP MA  VIDRA+Q+FG  GLS D PLA  F WAR LR ADGPDEVH+ ++A++E+  ++
Sbjct:  647 TSRGGLVISPESLSPPVRELYHRLKHFMEQRVYPAEPELQSHQASAARWSPSPLIEDLKEKAKAEGLWNLFLPLEADPEKKYGAGLTNVEYAHLCELMGTSLYAPEVCNCSAPDTGNMELLVRYGTEAQKARWLIPLLEGKARSCFAMTEPQVASSDATNIEASIREEDSFYVINGHKWWITGILDPRCQLCVFMGKTDPHAPRHRQQSVLLVPMDTPGIKIIRPLTVYGLEDAPGGHGEVRFEHVRVPKENMVLGPGRGFEIAQGRLGPGRIHHCMRLIGFSERALALMKARVKSRLAFGKPLVEQGTVLADIAQSRVEIEQARLLVLRAAHLMDLAGNKAAALDIAMIKMVAPSMASRVIDRAIQAFGAAGLSSDYPLAQFFTWARALRFADGPDEVHRATVAKLELKHRI 1059

The following BLAST results are available for this feature:

BLAST of TCONS_00048982 vs. Swiss-Prot (Human)

BLAST of TCONS_00048982 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 1


Match Name	E-value	Identity	Description
ACD10	0.000e+0	62.47	Acyl-CoA dehydrogenase family member 10 OS=Homo sa...	[more]

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TCONS_00048982 (transcript) - C. hemisphaerica