TCONS_00048888 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048888
Unique NameTCONS_00048888
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length674

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048888 ID=TCONS_00048888|Name=TCONS_00048888|organism=Clytia hemisphaerica|type=transcript|length=674bp
ctttctattcttaaaaaaaatcatttaatgtcttaagtaacataatcacc
atggtaattgtttgaatacgaggcaagtgatgtttgtgacgtaatttatg
aaaaggtctattctgaGTTTTTACAAACATCCAATATAAAGCTAATAATA
GGTATCTTAGCCCCTTATGCTATGGTTCTTAATAaatgatgtctgaaatt
tttaGTACTAAAACCCCTGTTTTGTTACTGTTTACAAAATTACAATTGAA
ATGTAAATTacttaaaaaattttattaaaagtaaatGGAAGTGAGCTAAG
TGATACTCGAAGAAGAGAAATCAAAGACGTTTCTCCCGAGGAATTTATGC
CAACAGAGCAAAGTCTCCAAAAAGTTGAGAAAGAGTTCGTTATCCTGGCT
GCCAGAGTTAAAGTGAAATATATCCCTTCAATGAAGATCTTCAAAGATGT
GGTTGTACATCATATTGAACATGATTATTCTGAAATCATGACATAAAAGT
CTGAGCAGGTTCCATTAGGAGCATACGCCCTCAACGAAAACCGACATGAG
GATATCATAGAGATTATTGAAAGAATACAAGACAGGTATGTGGTAAAAGA
TGAATCAGGCAAAAATACAACCTTCTTTGGTGGTGATCAACTAACAGAAG
AAAGGGCAAGAACAGTGCAAAATG
Run BLAST on NCBI

transcript from alignment at scaffold_148:348732..349727+

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048888 ID=TCONS_00048888|Name=TCONS_00048888|organism=Clytia hemisphaerica|type=transcript|length=996bp|location=Sequence derived from alignment at scaffold_148:348732..349727+ (Clytia hemisphaerica)
ctttctattcttaaaaaaaatcatttaatgtcttaagtaacataatcacc
atggtaattgtttgaatacgaggcaagtgatgtttgtgacgtaatttatg
aaaaggtctattctgaGTTTTTACAAACATCCAATATAAAGCTAATAATA
GGTATCTTAGCCCCTTATGCTATGGTTCTTAATAaatgatgtctgaaatt
tttaGTACTAAAACCCCTGTTTTGTTACTGTTTACAAAATTACAATTGAA
ATGTAAATTacttaaaaaattttattaaaagtaaatGGAAGTGAGCTAAG
TGATACTCGAAGAAGAGAAATCAAAGACGTTTCTCCCGAGGAATTTATGC
CAACAGAGCAAAGTCTCCAAAAAGTTGAGAAAGAGTTCGTTATCCTGGCT
GCCAGAGTTAAAGTGAAATATATCCCTTCAATGAAGATCTTCAAAGATGT
GGTTGTACATCATATTGAACATGATTATTCTGAAATCATGACATAAAAGT
CTGAGCAGGTATTGCCAACTTTGCCATTTTAAAAcaatcaattattttta
attttaaaaagtgagtAGAAATAACATTCTTTGCCCTAGGTTTTAGACAT
GGATGAACAAACAAAGCTTGGTTTACAATaatcaaaaatctcttttacaG
GTTCCATTAGGAGCATACGCCCTCAACGAAAACCGACATGAGGATATCAT
AGAGATTATTGAAAGAATACAAGACAGGTAAACAAAAACATCTTTCATCA
GAGAGAGAGAAAAATTAGATCCCATTCTTGACATCCCTTTAGCTTAAAAA
ATATCTCCATAAATTCCTGCTCAAATTTTGTCAACCTTCTGTTACCAGGG
AAACGAACATTTATTTAAGagctcaaaaactaaaaaaacttcaaTAATGA
TTTTCAGGTATGTGGTAAAAGATGAATCAGGCAAAAATACAACCTTCTTT
GGTGGTGATCAACTAACAGAAGAAAGGGCAAGAACAGTGCAAAATG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031071XLOC_031071Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048888-exon-scaffold_148-1491911889:348732..349239TCONS_00048888-exon-scaffold_148-1491911889:348732..349239Clytia hemisphaericaexon
TCONS_00048888-exon-scaffold_148-1510915933:348732..349239TCONS_00048888-exon-scaffold_148-1510915933:348732..349239Clytia hemisphaericaexon
TCONS_00048888-exon-scaffold_148-1575043694:348732..349239TCONS_00048888-exon-scaffold_148-1575043694:348732..349239Clytia hemisphaericaexon
TCONS_00048888-exon-scaffold_148-1491911889:349382..349458TCONS_00048888-exon-scaffold_148-1491911889:349382..349458Clytia hemisphaericaexon
TCONS_00048888-exon-scaffold_148-1510915933:349382..349458TCONS_00048888-exon-scaffold_148-1510915933:349382..349458Clytia hemisphaericaexon
TCONS_00048888-exon-scaffold_148-1575043694:349382..349458TCONS_00048888-exon-scaffold_148-1575043694:349382..349458Clytia hemisphaericaexon
TCONS_00048888-exon-scaffold_148-1491911889:349639..349727TCONS_00048888-exon-scaffold_148-1491911889:349639..349727Clytia hemisphaericaexon
TCONS_00048888-exon-scaffold_148-1510915933:349639..349727TCONS_00048888-exon-scaffold_148-1510915933:349639..349727Clytia hemisphaericaexon
TCONS_00048888-exon-scaffold_148-1575043694:349639..349727TCONS_00048888-exon-scaffold_148-1575043694:349639..349727Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:348732..349727 +
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.677632	0.672888	0	0.521375	1.24507	0.707919	2.48584	4.5876	0.943671	0.646386	1.88888	0.62429	1.70245	2.60299	1.03335	0.492469	0.696165	1.01931	1.13921	1.14038	0.310817	1.12426	5.5277e-06	0.76025	2.21235	2.02205	2.03405	1.59918	1.04647	1.18391
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048888 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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