TCONS_00048934 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048934
Unique NameTCONS_00048934
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1835

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048934 ID=TCONS_00048934|Name=TCONS_00048934|organism=Clytia hemisphaerica|type=transcript|length=1835bp
TTAAAGGAAGAACTTCTGAAGAAAATCAACAGGGGAGAAATTCTAATCGG
TGAATTGATTGAACCAAAATGTTACATCAggataaagtttaaaaagggga
aaattattaaggaaaaggttgaaattcgTGGACGCAAACTTCCACTGGAG
GAAATTCGAAGGAGAATGTTTGAGGAACACAAATCTATGGGCATCTTGAG
ACCAATGGCTGAATATGATCGTTTTCTTCTAACGTGGGGTGACCACACTT
CGATGTTGAGTTCCGGTTATTTCCTGTATACCGTCAAGGTCATATATTCA
GATGATATTTTTTACACTGACAAGGAGATGCGTGAACTGTTTGGAAAGTC
CATTAATGTGCAAAGTAAAGTGGAACAACTCGAAATTTTCATCGTTGGCC
AATGCAAAGAAAAGTTGACTTATGTTAAGTCACGTTTGGATGGTATGGAG
GAAATGGCTGAGCCTTTCAAAGTCGGAGATGCTTTAGTGAAAGACGTTAT
GAGGTTTTTTATTGGTGACCATCCCGAACTCCAATTTGAATCTGGAAACT
CGCAAGGTGGCAATTATCCGTGTGTGTGTGGCTGTCATTCGGGCAAGTTC
GGAAACACCGCGTATGCTTTCAAAAACAACTTTGTAAAATCCCTTGATGA
AAGAAGAACAAAACTCATAGAAGGTCCTGCTGGTAGGCAAAAAAATGCTA
TCAATCCATATGGGAAGTTGAAAGTgaaagaattggaaaaagaaattttc
gcgcGGGATCttgtcaaaaaagtcaaagGTAAATGGTTGAAAGATGAGCT
AGATGATGTGCTGAAAATGGATTTGGCTGGTTTGTGCCGTATCCCTGCTG
TTTGCTTCCTCAATCCATCGCTTTCCCTAGAACGTATCAATCTCAAACAC
TATGAAATTTCTCTAATCGAGCCTTTGCACGATATTAAGGGACACATAAA
GAACATGTGGGAACTTCTACCAAAGCATCTCAGTAAAGATatggaaatct
tttttcaaaatgagcTTATATCCATTCtagGTGAAAAAGACACATATCGA
GGCAGTGACTACAGACTGTCCGCTCTCTTCATGTGCTGGGTTATGGAGAA
CCATTCAAGCTGTCCTCGTGAAATCAAGGAGCTGCTCTATACACTCACAG
AAATTAGTCGCCTTGCGTATCTCCCAGCCCAGAAGCGTTCACCAAGATTT
ATTCTACGCGCATACAATATCACCTACAAGCATACACTTCTCTGTAAACA
GATATTCGGAAGCAGGCCATCGCTAAACAAATTTTATGGAACGTACTATC
ATTCGCTAAGCGTCCATCTTCCTGAAGTATTTCGTATCATTGCTCCCTCG
TCCCTCTTCTCCGAGAGTGAAGAACGCTTGTTTAGCCAAATACGAGATAT
CAATCTGAAAAGATTTTTCAGAAGATTTATGGTTGTCGCGATACCACGGA
CTCAAGAGTTCAAGTATATCAACAGTTGATAGACAAACACGAAAACTCAA
CATTCCATCTTGGTGAAACGGACGACTCGTGGTCAGAGCATCTGAATAGA
ATTGTCGACTACATTCTGCCTCAGAATGATCCTTGGTGGGTCAAGAAATG
TAATATGATCGAATTTTTTGATGGCGATGACCAGCCAGAGGAGAGATCAG
AAGGGCCTCGAATGTTTGACTTCAAATCAACAAGTGTTGCAGAGgtaCAA
CACCAATTGAAAGAGACGCTCAAAAGAAATTGGCAATATATTAGTAAAGA
CCTGGCAAGCGAACCTTTAATTGACGATGAAGGTCagaatctttttttaa
tttatctgTTTTCTGAACAATCATCTGACTTCAAA
Run BLAST on NCBI

transcript from alignment at scaffold_148:316035..319751-

Legend: exon
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048934 ID=TCONS_00048934|Name=TCONS_00048934|organism=Clytia hemisphaerica|type=transcript|length=3717bp|location=Sequence derived from alignment at scaffold_148:316035..319751- (Clytia hemisphaerica)
TTAAAGGAAGAACTTCTGAAGAAAATCAACAGGGGAGAAATTCTAATCGG
TGAATTGATTGAACCAAAATGTTACATCAGGATAAAGTTTAAAAAGGGGA
AAATTATTAAGGAAAAGGTTGAAATTCGTGGACGCAAACTTCCACTGGAG
GAAATTCGAAGGAGAATGTTTGAGGAACACAAATCTATGGGTAAATAGTT
AACCCCTCTCTTTAGTCAGGTCAACATACATATTCTTGTTAAGCGCACTT
ACAATGTGTAGAGGCTGCTGATTCATTTTTTGTCACGAAATAGCCTTAAG
CTTTATGATTGACTTTAAGCATTTTCGGTTGAGATTGAAGGTAAAAAATA
ATTATTTTCCACAGCTATATATACGGAATTTACAACTTCGTTATTGTTCA
GGCATCTTGAGACCAATGGCTGAATATGATCGTTTTCTTCTAACGTGGGG
TGACCACACTTCGATGTTGAGTTCCGGTTATTTCCTGTATACCGTCAAGG
TCATATATTCAGATGATATTTTTTACACTGACAAGGAGATGCGTGAACTG
TTTGGAAAGTCCATTAATGTGCAAAGTAAAGTGGAACAACTCGAAATTTT
CATCGTTGGCCAATGCAAAGAAAAGTTGACTTATGTTAAGTCACGTTTGG
ATGGTATGGAGGAAATGGCTGAGCCTTTCAAAGTCGGAGATGCTTTAGTG
AAAGACGTTATGAGGTTTTTTATTGGTAAAGAAATTTAATAGGTCTTATA
ATAGTATCAAAAAAAGCTGCGGCTGGAATGATAACATCTGAATTTATGTT
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNCATCTAGAATTTATTTTAAACATTAGAGGTTTTATCAAA
CGTTATTGTCATTCAATATTTCGACTTTGTCTAATGGTTGTAAATTATTA
TATTTAAGGTGACCATCCCGAACTCCAATTTGAATCTGGAAACTCGCAAG
GTGGCAATTATCCGTGTGTGTGTGGCTGTCATTCGGGCAAGTTCGGAAAC
ACCGCGTATGCTTTCAAAAACAACTTTGTAAAATCCCTTGATGAAAGAAG
AACAAAAGTAAGTTTTTTCCGTCATGCTGTGTAGTATCTTTGTGCCCTCC
CCCCCCCACTGTAGAAGAAATAATAACAAACAATTAACAGTCAGTAAATC
AAAGTCCATTTGTTTGTTTAACAATAACATTCTCTATTTTGTAGCTCATA
GAAGGTCCTGCTGGTAGGCAAAAAAATGCTATCAATCCATATGGGAAGTT
GAAAGTGAAAGAATTGGAAAAAGAAATTTTCGCGCGGGATCTTGTCAAAA
AAGTCAAAGGTATGAAAGATAAGTTTAATTTTTGAAGCCTAGAAATTTTG
ACACTTGGTTCTTGGATTCATAGTCTTTTTTGCTACCCCTTGACAATAAA
TCGTCCATACCCTCTCCTTCGTAAATTTTTTCTGAGAGCCCATTTTAACA
CGGAAGACTTCAATATTATCTTTTTTTTTATACTATAGGTAAATGGTTGA
AAGATGAGCTAGATGATGTGCTGAAAATGGATTTGGCTGGTTTGTGCCGT
ATCCCTGCTGTTTGCTTCCTCAATCCATCGCTTTCCCTAGAACGTATCAA
TCTCAAACACTATGAAATTTCTCTAATCGAGCCTTTGCACGATATTAAGG
GACACATAAAGAACATGTGGGAACTTCTACCAAAGCATCTCAGTAAAGAT
ATGGAAATCTTTTTTCAAAATGAGCTTATATCCATTCTAGGTAAAAATAA
TTTTTTATTTACTTTTCAACTTCCTCTTCGTGCTTCAATATCACAAATTT
TCGAATGATTTGCTTTTTTTGTAAAATGATTTTGTTATTGATTTTGGAAT
TGCTAAGTTCCGTTTTTCTGAGTTTAAATAATGTCTAATTTAAAAAGACT
TTTTGCACTTCCATCTAGGTGAAAAAGACACATATCGAGGCAGTGACTAC
AGACTGTCCGCTCTCTTCATGTGCTGGGTTATGGAGAACCATTCAAGCTG
TCCTCGTGAAATCAAGGTAAACGTAAAGTGAGGTTGATACTGATATTTTT
TATTTTCAAACTTTCAACTGTTGATAACTGTAGATGAGAGTCGACTTTTT
TACATTTTGGACGCTGTTACTTACAATTTCATTATTTTGTCTCTAGGAGC
TGCTCTATACACTCACAGAAATTAGTCGCCTTGCGTATCTCCCAGCCCAG
AAGCGTTCACCAAGATTTATTCTACGCGCATACAATATCACCTACAAGCA
TACACTTCTCTGTAAACAGATATTCGGAAGCAGGCCATCGCTAAACAAAT
TTTATGGAACGTACTATCATTCGCTAAGCGTCCATCTTCCTGAAGTATTT
CGTATCATTGCTCCCTCGTCCCTCTTCTCCGAGAGTGAAGAACGCTTGTT
TAGCCAAATACGAGGTATCTTAAAAGCCACGTCTGATCGTAAGAAAGAAT
CAATCCGGGATGTTGGTTTGATAAGGCATGATTTCATTTTATTCATTTGC
AAATTCCAATTTTTGTTTATCAATAATTCAAGGATTTTGATTAGTGTTGG
ATATTCTGCGAAACGTTCACGCTATGTTTTTGTGACATTTGATTACCTTT
AAATTAATGCGGTTAATCTCCCTTCTTCCAACAGATATCAATCTGAAAAG
ATTTTTCAGAAGATTTATGGTTGTCGCGATACCACGGACTCAAGAGTTCA
AGTATATCAACAGTTGATAGGTATGTTCTTTATTATTGCTCCTCTTTGTC
GCATTTAACAGACACACGTGTAGACTCACGGCTGGGGCTGCTTGGCATTT
TATCTCAATTTCTGACTTTCTATGACCCGGCCCCTAATATTATACCATGA
AACAGCACGTTGCATCACTTTTTCCTAAAAACTTAAAAAAATAGATGGCA
AATTCTGGATTTTTCTATTCGGGTGTTCCGATAGAAAAAGTGTCATAATA
TTGAGTTAGCGATCAAGAACATAACTTAAAAAGATACTTGTAATTTATTG
ATTTTAGACAAACACGAAAACTCAACATTCCATCTTGGTGAAACGGACGA
CTCGTGGTCAGAGCATCTGAATAGAATTGTCGACTACATTCTGCCTCAGA
ATGATCCTTGGTGGGTCAAGAAATGTAATATGATCGAATTTTTTGATGGC
GATGACCAGCCAGAGGAGAGATCAGAAGGGCCTCGAATGTTTGACTTCAA
ATCAACAAGTGTTGCAGAGGTTCGTCTTTAATGTACTTTAATGTACTGTC
GTTCTTTAGAATGACCCCCCCCCAAGACAATTCATAGTCAGACCCGCATA
TATTCATTTTATATTTTCATTTTTAGGTACAACACCAATTGAAAGAGACG
CTCAAAAGAAATTGGCAATATATTAGTAAAGACCTGGCAAGCGAACCTTT
AATTGACGATGAAGGTCAGAATCTTTTTTTAATTTATCTGTTTTCTGAAC
AATCATCTGACTTCAAA
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031082XLOC_031082Clytia hemisphaericagene
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048934-exon-scaffold_148-1575043694:319562..319751TCONS_00048934-exon-scaffold_148-1575043694:319562..319751Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:319027..319350TCONS_00048934-exon-scaffold_148-1575043694:319027..319350Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:318445..318593TCONS_00048934-exon-scaffold_148-1575043694:318445..318593Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:318193..318307TCONS_00048934-exon-scaffold_148-1575043694:318193..318307Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:317762..318013TCONS_00048934-exon-scaffold_148-1575043694:317762..318013Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:317486..317583TCONS_00048934-exon-scaffold_148-1575043694:317486..317583Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:317088..317355TCONS_00048934-exon-scaffold_148-1575043694:317088..317355Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:316782..316867TCONS_00048934-exon-scaffold_148-1575043694:316782..316867Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:316283..316494TCONS_00048934-exon-scaffold_148-1575043694:316283..316494Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1575043694:316035..316175TCONS_00048934-exon-scaffold_148-1575043694:316035..316175Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:319562..319751TCONS_00048934-exon-scaffold_148-1510915933:319562..319751Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:319027..319350TCONS_00048934-exon-scaffold_148-1510915933:319027..319350Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:318445..318593TCONS_00048934-exon-scaffold_148-1510915933:318445..318593Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:318193..318307TCONS_00048934-exon-scaffold_148-1510915933:318193..318307Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:317762..318013TCONS_00048934-exon-scaffold_148-1510915933:317762..318013Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:317486..317583TCONS_00048934-exon-scaffold_148-1510915933:317486..317583Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:317088..317355TCONS_00048934-exon-scaffold_148-1510915933:317088..317355Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:316782..316867TCONS_00048934-exon-scaffold_148-1510915933:316782..316867Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:316283..316494TCONS_00048934-exon-scaffold_148-1510915933:316283..316494Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1510915933:316035..316175TCONS_00048934-exon-scaffold_148-1510915933:316035..316175Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:319562..319751TCONS_00048934-exon-scaffold_148-1491911889:319562..319751Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:319027..319350TCONS_00048934-exon-scaffold_148-1491911889:319027..319350Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:318445..318593TCONS_00048934-exon-scaffold_148-1491911889:318445..318593Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:318193..318307TCONS_00048934-exon-scaffold_148-1491911889:318193..318307Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:317762..318013TCONS_00048934-exon-scaffold_148-1491911889:317762..318013Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:317486..317583TCONS_00048934-exon-scaffold_148-1491911889:317486..317583Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:317088..317355TCONS_00048934-exon-scaffold_148-1491911889:317088..317355Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:316782..316867TCONS_00048934-exon-scaffold_148-1491911889:316782..316867Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:316283..316494TCONS_00048934-exon-scaffold_148-1491911889:316283..316494Clytia hemisphaericaexon
TCONS_00048934-exon-scaffold_148-1491911889:316035..316175TCONS_00048934-exon-scaffold_148-1491911889:316035..316175Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_148supercontigscaffold_148:316035..319751 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.0654571	0	0.0741139	0.120848	0	0	0.420777	0.735329	0.296756	0	0.90633	0.135785	0	0.0994079	0.124375	0	0	0.259121	0	0.631045	0	0	1.27915e-08	0.0762374	0.898258	0	0	0.159648	0	0.123369
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048934 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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