TCONS_00048753 (transcript) - C. hemisphaerica

Overview
NameTCONS_00048753
Unique NameTCONS_00048753
Typetranscript
OrganismClytia hemisphaerica (Jellyfish)
Sequence length1614

Sequence
The following sequences are available for this feature:

transcript sequence

>TCONS_00048753 ID=TCONS_00048753|Name=TCONS_00048753|organism=Clytia hemisphaerica|type=transcript|length=1614bp
ccgtcaacgaTACTCTAACATTCGatatgctcccttattcgatgaaaatc
cgcttccacttgaaaatcgaattagagagcgtcgactTTACTTTTATTTG
TAGGTGTCGTGCAAGGTTTGGTGACCGGTATCCGTGGTTTGTGTAACGGA
ATGGGTCCTGCATTGTACGGAGtcatcttttacatttttcacgTCAACCT
GACGGATAACATTGGAACCGCCACAGCAATCCCGCCCGCCGCCCCTTCAA
TGAAACCATCCAATGCTTCTTTACTGTCACATAGGCCGGGTGTTAAATCC
GTATCTagcTCGGTGATTCCTGGTCCGCCGTTTTTGTTCGGTGCTTGTTT
AGTATTTCTGTCCTTATTGACTGCTTTATTCTTACCTGAAACCAAACCTC
ATCCACGACCGCTCAAACGCGAGTCCTCATTATCAAGCGTTATCCATGAC
GGAACGACCGAACGGACGGTATCGTGTAGTTCTTATGATAGCGAGTTTGA
AATCAATGATCAAACTGGACTTCTACGTGATGAGGTCTTATAGTATCATT
TTTGTGCATGCTTTATGGCGATAATGGAGTTgtatgaaatttcaaattgt
attATTTCTTCGGTTCTATGATGAATCATTGGTTAGATCTCCGTTCGCTG
GTTTTGAGAAATTGCATCCATGGTATAGATCAGTGGGcagaatgaaaaat
gataatCCTTCGTTGGAAGTTTCAGTCACAATCGAACGAGTATTGATGGA
TGGAGTTTTTCGATGGAATTGTTTGGTTGATGTCTTGCTGCCATAGAAAC
ATAATTTAGTTCTGTTGATTATTTTGAAGCAGCTACATGAAAAATCCTGC
TCGCTCTTTAAAAGGAAATATCCTAAATTACTTCATATTTAATGCAAgtg
tagcctagaaatctaagctagtttgatagGTGAAGTGAGTGTTtactagg
ataaatctgatggtaagttgtgactgaataacagtattccaaggcaaact
taaaatccgtaaaaatccgtaaaaatctttaaagccccgaaaacgctata
ttgcctttagccgtgtgtcctagccttgtgaatacgggcttagttaacta
ggctaatGCGAGTGCAGCGAGTTTGATATATTATTTGGTCTAGATTTTTA
GGTAGTTAAAAAGCTGTCAATTTAATATACAAATcatcacaagctttttc
aaaggaaacacACTGACAATTTTATTAGTGAGTTTATGCATTTGTACTTT
TGAGGACCCGCaattctgacccgcaaaatcgaggacggtaaaagtgctga
tttaccgtcgtcctcagctggttaggatctagtcaaattagaaccttacc
gtctccgtcgctgaaaaacacacatacatataCTCGATATTGAAAATAGG
AAAAGCAAACATATTCTTTCGAGACGTTGACAATCTGTTTCTTTCGCCAA
TCATTGGgctatttcattaaaaaaccatacagggggtggacgaacttttt
caagtcaaaaaagcttaTTGAAAATCTGTGAATACCCTACTTGAAAATGg
cgaaatttgcaaaagtacCCTTAGaaagattcttttcataccttaaagtg
agggtggacgaact
Run BLAST on NCBI

protein sequence of TCONS_00048753-protein

>TCONS_00048753-protein ID=TCONS_00048753-protein|Name=TCONS_00048753-protein|organism=Clytia hemisphaerica|type=polypeptide|length=130bp
MGPALYGVIFYIFHVNLTDNIGTATAIPPAAPSMKPSNASLLSHRPGVKS
VSSSVIPGPPFLFGACLVFLSLLTALFLPETKPHPRPLKRESSLSSVIHD
GTTERTVSCSSYDSEFEINDQTGLLRDEVL
Run BLAST on NCBI

transcript from alignment at scaffold_146:306343..310476-

Legend: exonfive_prime_UTRCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
>TCONS_00048753 ID=TCONS_00048753|Name=TCONS_00048753|organism=Clytia hemisphaerica|type=transcript|length=4134bp|location=Sequence derived from alignment at scaffold_146:306343..310476- (Clytia hemisphaerica)
CCGTCAACGATACTCTAACATTCGATATGCTCCCTTATTCGATGAAAATC
CGCTTCCACTTGAAAATCGAATTAGAGAGCGTCGACTTTACTTTTATTTG
TAGGTGTCGTGCAAGGTTTGGTGACCGGTATCCGTGGTTTGTGTAACGGA
ATGGGTCCTGCATTGTACGGAGTCATCTTTTACATTTTTCACGTCAACCT
GACGGATAACATTGGAACCGCCACAGCAATCCCGCCCGCCGCCCCTTCAA
TGAAACCATCCAATGCTTCTTTACTGTCACATAGGCCGGGTGTTAAATCC
GTATCTGTAAGACTCATTTTTTGAAACCTTTTTTTTTTTAGTGTGAAAAC
ATTTTCTTAACGTCTTCATTGACAACTCAATATACTTAGCTTCTAGTCGT
GATAAGAATTAAAAAAAACATCAGTTGATGCTGAAGGATTGCTAAACTTT
CTAATTCCCGGCAAAACTTTTCGTTTGCTTCTTAAGGGCTCTGACCATAG
TGAATTTTTCATAATTGCCGTGTTTAAAATGTGTTTTCTGACTGATGTAA
CCAACAAAACTATGGCATGTTATACATTTTCNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNAGACAAACTATTCCTGAATCTGAAAATTCAAAAAT
TGCATTGAAAAAATTTGATGAAGAAGAAACTGAAGACTTTTGCGAGGAAG
AGTATTTCAACTTTGCAGAGCTTAGTTTCGGCGAAGAAAAAACATTTTGA
AAAATTTTTTTGCAGCAGATGGTGTATCTTTTACCGAACAATAAAAATTT
TTGCGGAAAATTTTTGTAAATGCTTCTTTGTCTCGAAATCTTCAAAATAG
TGGTTTTTCATCAATTTNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNAA
AGTTCGAAACAAAAAGGTTAATTACCCATTAAAACTTAGCACTTTTTATA
AAAGAAGGTGATGCAACATATTATTAACGTCTTTTCAAAGTTCATAACGT
CATCTTTGCAATTAAGTTCTTAATTACTCTTAAGGGGTTTGATTAAAAAG
CAATTTATAAAGGCAATTCTTTGTTAAAAGTGTTAAAGAATCTAAAACAT
AACTTTTATGTTCAGATAATGAAATCAATTTTCTGACTATGGTCAGAGCC
CTTAAGCAACGTTAAAAGACCAACAACGCTCGGGGTAGGAACAAAAGTAG
ATACAACTTTGTTAGGTAGTCATTCCATAGGCCCTTGTGTGTTTTAAACG
CATTTGTACGCAGCAGAATAATTATTTTTGCCGGTATGCCCGCAAAAAAG
CAGAAATTTGTCCCCGGTAATGAGAACGTTGAGCCCTCCTATCGTTTGAT
GTTTTTCCGGCAAAAATAATTATTGTGCTGTATACAAATAAGAAGGACTT
ACCTTTTCGTCACTTAACATGGAAACAACCTAGTCGATCGACTTATAATC
TTATTCGGTCAGGGTTCATTCCATAATTTAAATTAAGGGATCTAACCATA
GTCAAAAAATTGATTTTGGTACTTGAGCATAAAAGTTATGTTTCAGGTTC
TTTTACACTTTTAACAAAGAATTGCCTTTGCAAATTGCTTTTCTTCTTCG
AAAAGTTGAAATACTGTTCGTTGCAAAAGTCTTCATTTTCTTCTTCATCA
ATTTTTTTCTTTGCGATTCATAAATTTTCAGACTCAAGGATAGTTGGCCT
AACAGAAAATGTATAACATGTCAATGTTTTATCACGCAGAAATTTATGTT
TTGTACAACATCAAAATTCACTATGGTCAGAGCCCTTAAATTAATATAAA
ACCGCTTTCCCCTAGAAAATAAACAATGCAAACATGTGCTGATAAAAGGA
ATGTTATTTTCGAAGTAAGCCTAAGCCATGGCGTCCTCCAGCTTTTTGGT
CCCCCCTAATATGAGCTAAAGTCCCCCATCTGGCCTCCCCCCCCACCTGT
CTTTAAAATTCGTGCTCCCCCCAATTGGGAAATCCCCCTAACCGTATTGT
ATAAGGGTTGCGAAGTGATGATCCAGACTCGCCTCAATTTGCAAGCTACT
ACAGCAAAAAAAAGACTCTCAAAATCCCTAGAAAGACAAGCTCATAAGCC
TGAATGCCCAAACACACCAGGAAGGTCTGTATTTATCCTATTANNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNCTATTCGCCTTTCTCCCCCCATCAAG
CTTGAAATTTTCACTTCCCCCCTGGCACCAAAATCTGATTCCCCCCCCCC
ATCTTCCTGGGGGGATGATCCCATGTAAGCACTTTTTTGTTCCTACTTTG
GAAATAAAAAGACTGAAACATTGCATAATAACAATTTATTCTTGATGGTT
AAAAATTTCTTTTTCTTTTTTTTCAGAGCTCGGTGATTCCTGGTCCGCCG
TTTTTGTTCGGTGCTTGTTTAGTATTTCTGTCCTTATTGACTGCTTTATT
CTTACCTGAAACCAAACCTCATCCACGACCGCTCAAACGCGAGTCCTCAT
TATCAAGCGTTATCCATGACGGAACGACCGAACGGACGGTATCGTGTAGT
TCTTATGATAGCGAGTTTGAAATCAATGATCAAACTGGACTTCTACGTGA
TGAGGTCTTATAGTATCATTTTTGTGCATGCTTTATGGCGATAATGGAGT
TGTATGAAATTTCAAATTGTATTATTTCTTCGGTTCTATGATGAATCATT
GGTTAGATCTCCGTTCGCTGGTTTTGAGAAATTGCATCCATGGTATAGAT
CAGTGGGCAGAATGAAAAATGATAATCCTTCGTTGGAAGTTTCAGTCACA
ATCGAACGAGTATTGATGGATGGAGTTTTTCGATGGAATTGTTTGGTTGA
TGTCTTGCTGCCATAGAAACATAATTTAGTTCTGTTGATTATTTTGAAGC
AGCTACATGAAAAATCCTGCTCGCTCTTTAAAAGGAAATATCCTAAATTA
CTTCATATTTAATGCAAGTGTAGCCTAGAAATCTAAGCTAGTTTGATAGG
TGAAGTGAGTGTTTACTAGGATAAATCTGATGGTAAGTTGTGACTGAATA
ACAGTATTCCAAGGCAAACTTAAAATCCGTAAAAATCCGTAAAAATCTTT
AAAGCCCCGAAAACGCTATATTGCCTTTAGCCGTGTGTCCTAGCCTTGTG
AATACGGGCTTAGTTAACTAGGCTAATGCGAGTGCAGCGAGTTTGATATA
TTATTTGGTCTAGATTTTTAGGTAGTTAAAAAGCTGTCAATTTAATATAC
AAATCATCACAAGCTTTTTCAAAGGAAACACACTGACAATTTTATTAGTG
AGTTTATGCATTTGTACTTTTGAGGACCCGCAATTCTGACCCGCAAAATC
GAGGACGGTAAAAGTGCTGATTTACCGTCGTCCTCAGCTGGTTAGGATCT
AGTCAAATTAGAACCTTACCGTCTCCGTCGCTGAAAAACACACATACATA
TACTCGATATTGAAAATAGGAAAAGCAAACATATTCTTTCGAGACGTTGA
CAATCTGTTTCTTTCGCCAATCATTGGGCTATTTCATTAAAAAACCATAC
AGGGGGTGGACGAACTTTTTCAAGTCAAAAAAGCTTATTGAAAATCTGTG
AATACCCTACTTGAAAATGGCGAAATTTGCAAAAGTACCCTTAGAAAGAT
TCTTTTCATACCTTAAAGTGAGGGTGGACGAACT

Coding sequence (CDS) from alignment at scaffold_146:306343..310476-

>TCONS_00048753 ID=TCONS_00048753|Name=TCONS_00048753|organism=Clytia hemisphaerica|type=CDS|length=786bp|location=Sequence derived from alignment at scaffold_146:306343..310476- (Clytia hemisphaerica)
AGCTCGGTGATTCCTGGTCCGCCGTTTTTGTTCGGTGCTTGTTTAGTATT
TCTGTCCTTATTGACTGCTTTATTCTTACCTGAAACCAAACCTCATCCAC
GACCGCTCAAACGCGAGTCCTCATTATCAAGCGTTATCCATGACGGAACG
ACCGAACGGACGGTATCGTGTAGTTCTTATGATAGCGAGTTTGAAATCAA
TGATCAAACTGGACTTCTACGTGATGAGGTCTTATAGATGGGTCCTGCAT
TGTACGGAGTCATCTTTTACATTTTTCACGTCAACCTGACGGATAACATT
GGAACCGCCACAGCAATCCCGCCCGCCGCCCCTTCAATGAAACCATCCAA
TGCTTCTTTACTGTCACATAGGCCGGGTGTTAAATCCGTATCTAGCTCGG
TGATTCCTGGTCCGCCGTTTTTGTTCGGTGCTTGTTTAGTATTTCTGTCC
TTATTGACTGCTTTATTCTTACCTGAAACCAAACCTCATCCACGACCGCT
CAAACGCGAGTCCTCATTATCAAGCGTTATCCATGACGGAACGACCGAAC
GGACGGTATCGTGTAGTTCTTATGATAGCGAGTTTGAAATCAATGATCAA
ACTGGACTTCTACGTGATGAGGTCTTATAGATGGGTCCTGCATTGTACGG
AGTCATCTTTTACATTTTTCACGTCAACCTGACGGATAACATTGGAACCG
CCACAGCAATCCCGCCCGCCGCCCCTTCAATGAAACCATCCAATGCTTCT
TTACTGTCACATAGGCCGGGTGTTAAATCCGTATCT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
Feature NameUnique NameSpeciesType
XLOC_030988XLOC_030988Clytia hemisphaericagene
The following polypeptide feature(s) derives from this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048753-proteinTCONS_00048753-proteinClytia hemisphaericapolypeptide
The following exon feature(s) are a part of this transcript:
Feature NameUnique NameSpeciesType
TCONS_00048753-exon-scaffold_146-1575043694:310171..310476TCONS_00048753-exon-scaffold_146-1575043694:310171..310476Clytia hemisphaericaexon
TCONS_00048753-exon-scaffold_146-1575043694:306343..307650TCONS_00048753-exon-scaffold_146-1575043694:306343..307650Clytia hemisphaericaexon
TCONS_00048753-exon-scaffold_146-1510915933:310171..310476TCONS_00048753-exon-scaffold_146-1510915933:310171..310476Clytia hemisphaericaexon
TCONS_00048753-exon-scaffold_146-1510915933:306343..307650TCONS_00048753-exon-scaffold_146-1510915933:306343..307650Clytia hemisphaericaexon
TCONS_00048753-exon-scaffold_146-1491911889:310171..310476TCONS_00048753-exon-scaffold_146-1491911889:310171..310476Clytia hemisphaericaexon
TCONS_00048753-exon-scaffold_146-1491911889:306343..307650TCONS_00048753-exon-scaffold_146-1491911889:306343..307650Clytia hemisphaericaexon
Position
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
scaffold_146supercontigscaffold_146:306343..310476 -
Expression

Hover the mouse over a column in the graph to view expression values in transcripts per million (tpm).
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Values : 
    GrOo_1	 GrOo_2	 FGOo_1	 FGOo_2	 EG_1	 EG_2	 P1_1	 P1_2	 P2_1	 P2_2	 P3_1	 P3_2	 PoPr_1	 PoPr_2	 St_1	 St_2	 GO_1	 GO_2	 PH_1	 PH_2	 BMF_1	 BMF_2	 MMF_1	 MMF_2	 M_1	 M_2	 GEC_1	 GEC_2	 GEN_1	 GEN_2
4.07705	3.99152	3.41834	3.04498	11.5361	7.87372	9.90478	11.2746	5.55282	8.35503	6.3449	5.00389	5.98335	6.42253	3.32181	4.41594	5.21838	4.5276	2.9215	4.06408	3.60676	4.60285	5.80658	5.87604	8.14824	9.47948	3.95872	3.93007	6.2667	6.52919
Blast
The following BLAST results are available for this feature:
BLAST of TCONS_00048753 vs. Swiss-Prot (Human)
Analysis Date: 2017-10-03 (blastx Clytia hemisphaerica v1.0 mRNA vs SwissProt (Homo sapiens))
Total hits: 0
Match NameE-valueIdentityDescription
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