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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048885 ID=TCONS_00048885|Name=TCONS_00048885|organism=Clytia hemisphaerica|type=transcript|length=3951bp
GGAAAATATGATATGCATAAATAGTGAAAGTTTTAAGAAATACATTAACT
GCAAGCAACGAAGCAACGAAGACCTACAAATAACACGCGTTCAAACAAGA
CATCATGGCACAAGCGATCATTATTGCAATCGTGGTGTTGACAGCCATCA
TTTTGTTATTCTTCAACATTCTCTCCCTTCTTGTGCTCCTCTTCACGCCA
AAACTACGTCATCGCCTCTCCAACCTACCCGTCATCAGCTTCCTGATTGG
TTCCTTGCTACAAGGTGGTCTACCGGCTCCACTCTACATCTACAAAATCC
TGGTGCACCAATCGGGAAGTGAGCCTGGCTGGTTGTGCGATCTGTATCGT
TTCccttacattttttgcaatcaCATTATGGAGATAAGCATCATGATTCT
GGCTTGTGAACGTATGTGGGCTATCAGATATCCTTTTACATATTCCAAAG
TGTTGACCAGAAGAACTTTCAACTTCGTTTTGTTATCTGCATGGTTTGTG
ACAATCTGCGTCGATGCCATCCCATTTTTCAATGATAATCGTAACGATAA
TTGTTCATATGTGCCAGGCAGATCTTGGGGTTTATCGGTCATCATATTTT
ACAATATTGCACCTTTTGTGACTGTCGTTATCAATTATGCTATCATTTGG
AAGGTAGCTTATGGGTTTGCAATGGCTGATCGGAGAAGATCGGAGAGTTT
GAGACAATGCAATCAGGTCACTGTTTCCCTAATTGACGACGAAGGGAACA
AGACGCATACGTCATCAATGAGAAGTTACCAAAAGTCCATTCAATTTACG
TTGGAGATCAAAGCTACCAAACAGTCCATGGCAATAGCTGctgtcttttt
gttttgctgGTTGCCAATGAGTATTCTGTTTATGGCTgatcatttttgta
aaaactgtATCTCCGAAAATGAATACTTTGCAAGAAGAGTGGTCAAGATT
CTAGCTTTTTCATCCAGCCTGTTGACACCATTGGTGTATTGTTGGTGGAA
CAAAGACTTTCGACATTGTGCAAGGCGAATGTTCAGGTGTAAAGGGAAAG
GAGAATTCTCTGAAGCTTCCCACGAATACAGACTGTAGAAAATATAATCT
AGGATATTAATTAAATGTATGGCATTATTATTATATGGAAATATTAAGAA
GCAATAACTTTAACACTGTGTAAATATTCACCGTTTATTTTATTATTCGT
TATAAAGAGTNAGCAATAACTTTAACACTGTGTAAATATTCACCGTTTAT
TTTATTATTCGTTATAAAGagtataaaatattgtaaaaagcAAGAATTGA
AAAGGCATTTATAATAAAGGTGATGTCCTCCCTCGTGTCCTCCGGACAAA
GCAAAGATTTTGATAGCATCTAAACCTACGATAATCTTCGAAGTTTTATA
GACAGCCTGTCGTAATTCCTTCCTGCAACATTGGGGATTTTTATTAAAAT
CCCAATGATGGGGACTGATAGTCTATTGTTCTCAGTTCAAAGATGTGAAT
GGATTTGAAGGGCAATTTTTCATTGAGCTTTAAATCCTAATTAAAACAAA
GTTAATTTACCAGCTGGGcagaaattgtagggtattttttccaacCGCGG
ACAAAATCATAGTTAAACTttttgtgacacagggatgtatTGTAACAAAT
ACACAGTCACAtaggaagaatttttttttagattttggtccaaggagaaa
aatattgaaattaaggAGTTGTTGGAAAATGTAGTGTTTGTGAATATAAA
TATGATACTAAATTTACTAATGTTTGATCCTCTCTAATTTCCTAAAACAA
AGCAGATATAATTATTGCAGACACTCTTCTGtctggtggaactttttccc
acagcgggatacaaaaattatatcaaaatctcaatggggatagaaattct
attgttccaagctttaaaaatccagtgggaatggcttcaaagtgcaattt
tttaaacatcgaatttcaaatggggatgtgaaatcaaagtcaatttcctg
atggggctgaaattatagggtatttttcccaccggggatgaAATGTATTT
TCATGTGGGGCTGGGGTCCAAGCGGGTCTGTGAGACAGTGGAGTTTAACT
CGAGCATACGAACATCATGACAATAGCCCTCAAGGCAAAGGTTGAAAGTT
TCGATGGTCATTGATACAGGGCGACTAGAGTTTTCAATGTCCAAGAATAT
TTCTTCCCATCGTCGCCATTTTGGTTTAAGAAATACTGAAGTTACTTTCT
TCTATTCTGGTGTCTACCGTATGATGGGTAGCATTACTGGTGTTCCTCTT
AGTCCCATTTTTTCTCACTTTCTTATTGCCCGTTGACAGCAAACAAAATC
GTTTGAGGAAATTACCAGCTGTCGTTCGGTAGTCATTATTCCACCAGCAA
TAAAACAATGGCACCAACAGACTGGAGCTAAAGTTTATCAATTTGATAAC
CGCtctaatatttttgtttttatttccttCAGAATAACACCCGTTACAAA
AGTGATCCAAGATGTAAAATGCACTCAATGGTCCCCAGCAAATCAGGTAA
ACACAGATTAAAATTAATGAAGTCTTTGTGGCTTTGATTTCAAGATAGAA
CCTCAAATTGCTCAATGTTTTTGTGACGTTTGCTTTCATGGCACCATACG
AAGTCTTATGTTTAACGAAAGCTGTTTCTTCTGAGCACCTATTACTTTCA
CGAATGGAATCTTGTCGTTGACGATCATCACTAGCGAATTTGACGGCTAC
ACACCAAATGATGGAATAATTGACCAAGACCATCACAAATGGTAGCATGT
TATAAAACACAATAACACTCAAACCCCAAAACCGAGTTGGATTGAATAAG
CAATCTTCTTTTACATCCCTGATCCCGTTTAAGAAAGGAACGATATCGAC
AGCCAACGTCACTATCCATAACACCAGTATAGCCAGAATCATCGTCTTTC
GAACACTTTTGCTTTCGTAACGAAATGGAAACTTGATTGCAATCATGCGA
TCTAAACTGACCAATAGGATACTCATCTGCATGATATGTCCACAGAAAAG
GTACGGGAAGCGGTATAAATCACATGCCCATCCTGGATAATTATCCGGTG
CAGCTAATTTACGGTACACGTACAATGGTGCTGGTATGAGTCCTTGTAGG
GCAGACGCGACCAGAAAGCTCATTGTTGGTAAACTCGAATGTCGTTTCCG
TAAGGTTGGGCTGGATGCAATGACGAGAAGAGTCAGGATGTTGAAGGAGG
TGAAAAAGAGAGCAATCAAGATGGTGATACTGTACATCAATATGCTGTCC
ATCTTTCTTTACACTTTATTCAGTCTctgaaggaagaaaaaaatgtcatt
AGAAATATCTTGTAAACGAGAGAAAATAAGTACAAGTAGTATAGCAAGTT
TCGCTCCAatattttctcaaagaaaagcAGTTGACGTGATATTTGAGCTC
CTTTCCCAAATATTCCAAACTGAGTTACTCTCAAAGCAagtttttttggg
tcggcaatataACCTGATATCCAGGTAAATCCGAATACAAGCATATGTAA
TCGTTCTTACCATTCAAAGCAAAGATAAAACTATGTACAGTATGATTAAA
CTGTTGAAATAAAATTCCAAAACAAACGAGAGATGAAGTGTTAAACCCCA
TCCACTCAACCACTCAAACTTTATATCTAACAGCACTATTACAAAAATAC
CATTTGATAactgtttataatttttttcgaaaattatcactcctctctta
aaaataaaatgcaaaGTCACGTCAGTAATAACGACGTAAGGCCAATTGAC
TGTTACCATGGATAAAAGATCAATgggacaaatatttttctcctCCCATT
AATTTGTGTTTGTCCTCTAATTATTTCCTCGTTGCGATTGGCATTAAATG
TACTGAAAGACTGAATAATAATGCAGCTATACTGTGTATATAATAAGTTC
G Run BLAST on NCBI transcript from alignment at scaffold_148:285081..289265+ Legend: exon Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048885 ID=TCONS_00048885|Name=TCONS_00048885|organism=Clytia hemisphaerica|type=transcript|length=4185bp|location=Sequence derived from alignment at scaffold_148:285081..289265+ (Clytia hemisphaerica)
GGAAAATATGATATGCATAAATAGTGAAAGTTTTAAGGCAAGAAGAATAA
GTTAAATCTCGAGATCGTCGCATGTGCTCGTATCTAATAAATCTTACAGA
TTTTAGTTTTAAGAAGGCTTTTTATTCAAAGGTTTTGTCTGTAGATTAAA
AGTGTAGACGAGACACAAAACGTTTTAGTAAAGAGGTTTATTGTGGCTTG
CTGTATTAGTTTCTTTCTAGGAGATTTTTGCTGTCACAGCTTTCAAATAT
TCTCTGTTTTCATTCAGATAGAAATACATTAACTGCAAGCAACGAAGCAA
CGAAGACCTACAAATAACACGCGTTCAAACAAGACATCATGGCACAAGCG
ATCATTATTGCAATCGTGGTGTTGACAGCCATCATTTTGTTATTCTTCAA
CATTCTCTCCCTTCTTGTGCTCCTCTTCACGCCAAAACTACGTCATCGCC
TCTCCAACCTACCCGTCATCAGCTTCCTGATTGGTTCCTTGCTACAAGGT
GGTCTACCGGCTCCACTCTACATCTACAAAATCCTGGTGCACCAATCGGG
AAGTGAGCCTGGCTGGTTGTGCGATCTGTATCGTTTCccttacatttttt
gcaatcaCATTATGGAGATAAGCATCATGATTCTGGCTTGTGAACGTATG
TGGGCTATCAGATATCCTTTTACATATTCCAAAGTGTTGACCAGAAGAAC
TTTCAACTTCGTTTTGTTATCTGCATGGTTTGTGACAATCTGCGTCGATG
CCATCCCATTTTTCAATGATAATCGTAACGATAATTGTTCATATGTGCCA
GGCAGATCTTGGGGTTTATCGGTCATCATATTTTACAATATTGCACCTTT
TGTGACTGTCGTTATCAATTATGCTATCATTTGGAAGGTAGCTTATGGGT
TTGCAATGGCTGATCGGAGAAGATCGGAGAGTTTGAGACAATGCAATCAG
GTCACTGTTTCCCTAATTGACGACGAAGGGAACAAGACGCATACGTCATC
AATGAGAAGTTACCAAAAGTCCATTCAATTTACGTTGGAGATCAAAGCTA
CCAAACAGTCCATGGCAATAGCTGctgtctttttgttttgctgGTTGCCA
ATGAGTATTCTGTTTATGGCTgatcatttttgtaaaaactgtATCTCCGA
AAATGAATACTTTGCAAGAAGAGTGGTCAAGATTCTAGCTTTTTCATCCA
GCCTGTTGACACCATTGGTGTATTGTTGGTGGAACAAAGACTTTCGACAT
TGTGCAAGGCGAATGTTCAGGTGTAAAGGGAAAGGAGAATTCTCTGAAGC
TTCCCACGAATACAGACTGTAGAAAATATAATCTAGGATATTAATTAAAT
GTATGGCATTATTATTATATGGAAATATTAAGAAGCAATAACTTTAACAC
TGTGTAAATATTCACCGTTTATTTTATTATTCGTTATAAAGAGTNAGCAA
TAACTTTAACACTGTGTAAATATTCACCGTTTATTTTATTATTCGTTATA
AAGagtataaaatattgtaaaaagcAAGAATTGAAAAGGCATTTATAATA
AAGGTGATGTCCTCCCTCGTGTCCTCCGGACAAAGCAAAGATTTTGATAG
CATCTAAACCTACGATAATCTTCGAAGTTTTATAGACAGCCTGTCGTAAT
TCCTTCCTGCAACATTGGGGATTTTTATTAAAATCCCAATGATGGGGACT
GATAGTCTATTGTTCTCAGTTCAAAGATGTGAATGGATTTGAAGGGCAAT
TTTTCATTGAGCTTTAAATCCTAATTAAAACAAAGTTAATTTACCAGCTG
GGcagaaattgtagggtattttttccaacCGCGGACAAAATCATAGTTAA
ACTttttgtgacacagggatgtatTGTAACAAATACACAGTCACAtagga
agaatttttttttagattttggtccaaggagaaaaatattgaaattaagg
AGTTGTTGGAAAATGTAGTGTTTGTGAATATAAATATGATACTAAATTTA
CTAATGTTTGATCCTCTCTAATTTCCTAAAACAAAGCAGATATAATTATT
GCAGACACTCTTCTGtctggtggaactttttcccacagcgggatacaaaa
attatatcaaaatctcaatggggatagaaattctattgttccaagcttta
aaaatccagtgggaatggcttcaaagtgcaattttttaaacatcgaattt
caaatggggatgtgaaatcaaagtcaatttcctgatggggctgaaattat
agggtatttttcccaccggggatgaAATGTATTTTCATGTGGGGCTGGGG
TCCAAGCGGGTCTGTGAGACAGTGGAGTTTAACTCGAGCATACGAACATC
ATGACAATAGCCCTCAAGGCAAAGGTTGAAAGTTTCGATGGTCATTGATA
CAGGGCGACTAGAGTTTTCAATGTCCAAGAATATTTCTTCCCATCGTCGC
CATTTTGGTTTAAGAAATACTGAAGTTACTTTCTTCTATTCTGGTGTCTA
CCGTATGATGGGTAGCATTACTGGTGTTCCTCTTAGTCCCATTTTTTCTC
ACTTTCTTATTGCCCGTTGACAGCAAACAAAATCGTTTGAGGAAATTACC
AGCTGTCGTTCGGTAGTCATTATTCCACCAGCAATAAAACAATGGCACCA
ACAGACTGGAGCTAAAGTTTATCAATTTGATAACCGCtctaatatttttg
tttttatttccttCAGAATAACACCCGTTACAAAAGTGATCCAAGATGTA
AAATGCACTCAATGGTCCCCAGCAAATCAGGTAAACACAGATTAAAATTA
ATGAAGTCTTTGTGGCTTTGATTTCAAGATAGAACCTCAAATTGCTCAAT
GTTTTTGTGACGTTTGCTTTCATGGCACCATACGAAGTCTTATGTTTAAC
GAAAGCTGTTTCTTCTGAGCACCTATTACTTTCACGAATGGAATCTTGTC
GTTGACGATCATCACTAGCGAATTTGACGGCTACACACCAAATGATGGAA
TAATTGACCAAGACCATCACAAATGGTAGCATGTTATAAAACACAATAAC
ACTCAAACCCCAAAACCGAGTTGGATTGAATAAGCAATCTTCTTTTACAT
CCCTGATCCCGTTTAAGAAAGGAACGATATCGACAGCCAACGTCACTATC
CATAACACCAGTATAGCCAGAATCATCGTCTTTCGAACACTTTTGCTTTC
GTAACGAAATGGAAACTTGATTGCAATCATGCGATCTAAACTGACCAATA
GGATACTCATCTGCATGATATGTCCACAGAAAAGGTACGGGAAGCGGTAT
AAATCACATGCCCATCCTGGATAATTATCCGGTGCAGCTAATTTACGGTA
CACGTACAATGGTGCTGGTATGAGTCCTTGTAGGGCAGACGCGACCAGAA
AGCTCATTGTTGGTAAACTCGAATGTCGTTTCCGTAAGGTTGGGCTGGAT
GCAATGACGAGAAGAGTCAGGATGTTGAAGGAGGTGAAAAAGAGAGCAAT
CAAGATGGTGATACTGTACATCAATATGCTGTCCATCTTTCTTTACACTT
TATTCAGTCTctgaaggaagaaaaaaatgtcattAGAAATATCTTGTAAA
CGAGAGAAAATAAGTACAAGTAGTATAGCAAGTTTCGCTCCAatattttc
tcaaagaaaagcAGTTGACGTGATATTTGAGCTCCTTTCCCAAATATTCC
AAACTGAGTTACTCTCAAAGCAagtttttttgggtcggcaatataACCTG
ATATCCAGGTAAATCCGAATACAAGCATATGTAATCGTTCTTACCATTCA
AAGCAAAGATAAAACTATGTACAGTATGATTAAACTGTTGAAATAAAATT
CCAAAACAAACGAGAGATGAAGTGTTAAACCCCATCCACTCAACCACTCA
AACTTTATATCTAACAGCACTATTACAAAAATACCATTTGATAactgttt
ataatttttttcgaaaattatcactcctctcttaaaaataaaatgcaaaG
TCACGTCAGTAATAACGACGTAAGGCCAATTGACTGTTACCATGGATAAA
AGATCAATgggacaaatatttttctcctCCCATTAATTTGTGTTTGTCCT
CTAATTATTTCCTCGTTGCGATTGGCATTAAATGTACTGAAAGACTGAAT
AATAATGCAGCTATACTGTGTATATAATAAGTTCG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048885-exon-scaffold_148-1491911889:285081..285117 | TCONS_00048885-exon-scaffold_148-1491911889:285081..285117 | Clytia hemisphaerica | exon |
| TCONS_00048885-exon-scaffold_148-1510915933:285081..285117 | TCONS_00048885-exon-scaffold_148-1510915933:285081..285117 | Clytia hemisphaerica | exon |
| TCONS_00048885-exon-scaffold_148-1575043694:285081..285117 | TCONS_00048885-exon-scaffold_148-1575043694:285081..285117 | Clytia hemisphaerica | exon |
| TCONS_00048885-exon-scaffold_148-1491911889:285352..289265 | TCONS_00048885-exon-scaffold_148-1491911889:285352..289265 | Clytia hemisphaerica | exon |
| TCONS_00048885-exon-scaffold_148-1510915933:285352..289265 | TCONS_00048885-exon-scaffold_148-1510915933:285352..289265 | Clytia hemisphaerica | exon |
| TCONS_00048885-exon-scaffold_148-1575043694:285352..289265 | TCONS_00048885-exon-scaffold_148-1575043694:285352..289265 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:285081..289265 + |
Blast
The following BLAST results are available for this feature:
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