TCONS_00048809 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048809
Unique NameTCONS_00048809
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length668

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048809 ID=TCONS_00048809|Name=TCONS_00048809|organism=Clytia hemisphaerica|type=transcript|length=668bp
GGCCTTTGACACTGTGGATCATGAAATACTAATATCTAAGCTAGACCACT
ATGGCATCCGAGGAAACACTAAAGCCTGGTTCAAGTCATATCTCTCGGGT
AGGTCCCAATATGTTTCAATCTCgggaagaaaatcaaaacatcaactAAT
CAAACACGGTGTAACCCAGGGCTCTGTCCTGGGTCCATTATTATTTCTTG
TATACATTAATGATCTCCATTACTGTATTAAAACTTCAGAAACCTACCAC
TTTGCCGACGACACTCATCTACTAAATTTCTCCCAAACTGTCTGGTCTCT
GTGCAGAAGAGTGAACTCTGACCTCAGAGTTCTTGTCAGCTGGCTGAATG
CTAACAAAATATCGCTTAACGCTAGTAAGACCGAATTTATCATCTTTAGG
TCCAATAGGCGCCGTCTTGATAcaattccaaaaatcaaaatctcggGTAA
GGGCTTAACCCCAAGTAAAACCattaaatatttaggtgtctATCTTGATG
AACACCTCTCTTGGAAACAacatgttgctgttgttgctgTAAAACTTTGT
CGTGCAAATGGGGCTTTCTCTAAACTCCGTCACTATCTCCCTCTTCCAAA
CCTTATCAATGTCTACCATGCTATCTTCTCCTCTCACATTCGCTATGCTT
GTCAAACTTGGGGCCTCT
Run BLAST on NCBI

protein sequence of TCONS_00048809-protein

>TCONS_00048809-protein ID=TCONS_00048809-protein|Name=TCONS_00048809-protein|organism=Clytia hemisphaerica|type=polypeptide|length=222bp
AFDTVDHEILISKLDHYGIRGNTKAWFKSYLSGRSQYVSISGRKSKHQLI
KHGVTQGSVLGPLLFLVYINDLHYCIKTSETYHFADDTHLLNFSQTVWSL
CRRVNSDLRVLVSWLNANKISLNASKTEFIIFRSNRRRLDTIPKIKISGK
GLTPSKTIKYLGVYLDEHLSWKQHVAVVAVKLCRANGAFSKLRHYLPLPN
LINVYHAIFSSHIRYACQTWGL
Run BLAST on NCBI

transcript from alignment at scaffold_146:386308..386975

Legend: exonthree_prime_UTRCDSfive_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048809 ID=TCONS_00048809|Name=TCONS_00048809|organism=Clytia hemisphaerica|type=transcript|length=668bp|location=Sequence derived from alignment at scaffold_146:386308..386975 (Clytia hemisphaerica)
AGAGGCCCCAAGTTTGACAAGCATAGCGAATGTGAGAGGAGAAGATAGCA
TGGTAGACATTGATAAGGTTTGGAAGAGGGAGATAGTGACGGAGTTTAGA
GAAAGCCCCATTTGCACGACAAAGTTTTAcagcaacaacagcaacatgtT
GTTTCCAAGAGAGGTGTTCATCAAGATagacacctaaatatttaatGGTT
TTACTTGGGGTTAAGCCCTTACccgagattttgatttttggaattgTATC
AAGACGGCGCCTATTGGACCTAAAGATGATAAATTCGGTCTTACTAGCGT
TAAGCGATATTTTGTTAGCATTCAGCCAGCTGACAAGAACTCTGAGGTCA
GAGTTCACTCTTCTGCACAGAGACCAGACAGTTTGGGAGAAATTTAGTAG
ATGAGTGTCGTCGGCAAAGTGGTAGGTTTCTGAAGTTTTAATACAGTAAT
GGAGATCATTAATGTATACAAGAAATAATAATGGACCCAGGACAGAGCCC
TGGGTTACACCGTGTTTGATTagttgatgttttgattttcttcccGAGAT
TGAAACATATTGGGACCTACCCGAGAGATATGACTTGAACCAGGCTTTAG
TGTTTCCTCGGATGCCATAGTGGTCTAGCTTAGATATTAGTATTTCATGA
TCCACAGTGTCAAAGGCC

Coding sequence (CDS) from alignment at scaffold_146:386308..386975

>TCONS_00048809 ID=TCONS_00048809|Name=TCONS_00048809|organism=Clytia hemisphaerica|type=CDS|length=666bp|location=Sequence derived from alignment at scaffold_146:386308..386975 (Clytia hemisphaerica)
GAGGCCCCAAGTTTGACAAGCATAGCGAATGTGAGAGGAGAAGATAGCAT
GGTAGACATTGATAAGGTTTGGAAGAGGGAGATAGTGACGGAGTTTAGAG
AAAGCCCCATTTGCACGACAAAGTTTTAcagcaacaacagcaacatgtTG
TTTCCAAGAGAGGTGTTCATCAAGATagacacctaaatatttaatGGTTT
TACTTGGGGTTAAGCCCTTACccgagattttgatttttggaattgTATCA
AGACGGCGCCTATTGGACCTAAAGATGATAAATTCGGTCTTACTAGCGTT
AAGCGATATTTTGTTAGCATTCAGCCAGCTGACAAGAACTCTGAGGTCAG
AGTTCACTCTTCTGCACAGAGACCAGACAGTTTGGGAGAAATTTAGTAGA
TGAGTGTCGTCGGCAAAGTGGTAGGTTTCTGAAGTTTTAATACAGTAATG
GAGATCATTAATGTATACAAGAAATAATAATGGACCCAGGACAGAGCCCT
GGGTTACACCGTGTTTGATTagttgatgttttgattttcttcccGAGATT
GAAACATATTGGGACCTACCCGAGAGATATGACTTGAACCAGGCTTTAGT
GTTTCCTCGGATGCCATAGTGGTCTAGCTTAGATATTAGTATTTCATGAT
CCACAGTGTCAAAGGC
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_031028XLOC_031028Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048809-proteinTCONS_00048809-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048809-exon-scaffold_146-1491911889:386308..386975TCONS_00048809-exon-scaffold_146-1491911889:386308..386975Clytia hemisphaericaexon
TCONS_00048809-exon-scaffold_146-1510915933:386308..386975TCONS_00048809-exon-scaffold_146-1510915933:386308..386975Clytia hemisphaericaexon
TCONS_00048809-exon-scaffold_146-1575043694:386308..386975TCONS_00048809-exon-scaffold_146-1575043694:386308..386975Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:386308..386975 .
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
0.935284	0.962707	0.872315	1.11327	2.11073	0.995353	1.64361	1.77656	1.02987	0.812434	0.962598	1.39013	0.376219	0.551405	0.772306	0.687079	0.524015	0.475782	0.768275	0.374981	1.66948	1.70809	0	0.476506	0.867486	1.54075	1.71128	0.838978	0.822892	0.457361
Annotated Terms
The following terms have been associated with this transcript:
Vocabulary: INTERPRO
TermDefinition
IPR000477RT_dom
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048809 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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