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Sequence
The following sequences are available for this feature:
transcript sequence >TCONS_00048786 ID=TCONS_00048786|Name=TCONS_00048786|organism=Clytia hemisphaerica|type=transcript|length=1789bp
gaagaacggaagacattgcaatggtgcatatcatgaattctttaCCAACA
AATTTCACCCAAACTCGAAAACATGATGAGGCGTTTTATAGCAAACAAAG
GTCACACTGCTGAAGACAAACGAACACATGAAAAGTTATCGCGAAGGAGT
AATCAAGGCTTTGTCTCGTGTTCAGTCAGACAGGGACCTTTTGAAAGAAA
TCCTTCCATCGACCTGTCATCCATCATTTGATGCTATGGTATCCGTTGAA
ACCTACCCATACCATACACCGTAAAGTGTTAGCTCTCGTTTACAGAATGC
CTACCTTCGACATAGCCGTTGACAACCATTTGATGTCAATATCAAAACAC
TCATCTCAGATATCAAGATGAGAGTTTTCTGAGATGACAAATGCAGAAAA
CCGTCGcctaaaagaagaaagaaatggaCACCAGGCAAGGAGAAAATCTT
AGAAGAAGCTATCCGAAAAGGAACACCTGTTAAAGAAGTAGACGTAGACG
TTGATTGCTAACATCTTGAACTaaactgattttgaaaaaaggtgtgcttg
ggtaaattaatgcgtgtcaaTGCGTTGATGTGTATTATACTCTCATCTCA
GATAGATCAATTAATTTACATGACAAGGTTGTCTTAGATGTAGACGACGG
AGACCTGGTAAAACTTGCATTAACAAAGCGGAGATAGAGtgattttgttg
tatttgtatttaGTTGTTAATGTTTGTTTGTATTATTTTCTCTCTGGATA
TTTTTATGCCACGTCGTCGATATATGAGATCCGTTGAAACTAACCCCATA
CACCGTAAAGTGTTGGCTCTCATATATAGAATGCTTGCGTTCGACTCTGC
CGTAGATTCAATTTTACTATTTGATGTGTGTCAAAGTTTATTATCGGATA
TCGACGACAACGAAAAGACGGCAGCAATTATCAAATCAATGCGTGAATAT
TCATACGATGAATTATCGCAACTTTTAACTAAAGCTATACGGCTGCACTA
CTTTTTAACTCTTTATATATTGGCAGACTAACGAAGAGCCACAAAAAATT
CACCAATGATGACGACAACGATATCCGAGATGAGAGTTTTCTGAGATGAC
AAGAAGAAAGAAATGGACACCAGGCGAGGAGAAAATCTTAGAAGCTATCC
GAAAAAAACGCCTGTTAAAGACGTGGACGTTGATGCGAGCCCTCGTTCGT
TCCAAATGGGATAAATCAAAAAGATTAAGACGACAAATTATTAAATCAAT
GCGTCAAGATTCATACGAGCTATCACGACTTTTGTTAGGTTGGGAACTTT
CCTAATGCCGTAAGCTTGATCAAATGTATTGCTGGTCATATGATCATTTA
ATCCTATGGTATGCGTTGAAACCAACCCCATACATCGTAAAGTGTTGGCT
CTCATTTATAGAATGGTTGCGTTCTACTCTGCCGTAGATTCAATTTTACT
ATTTGATGTGTGTCAAAGTTTATTATCAGATATCAACAACAACGAAAAAA
CAGCGGAAATTATCAAAGCAATGCGTGAACATTCATATGAGCTTTCACAG
CTTTTAATGGTGACGTTAGAGTCGGAACTGTTTCCTCATGCTGTAAGCTT
AATCAAATATATTACTGGTCACGTGATCATTTAATGCTATGGTATGCGTT
GAGCCTGAACCAGTGTAGCCTATTGATGGAAGTTACAACCCTCCAAAATA
TGGTCGTGCGTATTACTTCAACGCTGATGGAAAGCAACTCCGGTGGCTTC
GAAAGATTTCCTGTTTACGCCACCCACACTGGAAAGTAT Run BLAST on NCBI protein sequence of TCONS_00048786-protein >TCONS_00048786-protein ID=TCONS_00048786-protein|Name=TCONS_00048786-protein|organism=Clytia hemisphaerica|type=polypeptide|length=103bp
MFVCIIFSLDIFMPRRRYMRSVETNPIHRKVLALIYRMLAFDSAVDSILL
FDVCQSLLSDIDDNEKTAAIIKSMREYSYDELSQLLTKAIRLHYFLTLYI
LAD Run BLAST on NCBI transcript from alignment at scaffold_146:83436..85224 Legend: exonthree_prime_UTRCDSfive_prime_UTR Hold the cursor over a type above to highlight its positions in the sequence below. >TCONS_00048786 ID=TCONS_00048786|Name=TCONS_00048786|organism=Clytia hemisphaerica|type=transcript|length=1789bp|location=Sequence derived from alignment at scaffold_146:83436..85224 (Clytia hemisphaerica)
ATACTTTCCAGTGTGGGTGGCGTAAACAGGAAATCTTTCGAAGCCACCGG
AGTTGCTTTCCATCAGCGTTGAAGTAATACGCACGACCATATTTTGGAGG
GTTGTAACTTCCATCAATAGGCTACACTGGTTCAGGCTCAACGCATACCA
TAGCATTAAATGATCACGTGACCAGTAATATATTTGATTAAGCTTACAGC
ATGAGGAAACAGTTCCGACTCTAACGTCACCATTAAAAGCTGTGAAAGCT
CATATGAATGTTCACGCATTGCTTTGATAATTTCCGCTGTTTTTTCGTTG
TTGTTGATATCTGATAATAAACTTTGACACACATCAAATAGTAAAATTGA
ATCTACGGCAGAGTAGAACGCAACCATTCTATAAATGAGAGCCAACACTT
TACGATGTATGGGGTTGGTTTCAACGCATACCATAGGATTAAATGATCAT
ATGACCAGCAATACATTTGATCAAGCTTACGGCATTAGGAAAGTTCCCAA
CCTAACAAAAGTCGTGATAGCTCGTATGAATCTTGACGCATTGATTTAAT
AATTTGTCGTCTTAATCTTTTTGATTTATCCCATTTGGAACGAACGAGGG
CTCGCATCAACGTCCACGTCTTTAACAGGCGTTTTTTTCGGATAGCTTCT
AAGATTTTCTCCTCGCCTGGTGTCCATTTCTTTCTTCTTGTCATCTCAGA
AAACTCTCATCTCGGATATCGTTGTCGTCATCATTGGTGAATTTTTTGTG
GCTCTTCGTTAGTCTGCCAATATATAAAGAGTTAAAAAGTAGTGCAGCCG
TATAGCTTTAGTTAAAAGTTGCGATAATTCATCGTATGAATATTCACGCA
TTGATTTGATAATTGCTGCCGTCTTTTCGTTGTCGTCGATATCCGATAAT
AAACTTTGACACACATCAAATAGTAAAATTGAATCTACGGCAGAGTCGAA
CGCAAGCATTCTATATATGAGAGCCAACACTTTACGGTGTATGGGGTTAG
TTTCAACGGATCTCATATATCGACGACGTGGCATAAAAATATCCAGAGAG
AAAATAATACAAACAAACATTAACAACtaaatacaaatacaacaaaatca
CTCTATCTCCGCTTTGTTAATGCAAGTTTTACCAGGTCTCCGTCGTCTAC
ATCTAAGACAACCTTGTCATGTAAATTAATTGATCTATCTGAGATGAGAG
TATAATACACATCAACGCAttgacacgcattaatttacccaagcacacct
tttttcaaaatcagtttAGTTCAAGATGTTAGCAATCAACGTCTACGTCT
ACTTCTTTAACAGGTGTTCCTTTTCGGATAGCTTCTTCTAAGATTTTCTC
CTTGCCTGGTGtccatttctttcttcttttaggCGACGGTTTTCTGCATT
TGTCATCTCAGAAAACTCTCATCTTGATATCTGAGATGAGTGTTTTGATA
TTGACATCAAATGGTTGTCAACGGCTATGTCGAAGGTAGGCATTCTGTAA
ACGAGAGCTAACACTTTACGGTGTATGGTATGGGTAGGTTTCAACGGATA
CCATAGCATCAAATGATGGATGACAGGTCGATGGAAGGATTTCTTTCAAA
AGGTCCCTGTCTGACTGAACACGAGACAAAGCCTTGATTACTCCTTCGCG
ATAACTTTTCATGTGTTCGTTTGTCTTCAGCAGTGTGACCTTTGTTTGCT
ATAAAACGCCTCATCATGTTTTCGAGTTTGGGTGAAATTTGTTGGtaaag
aattcatgatatgcaccattgcaatgtcttccgttcttc Coding sequence (CDS) from alignment at scaffold_146:83436..85224 >TCONS_00048786 ID=TCONS_00048786|Name=TCONS_00048786|organism=Clytia hemisphaerica|type=CDS|length=312bp|location=Sequence derived from alignment at scaffold_146:83436..85224 (Clytia hemisphaerica)
TTAGTCTGCCAATATATAAAGAGTTAAAAAGTAGTGCAGCCGTATAGCTT
TAGTTAAAAGTTGCGATAATTCATCGTATGAATATTCACGCATTGATTTG
ATAATTGCTGCCGTCTTTTCGTTGTCGTCGATATCCGATAATAAACTTTG
ACACACATCAAATAGTAAAATTGAATCTACGGCAGAGTCGAACGCAAGCA
TTCTATATATGAGAGCCAACACTTTACGGTGTATGGGGTTAGTTTCAACG
GATCTCATATATCGACGACGTGGCATAAAAATATCCAGAGAGAAAATAAT
ACAAACAAACAT
Gene-mRNA-Prot
This transcript is a part of the following gene feature(s):
The following polypeptide feature(s) derives from this transcript:
The following exon feature(s) are a part of this transcript:
| Feature Name | Unique Name | Species | Type |
|---|
| TCONS_00048786-exon-scaffold_146-1491911889:83436..85224 | TCONS_00048786-exon-scaffold_146-1491911889:83436..85224 | Clytia hemisphaerica | exon |
| TCONS_00048786-exon-scaffold_146-1510915933:83436..85224 | TCONS_00048786-exon-scaffold_146-1510915933:83436..85224 | Clytia hemisphaerica | exon |
| TCONS_00048786-exon-scaffold_146-1575043694:83436..85224 | TCONS_00048786-exon-scaffold_146-1575043694:83436..85224 | Clytia hemisphaerica | exon |
Position
The following features are aligned
| Aligned Feature | Feature Type | Alignment Location |
|---|
| scaffold_146 | supercontig | scaffold_146:83436..85224 . |
Blast
The following BLAST results are available for this feature:
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