|
|
Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048891 ID=TCONS_00048891|Name=TCONS_00048891|organism=Clytia hemisphaerica|type=transcript|length=2677bp
AAAAAATCAGACATCTAACAAATATGTCAACAAGCCTTTATTATTCGAAC
TTTCAATCACATATTGCCATCTTTCAAAAGGCTTTGAGATATTGGATGAT
CGAGGCAATTTTTTCTGACAAACACACAACAAAGAAATCCCGTTACAAAA
GTCATCTACAGATATGATTGAAGATCACTTAACAAAAAAACACAGACGTG
TAAACACGACAGGAACAGGGTAACACTAAAACCCTTTCTTAAAAAACAGA
GTCAATCTGTTCTTAAGCACTTTAattcaaacatttcaaaataaagaaga
agaaaaggaaccGATTTCAGGCAGCGAGGGCAAAGCATCGTGGTGTTATT
CAGAGGGTGTGTTCAACTTGACAGCAATCGaaatattacaattttaccGT
GTGGGGAATTTGTAATAGTAACAGTTCAAAATTCAAATGTATAAAAATTG
AGTGCAACATCTTTAATCAGAAAGCTTGGAATATAGTGCAGCAAGCACAA
ATAACTGATAAATTTTGACGAATCAAGAAGTGCAGTAGCATCGACAAAAA
TAATGGCTTTTATGAAACCAGACGAATTCAGCGCATTTCCACTTCCATAC
TTACCTAGAGGAGGAGCATTCCCATCACCAACTGCTCCACTACCAAGTAT
GAATACTTTCTCCAACAAACGAAGACATTCAGAAAACACAACATACGAAG
CAACTTTACCATTACCACCATTGAAAGTTCCAAAACTCATCTCTTCAACT
AGCAGTCTTCCACCACCACCTCCCCTGGTCACACCAGGTCGAGGTCACTC
TTGCACATCTGATGATTGCAAATACTGCTCAGGATTGACTAATCTGGATA
TTGCAGCTTTTTACTGGTCCATGATTGCTATGAGAGGATACTCCAAAGCG
AAAGCATCCAGTTCATACGAAACGCCTTACTCACCAAACCTTCCATCTCC
AGTCTGCAAGTCTTCAACATTCGATCTTGCATACAAACCACCAAGTCCTT
CAGGTAGTTTGTCAAGCATGGATTCAGAACCTCTTTCACCATCAAGCAGT
ACTACAAGCGAATCATCAACTAGCTCCACTAAAGATTTGGGAATTAAATA
CCAATGTCAAGTCTGTCATAAATCTTATTCACACCCTCGACTTTTAAATC
GTCACCTTCAATCACACACACCCTACAAAAAACACCACTGCCCTCGCTGC
CGCAAAGGATTTAATGATGCTTTTGATCTGAAAAGACACATTCGAACACA
CACTGGAATCAAACCATTTCAATGTCGAATGTGTGAAAAATCATTCACTC
AGagATGTTCATTGGAAGCTCACATGACAAGAGTACACAATGTTGTCCAC
AAGTTCGCTTTCCGTGAACGCCGACCCAAGCTGTTTGTTTGTGAAGATTG
TGGTGTCACCTTCCCTGATAACAACAAGtttcgtcaacatgaaaaagaaa
gcaCATGCAGACCAAACAAATCAAACTAAGAGTTTAGTATAACAGTTTTA
GACAGtaagattgtttgttttatgtttGTAATGTCCCTATTTCTCCTGCT
CTCATTTTATTTGTTTCAGATTCTCAATGTTGAGAAAGAGAGGAGAAACG
TGTTGTCCCTGTATataaattttattctaaatacTTCAACTTATATTATA
ACGTATATATTACGAAAATGTGGAACAAGAAAAGGGTTGGCGGCTGATTA
TCACTAATGACTTATATTAAGTCGTAAAATAGCCAGCCAACTAATTTGCC
CTTTTGGGCAAACAATATTATTTTATAGGAAAGTCTTATTGTAAACAGTT
CACTAACTTTTTGCTACCGTTACAAAACTGTTCTAGTTCTATTTCAAACT
CAAGAAATCAACGTATACAGCAACAGTTGTAACGCTAGCAAAAAGTTAAG
TTATCGTATAAtcatttgttttcaattttatcgTATTGATTGTAAGAGCG
TGAGAGTTTAATGCGAGTGAGTGTTTAAAAGAGAGAAAGTGTGAGTTCGT
GGACTTTAGTCAGTGAGTGTGAATTTATATTAAGTAAGTTAGAGCGATCT
TGAGAGGTACGTTTAACAATAAGAGAAAGGGATGAGAGGTGATAAAAAAG
TTGACTTACTGAGGCAAGGTCAAAAATTATGACAGATTCTTTCCTGCGGT
TTCTTTATCCAAAAGCTTCTTTTGTTTGTCAAGTCGTCAACGACACTCCT
TCCctgttcaaaaaaaattaaaacaataagAAAAGACATGACTGAGAGAG
GGAGAGTGAGTGAGTCATCATTAAAAAGCTATAACGATATCATATTAATC
TCTATTGACAAAGTATATTAAGTTTAAGGACGTCCATCTATCGTTCATga
gagtttttcaataaaaccacATCTACTCTATCATCTTTTGTTCAAAATAG
GTGGAGCATGAGAAAGTAGAAAGGAATTTCTTTTCTATTCACCCAATGCC
GTTAGATGGCTCCGAAATGTTATTAAACTTAATACCATCCTATTAAACAT
CTAAAAACTAACCATCAGATTACAACTCTTACGATGGTTCTTTGCGTCGA
ATATGAATATCATGTAACAAAATCAACCGAgagaaagtttcttatctttg
ATAAAGCCGATAACGGTTTCGCCTATTTCTTTTCAGAAGTCTTTTGGGCC
AAGTAATCATATCACCTCAGGTTGGGN Run BLAST on NCBI protein sequence of TCONS_00048891-protein >TCONS_00048891-protein ID=TCONS_00048891-protein|Name=TCONS_00048891-protein|organism=Clytia hemisphaerica|type=polypeptide|length=308bp
MAFMKPDEFSAFPLPYLPRGGAFPSPTAPLPSMNTFSNKRRHSENTTYEA
TLPLPPLKVPKLISSTSSLPPPPPLVTPGRGHSCTSDDCKYCSGLTNLDI
AAFYWSMIAMRGYSKAKASSSYETPYSPNLPSPVCKSSTFDLAYKPPSPS
GSLSSMDSEPLSPSSSTTSESSTSSTKDLGIKYQCQVCHKSYSHPRLLNR
HLQSHTPYKKHHCPRCRKGFNDAFDLKRHIRTHTGIKPFQCRMCEKSFTQ
RCSLEAHMTRVHNVVHKFAFRERRPKLFVCEDCGVTFPDNNKFRQHEKES
TCRPNKSN Run BLAST on NCBI transcript from alignment at scaffold_148:27804..32409- Legend: exonfive_prime_UTRCDSthree_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048891 ID=TCONS_00048891|Name=TCONS_00048891|organism=Clytia hemisphaerica|type=transcript|length=4606bp|location=Sequence derived from alignment at scaffold_148:27804..32409- (Clytia hemisphaerica)
AAAAAATCAGACATCTAACAAATATGTCAACAAGCCTTTATTATTCGAAC
TTTCAATCACATATTGCCATCTTTCAAAAGGCTTTGAGATATTGGATGAT
CGAGGCAATTTTTTCTGACAAACACACAACAAAGAAATCCCGTTACAAAA
GTCATCTACAGATATGATTGAAGATCACTTAACAAAAAAACACAGACGTG
TAAACACGACAGGAACAGGGTAACACTAAAACCCTTTCTTAAAAAACAGA
GTCAATCTGTTCTTAAGCACTTTAATTCAAACATTTCAAAATAAAGAAGA
AGAAAAGGAACCGATTTCAGGCAGCGAGGGCAAAGCATCGTGGTGTTATT
CAGAGGGTGTGTTCAACTTGACAGCAATCGAAATATTACAATTTTACCGT
GTGGGGAATTTGTAATAGTAACAGTTCAAAATTCAAATGTATAAAAATTG
AGTGCAACATCTTTAATCAGAAAGCTTGGAATATAGTGCAGCAAGCACAA
ATAACTGGTAAGTAGTACAACATTTTGCATTATTGATTCTACGTTTATTG
ATGTGGGAAAAGTATTAGACAGATAAACATATCAATAATCAAATTTTTAA
GGAATATCTACTCGTAAAATAATCATGAAAATCTTTTCAACATTCATAAA
ACATTTTTTTCATGATACCCTGACGTCAAGTGTTTCACTTTTTAAATTAT
AGAAAGCTTCATTGTTTAGGTTTTTCACGAAACTGATTTTCGAAAAGAAG
CAGCAGCATCTTTTGATAAATAAGTAAAATATGAAGCTATTCATCTTGGA
GTATGATTGAATTATTCAAACTGCATCAACTTAGTATATGAACAGCCTCT
TGTGATTAATCAGTTTTTAAATGAATTATCCTGTTCTTTTTTCAACAGAT
AAATTTTGACGAATCAAGAAGTGCAGTAGCATCGACAAAAATAATGGCTT
TTATGAAACCAGACGAATTCAGCGCATTTCCACTTCCATACTTACCTAGA
GGAGGAGCATTCCCATCACCAACTGCTCCACTACCAAGTATGAATACTTT
CTCCAACAAACGAAGACATTCAGAAAACACAACATACGAAGCAACTTTAC
CATTACCACCATTGAAAGTTCCAAAACTCATCTCTTCAACTAGCAGTCTT
CCACCACCACCTCCCCTGGTCACACCAGGTCGAGGTCACTCTTGCACATC
TGATGATTGCAAATACTGCTCAGGATTGACTAATCTGGATATTGCAGCTT
TTTACTGGTCCATGATTGCTATGAGAGGATACTCCAAAGCGAAAGCATCC
AGTTCATACGAAACGCCTTACTCACCAAACCTTCCATCTCCAGTCTGCAA
GTCTTCAACATTCGATCTTGCATACAAACCACCAAGTCCTTCAGGTAGTT
TGTCAAGCATGGATTCAGAACCTCTTTCACCATCAAGCAGTACTACAAGC
GAATCATCAACTAGCTCCACTAAAGATTTGGGAATTAAATACCAATGTCA
AGTCTGTCATAAATCTTATTCACACCCTCGACTTTTAAATCGTCACCTTC
AATCACACACACCCTACAAAAAACACCACTGCCCTCGCTGCCGCAAAGGA
TTTAATGATGCTTTTGATCTGAAAAGACACATTCGAACACACACTGGAAT
CAAACCATTTCAATGTCGAATGTGTGAAAAATCATTCACTCAGGTAAGAT
ACTTTGAGTTTCTTATTTAGAAAGTCCATAGTTAGTAGACAAAGTGCCAA
CAGAGCATAAATACAACATTTTAAGATTAACAACTACACAACAGCATCTT
TTTTTTTGTTTTTTCAGAGATGTTCATTGGAAGCTCACATGACAAGAGTA
CACAATGTTGTCCACAAGTTCGCTTTCCGTGAACGCCGACCCAAGCTGTT
TGTTTGTGAAGATTGTGGTGTCACCTTCCCTGATAACAACAAGTTTCGTC
AACATGAAAAAGAAAGCACATGTAGACCAAACAAATCAAACTAAGAGTTT
AGTATAACAGTTTTAGACAGTAAGATTGTTCGTTTTATGTTTGTAATGTC
CCTATTTCTCCTGCTCTCATTTTATTTGTTTCAGATTCTCAATGTTGAGA
AAGAGAGGAGAAACGTGTTGTCCCTGTATATAAATTTTATTCTAAATACT
TCAACTTATATTATAACGTATATATTACGAAAATGTGGAACAAGAAAAGG
GTTGGCGGCTGATTATCACTAATGACTTATATTAAGTCGTAAAATAGCCA
GCCAACTAATTTGCCCTTTTGGGCAAACAATATTATTTTATAGGAAAGTC
TTATTGTAAACAGTTCACTAACTTCTTGCTACCGTTACAAAACTGTTCTA
NAAAATAATGGCTTTTATGAAACCAGACGAATTCAGCGCATTTCCACTTC
CATACTTACCTAGAGGAGGAGCATTCCCATCACCAACTGCTCCACTACCA
AGTATGAATACTTTCTCCAACAAACGAAGACATTCAGAAAACACAACATA
CGAAGCAACTTTACCATTACCACCATTGAAAGTTCCAAAACTCATCTCTT
CAACTAGCAGTCTTCCACCACCACCTCCCCTGGTCACACCAGGTCGAGGT
CACTCTTGCACATCTGATGATTGCAAATACTGCTCAGGATTGACTAATCT
GGATATTGCAGCTTTTTACTGGTCCATGATTGCTATGAGAGGATACTCCA
AAGCGAAAGCATCCAGTTCATACGAAACGCCTTACTCACCAAACCTTCCA
TCTCCAGTCTGCAAGTCTTCAACATTCGATCTTGCATACAAACCACCAAG
TCCTTCAGGTAGTTTGTCAAGCATGGATTCAGAACCTCTTTCACCATCAA
GCAGTACTACAAGCGAATCATCAACTAGCTCCACTAAAGATTTGGGAATT
AAATACCAATGTCAAGTCTGTCATAAATCTTATTCACACCCTCGACTTTT
AAATCGTCACCTTCAATCACACACACCCTACAAAAAACACCACTGCCCTC
GCTGCCGCAAAGGATTTAATGATGCTTTTGATCTGAAAAGACACATTCGA
ACACACACTGGAATCAAACCATTTCAATGTCGAATGTGTGAAAAATCATT
CACCCAGGTAAGATACTTTGAGTTTCTTATTTAGAAAGCCCATAGTTAGT
AGACAAAGTGCCAACAGAGCATAAATACAACATTTTAAGATTAACAACTA
CACAACAGCATCTTCTTTTTGTTTTTTTCAGAGATGTTCATTGGAAGCTC
ACATGACAAGAGTACACAATGTTGTCCACAAGTTCGCTTTCCGTGAACGC
CGACCCAAGCTGTTTGTTTGTGAAGATTGTGGTGTCACCTTCCCTGATAA
CAACAAGTTTCGTCAACATGAAAAAGAAAGCACATGCAGACCAAACAAAT
CAAACTAAGAGTTTAGTATAACAGTTTTAGACAGTAAGATTGTTTGTTTT
ATGTTTGTAATGTCCCTATTTCTCCTGCTCTCATTTTATTTGTTTCAGAT
TCTCAATGTTGAGAAAGAGAGGAGAAACGTGTTGTCCCTGTATATAAATT
TTATTCTAAATACTTCAACTTATATTATAACGTATATATTACGAAAATGT
GGAACAAGAAAAGGGTTGGCGGCTGATTATCACTAATGACTTATATTAAG
TCGTAAAATAGCCAGCCAACTAATTTGCCCTTTTGGGCAAACAATATTAT
TTTATAGGAAAGTCTTATTGTAAACAGTTCACTAACTTTTTGCTACCGTT
ACAAAACTGTTCTAGTTCTATTTCAAACTCAAGAAATCAACGTATACAGC
AACAGTTGTAACGCTAGCAAAAAGTTAAGTTATCGTATAATCATTTGTTT
TCAATTTTATCGTATTGATTGTAAGAGCGTGAGAGTTTAATGCGAGTGAG
TGTTTAAAAGAGAGAAAGTGTGAGTTCGTGGACTTTAGTCAGTGAGTGTG
AATTTATATTAAGTAAGTTAGAGCGATCTTGAGAGGTACGTTTAACAATA
AGAGAAAGGGATGAGAGGTGATAAAAAAGTTGACTTACTGAGGCAAGGTC
AAAAATTATGACAGATTCTTTCCTGCGGTTTCTTTATCCAAAAGCTTCTT
TTGTTTGTCAAGTCGTCAACGACACTCCTTCCCTGTTCAAAAAAAATTAA
AACAATAAGAAAAGACATGACTGAGAGAGGGAGAGTGAGTGAGTCATCAT
TAAAAAGCTATAACGATATCATATTAATCTCTATTGACAAAGTATATTAA
GTTTAAGGACGTCCATCTATCGTTCATGAGAGTTTTTCAATAAAACCACA
TCTACTCTATCATCTTTTGTTCAAAATAGGTGGAGCATGAGAAAGTAGAA
AGGAATTTCTTTTCTATTCACCCAATGCCGTTAGATGGCTCCGAAATGTT
ATTAAACTTAATACCATCCTATTAAACATCTAAAAACTAACCATCAGATT
ACAACTCTTACGATGGTTCTTTGCGTCGAATATGAATATCATGTAACAAA
ATCAACCGAGAGAAAGTTTCTTATCTTTGATAAAGCCGATAACGGTTTCG
CCTATTTCTTTTCAGAAGTCTTTTGGGCCAAGTAATCATATCACCTCAGG
TTGGGN Coding sequence (CDS) from alignment at scaffold_148:27804..32409- >TCONS_00048891 ID=TCONS_00048891|Name=TCONS_00048891|organism=Clytia hemisphaerica|type=CDS|length=2781bp|location=Sequence derived from alignment at scaffold_148:27804..32409- (Clytia hemisphaerica)
ATGACAAGAGTACACAATGTTGTCCACAAGTTCGCTTTCCGTGAACGCCG
ACCCAAGCTGTTTGTTTGTGAAGATTGTGGTGTCACCTTCCCTGATAACA
ACAAGTTTCGTCAACATGAAAAAGAAAGCACATGCAGACCAAACAAATCA
AACTAAAGATGTTCATTGGAAGCTCACATGGCTTTTATGAAACCAGACGA
ATTCAGCGCATTTCCACTTCCATACTTACCTAGAGGAGGAGCATTCCCAT
CACCAACTGCTCCACTACCAAGTATGAATACTTTCTCCAACAAACGAAGA
CATTCAGAAAACACAACATACGAAGCAACTTTACCATTACCACCATTGAA
AGTTCCAAAACTCATCTCTTCAACTAGCAGTCTTCCACCACCACCTCCCC
TGGTCACACCAGGTCGAGGTCACTCTTGCACATCTGATGATTGCAAATAC
TGCTCAGGATTGACTAATCTGGATATTGCAGCTTTTTACTGGTCCATGAT
TGCTATGAGAGGATACTCCAAAGCGAAAGCATCCAGTTCATACGAAACGC
CTTACTCACCAAACCTTCCATCTCCAGTCTGCAAGTCTTCAACATTCGAT
CTTGCATACAAACCACCAAGTCCTTCAGGTAGTTTGTCAAGCATGGATTC
AGAACCTCTTTCACCATCAAGCAGTACTACAAGCGAATCATCAACTAGCT
CCACTAAAGATTTGGGAATTAAATACCAATGTCAAGTCTGTCATAAATCT
TATTCACACCCTCGACTTTTAAATCGTCACCTTCAATCACACACACCCTA
CAAAAAACACCACTGCCCTCGCTGCCGCAAAGGATTTAATGATGCTTTTG
ATCTGAAAAGACACATTCGAACACACACTGGAATCAAACCATTTCAATGT
CGAATGTGTGAAAAATCATTCACTCAGATGACAAGAGTACACAATGTTGT
CCACAAGTTCGCTTTCCGTGAACGCCGACCCAAGCTGTTTGTTTGTGAAG
ATTGTGGTGTCACCTTCCCTGATAACAACAAGTTTCGTCAACATGAAAAA
GAAAGCACATGCAGACCAAACAAATCAAACTAAAGATGTTCATTGGAAGC
TCACATGGCTTTTATGAAACCAGACGAATTCAGCGCATTTCCACTTCCAT
ACTTACCTAGAGGAGGAGCATTCCCATCACCAACTGCTCCACTACCAAGT
ATGAATACTTTCTCCAACAAACGAAGACATTCAGAAAACACAACATACGA
AGCAACTTTACCATTACCACCATTGAAAGTTCCAAAACTCATCTCTTCAA
CTAGCAGTCTTCCACCACCACCTCCCCTGGTCACACCAGGTCGAGGTCAC
TCTTGCACATCTGATGATTGCAAATACTGCTCAGGATTGACTAATCTGGA
TATTGCAGCTTTTTACTGGTCCATGATTGCTATGAGAGGATACTCCAAAG
CGAAAGCATCCAGTTCATACGAAACGCCTTACTCACCAAACCTTCCATCT
CCAGTCTGCAAGTCTTCAACATTCGATCTTGCATACAAACCACCAAGTCC
TTCAGGTAGTTTGTCAAGCATGGATTCAGAACCTCTTTCACCATCAAGCA
GTACTACAAGCGAATCATCAACTAGCTCCACTAAAGATTTGGGAATTAAA
TACCAATGTCAAGTCTGTCATAAATCTTATTCACACCCTCGACTTTTAAA
TCGTCACCTTCAATCACACACACCCTACAAAAAACACCACTGCCCTCGCT
GCCGCAAAGGATTTAATGATGCTTTTGATCTGAAAAGACACATTCGAACA
CACACTGGAATCAAACCATTTCAATGTCGAATGTGTGAAAAATCATTCAC
TCAGATGACAAGAGTACACAATGTTGTCCACAAGTTCGCTTTCCGTGAAC
GCCGACCCAAGCTGTTTGTTTGTGAAGATTGTGGTGTCACCTTCCCTGAT
AACAACAAGTTTCGTCAACATGAAAAAGAAAGCACATGCAGACCAAACAA
ATCAAACTAAAGATGTTCATTGGAAGCTCACATGGCTTTTATGAAACCAG
ACGAATTCAGCGCATTTCCACTTCCATACTTACCTAGAGGAGGAGCATTC
CCATCACCAACTGCTCCACTACCAAGTATGAATACTTTCTCCAACAAACG
AAGACATTCAGAAAACACAACATACGAAGCAACTTTACCATTACCACCAT
TGAAAGTTCCAAAACTCATCTCTTCAACTAGCAGTCTTCCACCACCACCT
CCCCTGGTCACACCAGGTCGAGGTCACTCTTGCACATCTGATGATTGCAA
ATACTGCTCAGGATTGACTAATCTGGATATTGCAGCTTTTTACTGGTCCA
TGATTGCTATGAGAGGATACTCCAAAGCGAAAGCATCCAGTTCATACGAA
ACGCCTTACTCACCAAACCTTCCATCTCCAGTCTGCAAGTCTTCAACATT
CGATCTTGCATACAAACCACCAAGTCCTTCAGGTAGTTTGTCAAGCATGG
ATTCAGAACCTCTTTCACCATCAAGCAGTACTACAAGCGAATCATCAACT
AGCTCCACTAAAGATTTGGGAATTAAATACCAATGTCAAGTCTGTCATAA
ATCTTATTCACACCCTCGACTTTTAAATCGTCACCTTCAATCACACACAC
CCTACAAAAAACACCACTGCCCTCGCTGCCGCAAAGGATTTAATGATGCT
TTTGATCTGAAAAGACACATTCGAACACACACTGGAATCAAACCATTTCA
ATGTCGAATGTGTGAAAAATCATTCACTCAG
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048891-exon-scaffold_148-1575043694:31903..32409 | TCONS_00048891-exon-scaffold_148-1575043694:31903..32409 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1575043694:30717..31511 | TCONS_00048891-exon-scaffold_148-1575043694:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1575043694:30572..30592 | TCONS_00048891-exon-scaffold_148-1575043694:30572..30592 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1575043694:27804..29157 | TCONS_00048891-exon-scaffold_148-1575043694:27804..29157 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1510915933:31903..32409 | TCONS_00048891-exon-scaffold_148-1510915933:31903..32409 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1510915933:30717..31511 | TCONS_00048891-exon-scaffold_148-1510915933:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1510915933:30572..30592 | TCONS_00048891-exon-scaffold_148-1510915933:30572..30592 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1510915933:27804..29157 | TCONS_00048891-exon-scaffold_148-1510915933:27804..29157 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1491911889:31903..32409 | TCONS_00048891-exon-scaffold_148-1491911889:31903..32409 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1491911889:30717..31511 | TCONS_00048891-exon-scaffold_148-1491911889:30717..31511 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1491911889:30572..30592 | TCONS_00048891-exon-scaffold_148-1491911889:30572..30592 | Clytia hemisphaerica | exon |
| TCONS_00048891-exon-scaffold_148-1491911889:27804..29157 | TCONS_00048891-exon-scaffold_148-1491911889:27804..29157 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_148 | supercontig | scaffold_148:27804..32409 - |
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
| Term | Definition |
|---|
| IPR013087 | Znf_C2H2_type |
Vocabulary: Molecular Function
| Term | Definition |
|---|
| GO:0003676 | nucleic acid binding |
GO Annotation
GO Assignments
This transcript is annotated with the following GO terms.
| Category |
Term Accession |
Term Name |
| molecular_function |
GO:0003676 |
nucleic acid binding |
Blast
BLAST of TCONS_00048891 vs. Swiss-Prot (Human)
Match: OVOL1 (Putative transcription factor Ovo-like 1 OS=Homo sapiens GN=OVOL1 PE=2 SV=3) HSP 1 Score: 147.132 bits (370), Expect = 8.731e-39 Identity = 62/120 (51.67%), Postives = 89/120 (74.17%), Query Frame = 1
Query: 1090 GIKYQCQVCHKSYSHPRLLNRHLQSHTPYKKHHCPRCRKGFNDAFDLKRHIRTHTGIKPFQCRMCEKSFTQRCSLEAHMTRVHNVVHKFAFRERRPKLFVCEDCGVTFPDNNKFRQHEKE 1449
G + C+VC K++++ R+LNRH++ H K+H C C KGFND FDLKRH+RTHTG++P++C +C+K+FTQRCSLE+H+ ++H V K+A++ERR KL+VCE+CG T H KE
Sbjct: 115 GDLFTCRVCQKAFTYQRMLNRHMKCHNDVKRHLCTYCGKGFNDTFDLKRHVRTHTGVRPYKCSLCDKAFTQRCSLESHLKKIHGVQQKYAYKERRAKLYVCEECGCTSESQEGHVLHLKE 234
The following BLAST results are available for this feature:
|
